BAC Information

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BAC

Clone NameB6Ng01-216N18
Chromosome5 (Build37)
Map Location 60,415,792 - 60,600,866
singlet/doubletdoublet
Overlap geneLOC546866
Upstream geneEG625870, LOC100041425
Downstream geneCbfa2t2-ps1, LOC100041498, LOC666597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216N18.bB6Ng01-216N18.g
ACCGA033439GA033440
length1,050950
definitionB6Ng01-216N18.b B6Ng01-216N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,415,792 - 60,416,844)(60,599,919 - 60,600,866)
sequence
gaattctcaactgaggaacaccaaatgtctgagaagcacctaaggaaata
ttcaacatccttagacatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaaggctaatatagagcatgatatagctgtgt
cttagtcagggtttctattcctgcacaaacatcatgaccaagaagcaagt
tgggaaggaaagggtttatttggcttacacttctatactgctcttcatca
ccaaggaagtcaggactggaactcaagcaggtcagaaagcaggagctgat
gcagaggccatggaggaatgttctttactggcttgctttaaccacagggt
ctgagggaaagcttgagtaagagctactgaaatagccagtgttctcagaa
cttgcaaagcacaaaggcatggctcaaagcacaaaggctcatcgctgtgg
aaggaagagaaggctgaggactagcttccagactgttggctggattcaaa
gtctgtacaaagctgcagctgggatacagctttcggtgcttctcaatggc
actgtccccttgtttccagttgtctagcatcaggccatagcagaagcact
tgaccttgtcattgacaccagtgtagtaaaagccagcacgagccagactc
ctttctgacacaggaactccagcagagaaagctgactatgtggacaatcg
gtacagctcacaggaaaagtcatacttcaactcaaaggtgtcagcactct
tcatcagcttggctagaaagacactgtcttgaaccatgttcatggtgaga
tgacagggaaagggaaggggcaagattttctctgcggatgtagttttgtg
catgatttctggtcggttttactactaggctgataccctctagggctctg
ggtaactccagggtgaaaccatacattacttctaaggaaaccagttaaaa
ttatatatagtaattcattcattctgagttcagacgaaagttttcttttt
tttccaggttttttcattttaatattggtttttggtgggggtcctcatgc


gaattctaaattttcagaaggccacgcaattatcatcatagatcatcatt
gttcagattggggtttttcacctggttatgtgcaattaaagtcacttaat
atttttgtgactttctaagtaatttatgatttcttagaaagaattatcct
taatagatatatctagcatttgtttgattgtatttttgtttgtttatttt
taattcacctactgaaggatgtctttgtggcttgcaaatattgacagtgg
agatttcaggtggatgcaagcacaggagataatccctgctgctatgaatt
cccatcagtatttgctgttgcctgttagatattaatactgcagctagatt
tatttcattgctttacttgtagttccctgttaacccaattttgagaaatt
ggctccagagtgtacactccgaagtttcctctgttaaaggtttcatacta
tgctgtttgtcaatgaggtaaaatggaatggtatgggtgtaagaactgga
agaagatggtaagttgaggtacacacttgagaaaaataatgggatgttcc
ttgttctttttctttccctctgaccattatcacatgactcttcagtaata
ttctactataaaagttctacaaagatgcctgtaaaacaactaaccaaaca
cagactacaactatggcaaatatgaaccaaaaactttcctttttataatg
tgctttatctcagatattttatcacaacaacaaaacttttaacagaaaca
tattttcactttacatcactgtgcttgtttgcaattaataggctgggttg
cttcgaccactatttaataggtgtatttttcattactgcatcaagtacac
ttcgatcatttgatggacataaattggcattactttatagcattttattc
attgattcattgaaaatcactggtatagcactagaagtacctctaacgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_60415792_60416844
seq2: B6Ng01-216N18.b_45_1094

seq1  GAATTCTCAACTGAGGAACACCAAATGTCTGAGAAGCACCTAAGGAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACTGAGGAACACCAAATGTCTGAGAAGCACCTAAGGAAATA  50

seq1  TTCAACATCCTTAGACATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAGACATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100

seq1  TCCACCTCACACCAGTCAGAAGGCTAATATAGAGCATGATATAGCTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACCAGTCAGAAGGCTAATATAGAGCATGATATAGCTGTGT  150

