BAC Information

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BAC

Clone NameB6Ng01-217J15
Chromosome5 (Build37)
Map Location 13,281,692 - 13,398,290
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
Downstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217J15.bB6Ng01-217J15.g
ACCGA033964GA033965
length205763
definitionB6Ng01-217J15.b B6Ng01-217J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,398,086 - 13,398,290)(13,281,692 - 13,282,455)
sequence
ctgtttgatgatctgaacttttcttggcagaaaagacaggactcctctca
caatcaaaaacacaaacactttttgaaagtactcataaaagttatctaag
cattgccatgataactttcctactgtctatatatcaacagcactcgtccc
ctgacctctgtgtgaatggagatggaggagggggcgttcagggaggaggg
ggagg

gaattctcagagcttgtggtctccatttcatgtggtttctgtctagattc
agatgtcatttataaaaagaaagttgtcaaaaggaaaaaagacagcagat
aacacttgctaccctttcccttaagtcacatgtgtgtattcagtgtacca
agtcggtgactggcaaattcatttttagcattttataggtttgttgactt
tcaatgtaataggctctttttcttttttcaattgaatttgtttagattat
ctactctgatatgcttggcttcctgctccaatccattagatagagcacat
agaagattatttataactggcactcaattatcctgataatatttccttta
gttagcttgatattcatctaatctatatagtctactatacagtgttagat
ttattatgagatcaaagcaagtgtaatcatattctccattatgagtttta
tttcttcgtgtattttcaaaaaaatcattttttcctttctagtactgggg
attaaaactttggtctcatacatgctaagcaagtactttactattgagct
gaaactccacccaaactactttacttaggaaaatatgtgtcaaacccatt
tttagctgccagctccctggaatccttgttaaaggcgacagcacaaaatg
aatcctgactaaagcagacttttttttttatagctagacaaaaattggct
atcatctctgacatggtgcgtgcgtgcatgtgtgtgtgtgtgtgtgtgtg
gtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13398086_13398290
seq2: B6Ng01-217J15.b_51_255 (reverse)

seq1  CCTCCCCCTCCTCCCTGAACGCCCCCTCCTCCATCTCCATTCACACAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCTCCTCCCTGAACGCCCCCTCCTCCATCTCCATTCACACAGAG  50

seq1  GTCAGGGGACGAGTGCTGTTGATATATAGACAGTAGGAAAGTTATCATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGGACGAGTGCTGTTGATATATAGACAGTAGGAAAGTTATCATGG  100

seq1  CAATGCTTAGATAACTTTTATGAGTACTTTCAAAAAGTGTTTGTGTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTTAGATAACTTTTATGAGTACTTTCAAAAAGTGTTTGTGTTTTT  150

seq1  GATTGTGAGAGGAGTCCTGTCTTTTCTGCCAAGAAAAGTTCAGATCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGAGAGGAGTCCTGTCTTTTCTGCCAAGAAAAGTTCAGATCATCA  200

seq1  AACAG  205
      |||||
seq2  AACAG  205


seq1: chr5_13281692_13282455
seq2: B6Ng01-217J15.g_68_830

seq1  GAATTCTCAGAGCTTGTGGTCTCCATTTCATGTGGTTTCTGTCTAGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAGCTTGTGGTCTCCATTTCATGTGGTTTCTGTCTAGATTC  50

seq1  AGATGTCATTTATAAAAAGAAAGTTGTCAAAAGGAAAAAAGACAGCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCATTTATAAAAAGAAAGTTGTCAAAAGGAAAAAAGACAGCAGAT  100

seq1  AACACTTGCTACCCTTTCCCTTAAGTCACATGTGTGTATTCAGTGTACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGCTACCCTTTCCCTTAAGTCACATGTGTGTATTCAGTGTACCA  150

seq1  AGTCGGTGACTGGCAAATTCATTTTTAGCATTTTATAGGTTTGTTGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGTGACTGGCAAATTCATTTTTAGCATTTTATAGGTTTGTTGACTT  200

seq1  TCAATGTAATAGGCTCTTTTTCTTTTTTCAATTGAATTTGTTTAGATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTAATAGGCTCTTTTTCTTTTTTCAATTGAATTTGTTTAGATTAT  250

seq1  CTACTCTGATATGCTTGGCTTCCTGCTCCAATCCATTAGATAGAGCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTGATATGCTTGGCTTCCTGCTCCAATCCATTAGATAGAGCACAT  300

seq1  AGAAGATTATTTATAACTGGCACTCAATTATCCTGATAATATTTCCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATTATTTATAACTGGCACTCAATTATCCTGATAATATTTCCTTTA  350

seq1  GTTAGCTTGATATTCATCTAATCTATATAGTCTACTATACAGTGTTAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTTGATATTCATCTAATCTATATAGTCTACTATACAGTGTTAGAT  400

seq1  TTATTATGAGATCAAAGCAAGTGTAATCATATTCTCCATTATGAGTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGAGATCAAAGCAAGTGTAATCATATTCTCCATTATGAGTTTTA  450

seq1  TTTCTTCGTGTATTTTCAAAAAAATCATTTTTTCCTTTCTAGTACTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCGTGTATTTTCAAAAAAATCATTTTTTCCTTTCTAGTACTGGGG  500

seq1  ATTAAAACTTTGGTCTCATACATGCTAAGCAAGTACTTTACTATTGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACTTTGGTCTCATACATGCTAAGCAAGTACTTTACTATTGAGCT  550

seq1  GAAACTCCACCCAAACTACTTTACTTAGGAAAATATGTGTCAAACCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCCACCCAAACTACTTTACTTAGGAAAATATGTGTCAAACCCATT  600

seq1  TTTAGCTGCCAGCTCCCTGGAATCCTTGTTAAAGGCGACAGCACAAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGCCAGCTCCCTGGAATCCTTGTTAAAGGCGACAGCACAAAATG  650

seq1  AATCCTGACTAAAGCAGACTTTTTTTTTTATAGCTAGACAAAAATTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGACTAAAGCAGACTTTTTTTTTTATAGCTAGACAAAAATTGGCT  700

seq1  ATCATCTCTGACATGGTGCGTGCGTGCATGTGTGTGTGTGTGTGTGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTCTGACATGGTGCGTGCGTGCATGTGTGTGTGTGTGTGTGTGTG  750

seq1  TGTGTGTGTGTGTG  764
       |||||||||||||
seq2  -GTGTGTGTGTGTG  763


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