BAC Information

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BAC

Clone NameB6Ng01-217L01
Chromosome5 (Build37)
Map Location 29,526,331 - 29,526,906
singlet/doubletsinglet
Overlap geneRnf32
Upstream geneCnpy1, Prr8, Shh, LOC100039258
Downstream geneEG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217L01.b
ACCGA034025
length600
definitionB6Ng01-217L01.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatggtcttaatatgctggtataatgctgagtaccagggaatta
atgtgagctaattatcaactgcagccctgctcccttatccttggttgtgc
tgtctgaggctcccatgattcactgtgagctaccatctgaaaacagtcaa
tggcacattccaaaaacaagtcataaggttttttcccccagtctaagcag
cacaatacaatctcacactgccctgtgcttcattcttgcctagtgtatcc
aggctgtgtatatgatgtgccctttgtccctctgcagttttcttggtgat
aagagagactgtggcagtattatagtcttagggtttgttgtcgctgcaga
gcaacacagcagagttgctagtcacccagatgtacccaacacaggaagta
aagcgcttccttcaagtgggaaaggggaaagtttttgatttcacagaaag
caattgtgtgcagaggttgccaagataagacgaaatcgtctatgtgccaa
actttaaatatagaaaaatagattcccaagaattttacaattatatttct
gcaatactcatattggcctatggtgggatcggcgggaagagggaatttaa

quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_29526331_29526906
seq2: B6Ng01-217L01.b_42_617 (reverse)

seq1  CCACCATAGGCCAATATGAGTATTGCAGAAATATAATTGTAAAATTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATAGGCCAATATGAGTATTGCAGAAATATAATTGTAAAATTCTTG  50

seq1  GGAATCTATTTTTCTATATTTAAAGTTTGGCACATAGACGATTTCGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTATTTTTCTATATTTAAAGTTTGGCACATAGACGATTTCGTCTT  100

seq1  ATCTTGGCAACCTCTGCACACAATTGCTTTCTGTGAAATCAAAAACTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGCAACCTCTGCACACAATTGCTTTCTGTGAAATCAAAAACTTTC  150

seq1  CCCTTTCCCACTTGAAGGAAGCGCTTTACTTCCTGTGTTGGGTACATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCCACTTGAAGGAAGCGCTTTACTTCCTGTGTTGGGTACATCTG  200

seq1  GGTGACTAGCAACTCTGCTGTGTTGCTCTGCAGTGACAACAAACCCTAAG  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGTGACTAGCAACTCTGCTGTGTTGCTCTGCAGCGACAACAAACCCTAAG  250

seq1  ACTATAATACTGCCACAGTCTCTCTTATCACCAAGAAAACTGCAGAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATACTGCCACAGTCTCTCTTATCACCAAGAAAACTGCAGAGGGA  300

seq1  CAAAGGGCACATCATATACACAGCCTGGATACACTAGGCAAGAATGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGCACATCATATACACAGCCTGGATACACTAGGCAAGAATGAAGC  350

seq1  ACAGGGCAGTGTGAGATTGTATTGTGCTGCTTAGACTGGGGGAAAAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCAGTGTGAGATTGTATTGTGCTGCTTAGACTGGGGGAAAAAACC  400

seq1  TTCTGACTTGTTTTTGGAATGTGCCATTGACTGTTTTCAGATGGTAGCTG  450
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTATGACTTGTTTTTGGAATGTGCCATTGACTGTTTTCAGATGGTAGCTC  450

seq1  ACAGTGAATCATGGGAGCCTCAGACAGCACAACCAAGGATAAGGGAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAATCATGGGAGCCTCAGACAGCACAACCAAGGATAAGGGAGCAG  500

seq1  GGCTGCAGTTGATAATTAGCTCACATTAATTCCCTGGTACTCAGCATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAGTTGATAATTAGCTCACATTAATTCCCTGGTACTCAGCATTAT  550

seq1  ACCAGCATATTAAGACCATAGAATTC  576
      ||||||||||||||||||||||||||
seq2  ACCAGCATATTAAGACCATAGAATTC  576