seq1  CTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGT  200

seq1  TGGGAAGGAAAGGGTTTATTTGGCTTACACTTCTATACTGCTCTTCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGAAAGGGTTTATTTGGCTTACACTTCTATACTGCTCTTCATCA  250

seq1  CCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGAAAGCAGGAGCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGAAAGCAGGAGCTGAT  300

seq1  GCAGAGGCCATGGAGGAATGTTCTTTACTGGCTTGCTTTAACCACAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCCATGGAGGAATGTTCTTTACTGGCTTGCTTTAACCACAGGGT  350

seq1  CTGAGGGAAAGCTTGAGTAAGAGCTACTGAAATAGCCAGTGTTCTCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGAAAGCTTGAGTAAGAGCTACTGAAATAGCCAGTGTTCTCAGAA  400

seq1  CTTGCAAAGCACAAAGGCATGGCTCAAAGCACAAAGGCTCATCGCTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAAGCACAAAGGCATGGCTCAAAGCACAAAGGCTCATCGCTGTGG  450

seq1  AAGGAAGAGAAGGCTGAGGACTAGCTTCCAGACTGTTGGCTGGATTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAGAAGGCTGAGGACTAGCTTCCAGACTGTTGGCTGGATTCAAA  500

seq1  GTCTGTACAAAGCTGCAGCTGGGATACAGCTTTCGGTGCTTCTCAATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTACAAAGCTGCAGCTGGGATACAGCTTTCGGTGCTTCTCAATGGC  550

seq1  ACTGTCCCCTTGTTTCCAGTTGTCTAGCATCAGGCCATAGCAGAAGCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCCCTTGTTTCCAGTTGTCTAGCATCAGGCCATAGCAGAAGCACT  600

seq1  TGACCTTGTCATTGACACCAGTGTAGTAAAAGCCAGCACGAGCCAGACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTGTCATTGACACCAGTGTAGTAAAAGCCAGCACGAGCCAGACTC  650

seq1  CTTTCTGACACAGGAACTCCAGCAGAGAAAGCTGACTATGTGGACAATCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGACACAGGAACTCCAGCAGAGAAAGCTGACTATGTGGACAATCG  700

seq1  GTACAGCTCACAGGAAAAGTCATACTTCAACTCAAAGGTGTCAGCACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCTCACAGGAAAAGTCATACTTCAACTCAAAGGTGTCAGCACTCT  750

seq1  TCATCAGCTTGGCTAGAAAGACACTGTCTTGAACCATGTTCATGGTGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGCTTGGCTAGAAAGACACTGTCTTGAACCATGTTCATGGTGAGA  800

seq1  TGACAGGG-AAGGGAAGGGGCAAGATTTTCTCTGCGGATGTAGTTTTGTG  849
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGGAAAGGGAAGGGGCAAGATTTTCTCTGCGGATGTAGTTTTGTG  850

seq1  CATGATTTCTGGTCGGTTTTACTACTAGGCTGATACCCTCTAGGGCTCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTCTGGTCGGTTTTACTACTAGGCTGATACCCTCTAGGGCTCTG  900

seq1  GGTAACTCCAGGGTGAAAACCATACA-TACTTCTAAGGAAACCAGTTAAA  948
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  GGTAACTCCAGGGTG-AAACCATACATTACTTCTAAGGAAACCAGTTAAA  949

seq1  ATTATTATATAAGTAATTCATTCATTCTTGAGTTCAGACGAAAGTTTTTC  998
      |||| ||||| |||||||||||||||| |||||||||||||||| |||||
seq2  ATTA-TATAT-AGTAATTCATTCATTC-TGAGTTCAGACGAAAG-TTTTC  995

seq1  TTTTTTTCCCAGGTTTTTTCATTTTTATATTTGTTTTTTTGGTGGTG--T  1046
      ||||||| ||||||||||||||||| ||||| |  |||||||||| |   
seq2  TTTTTTTTCCAGGTTTTTTCATTTTAATATTGG--TTTTTGGTGGGGGTC  1043

seq1  CTCATGC  1053
      |||||||
seq2  CTCATGC  1050


seq1: chr5_60599919_60600866
seq2: B6Ng01-216N18.g_65_1014 (reverse)

seq1  TGCGTTAGAGGTACTTCTAGTGCTATACCAGTGATTTTCATTGAATCAAT  50
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGCGTTAGAGGTACTTCTAGTGCTATACCAGTGATTTTCAATGAATCAAT  50

seq1  GATTAAAATGCTATAAAGTAATGCC-ATTTATGTCCATCAAACTGATCGA  99
      || |||||||||||||||||||||| |||||||||||||||| |||||||
seq2  GAATAAAATGCTATAAAGTAATGCCAATTTATGTCCATCAAA-TGATCGA  99

seq1  AGTGTACTTGAATGCAGTAATGAAAAATACACCTATTAAATAGTGGTCGA  149
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTTG-ATGCAGTAATGAAAAATACACCTATTAAATAGTGGTCGA  148

seq1  AGCAACCCAGCCTATT-ATTGCAAACAAGCACAGTGATGTTAAGTGAAAA  198
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  AGCAACCCAGCCTATTAATTGCAAACAAGCACAGTGATGTAAAGTGAAAA  198

seq1  TATGTTTCTGTTAAAAGTTTTGTTGTTGTGATAAAATATCTGAGAT-AAG  247
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATGTTTCTGTTAAAAGTTTTGTTGTTGTGATAAAATATCTGAGATAAAG  248

seq1  CACATTATAAAAAGG-AAGTTTTTGGTTCATATTTGCCATAGTTGTAGTC  296
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CACATTATAAAAAGGAAAGTTTTTGGTTCATATTTGCCATAGTTGTAGTC  298

seq1  TGTGTTTGGTTAGTTGTTTTACAGGCATCTTTGTAGAACTTTTATAGTAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGGTTAGTTGTTTTACAGGCATCTTTGTAGAACTTTTATAGTAG  348

seq1  AATATTACTGAAGAGTCATGTGATAATGGTCAGAGGGAAAGAAAAAGAAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTACTGAAGAGTCATGTGATAATGGTCAGAGGGAAAGAAAAAGAAC  398

seq1  AAGGAACATCCCATTATTTTTCTCAAGTGTGTACCTCAACTTACCATCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACATCCCATTATTTTTCTCAAGTGTGTACCTCAACTTACCATCTT  448

seq1  CTTCCAGTTCTTACACCCATACCATTCCATTTTACCTCATTGACAAACAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGTTCTTACACCCATACCATTCCATTTTACCTCATTGACAAACAG  498

seq1  CATAGTATGAAACCTTTAACAGAGGAAACTTCGGAGTGTACACTCTGGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTATGAAACCTTTAACAGAGGAAACTTCGGAGTGTACACTCTGGAG  548

seq1  CCAATTTCTCAAAATTGGGTTAACAGGGAACTACAAGTAAAGCAATGAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTCTCAAAATTGGGTTAACAGGGAACTACAAGTAAAGCAATGAAA  598

seq1  TAAATCTAGCTGCAGTATTAATATCTAACAGGCAACAGCAAATACTGATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTAGCTGCAGTATTAATATCTAACAGGCAACAGCAAATACTGATG  648

seq1  GGAATTCATAGCAGCAGGGATTATCTCCTGTGCTTGCATCCACCTGAAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCATAGCAGCAGGGATTATCTCCTGTGCTTGCATCCACCTGAAAT  698

seq1  CTCCACTGTCAATATTTGCAAGCCACAAAGACATCCTTCAGTAGGTGAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTGTCAATATTTGCAAGCCACAAAGACATCCTTCAGTAGGTGAAT  748

seq1  TAAAAATAAACAAACAAAAATACAATCAAACAAATGCTAGATATATCTAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAACAAACAAAAATACAATCAAACAAATGCTAGATATATCTAT  798

seq1  TAAGGATAATTCTTTCTAAGAAATCATAAATTACTTAGAAAGTCACAAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATAATTCTTTCTAAGAAATCATAAATTACTTAGAAAGTCACAAAA  848

seq1  ATATTAAGTGACTTTAATTGCACATAACCAGGTGAAAAACCCCAATCTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGTGACTTTAATTGCACATAACCAGGTGAAAAACCCCAATCTGA  898

seq1  ACAATGATGATCTATGATGATAATTGCGTGGCCTTCTGAAAATTTAGAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGATGATCTATGATGATAATTGCGTGGCCTTCTGAAAATTTAGAAT  948

seq1  TC  948
      ||
seq2  TC  950


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