BAC Information

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BAC

Clone NameB6Ng01-217M21
Chromosome5 (Build37)
Map Location 138,084,438 - 138,195,124
singlet/doubletdoublet
Overlap geneIrs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4
Upstream geneMylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25
Downstream gene2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217M21.bB6Ng01-217M21.g
ACCGA034107GA034108
length1,055485
definitionB6Ng01-217M21.b B6Ng01-217M21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,084,438 - 138,085,489)(138,194,634 - 138,195,124)
sequence
gaattccgctctggcttgaaaaaaaacagggttaggataatgttttggct
gaggagacacaatgacatctagctgccaacatgtgaggggacagagctgt
cccaaaccaggatgagagtcttcatccaggcttgggccacagctagcctg
agactgattctgtgggcattcatctgagaagggttttatttgtttgttgc
ttggattgcgagtggggggagggctggcagggcagagagaagttctagtg
ttttctctgaagagtctggttcctcgagcatggcttcctgagggcttcct
aggtggtacagctggaaggaacagagcaggcaagggggcagcagagcagc
tcatggtggcctcagggttcctgggtcctgtgtgcaggagctgagctgaa
cagtactaaggtctcttcttttcctctcttccctgaccaatgcctgggtc
tcctcacctgactacctcccaaaagttctagaacttgatgctggcatagc
tatgtggactcttccctggggctgctccaggaacctccaggggagggacc
aggtccaggtccacatagttgaggcagctgtccagagaccccagcctagc
actgtccgttcctacatagtcggggatggacatgtagtccccagagagct
ctgacccttgggaagagcggggctgagccactgtgggtctccatctgtct
ctaaggctacaatgggcacccggatgcccaagttcagactccctggcctt
gagctcgtagtaaaaaggcccaggtaaaaatctattcatgggcacatact
ctgtgctctcacaatcctcgagcttgcttattaggatctgccctggcagg
ggtgggaggaaggcctgggggcgccattccacatatagtcacctgcttct
cctccccccatgtggacatagtcattcctgacttccatggtgatgtagtt
cccgcccagatctagtccttgtaggatggggttgactccatccttttcag
gggcttgaagtagtccctgctttgtctcgctcactggggctcttggcttg
tgctg
accaggcaccctattgtcccattctagatccaaggatgggcaagggcccc
ccagctcactcattaccccagtacttatcacaagccatttttccttctca
aaagggacctatcacagcacttggaacctgtgtctcctagctccagggga
cacaggtgaagtggggtctacccaccccattcctagggggtagaggaatg
gcccagcccaaacccgctggcccagccgggcgaggcactgaggggctggg
ttgggccagagccccagagccttgaaggctgggagcaaccggtcagacta
gggtgtgcagagcgggtgggacagagaaggggggaggggaccaggtcaaa
agaatggtgttatggaggcttcaacaggtagaactctttgtgatgggaga
gctggaggccgagctgagaaaggggcagaggagggacacgaagccttttt
gccagggaacttcccaaattggggggggtgggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138084438_138085489
seq2: B6Ng01-217M21.b_46_1100

seq1  GAATTCCGCTCTGGCTTGAAAAAAAACAGGGTTAGGATAATGTTTTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGCTCTGGCTTGAAAAAAAACAGGGTTAGGATAATGTTTTGGCT  50

seq1  GAGGAGACACAATGACATCTAGCTGCCAACATGTGAGGGGACAGAGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGACACAATGACATCTAGCTGCCAACATGTGAGGGGACAGAGCTGT  100

seq1  CCCAAACCAGGATGAGAGTCTTCATCCAGGCTTGGGCCACAGCTAGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACCAGGATGAGAGTCTTCATCCAGGCTTGGGCCACAGCTAGCCTG  150

seq1  AGACTGATTCTGTGGGCATTCATCTGAGAAGGGTTTTATTTGTTTGTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGATTCTGTGGGCATTCATCTGAGAAGGGTTTTATTTGTTTGTTGC  200

seq1  TTGGATTGCGAGTGGGGGGAGGGCTGGCAGGGCAGAGAGAAGTTCTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTGCGAGTGGGGGGAGGGCTGGCAGGGCAGAGAGAAGTTCTAGTG  250

seq1  TTTTCTCTGAAGAGTCTGGTTCCTCGAGCATGGCTTCCTGAGGGCTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTGAAGAGTCTGGTTCCTCGAGCATGGCTTCCTGAGGGCTTCCT  300

seq1  AGGTGGTACAGCTGGAAGGAACAGAGCAGGCAAGGGGGCAGCAGAGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTACAGCTGGAAGGAACAGAGCAGGCAAGGGGGCAGCAGAGCAGC  350

seq1  TCATGGTGGCCTCAGGGTTCCTGGGTCCTGTGTGCAGGAGCTGAGCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGGCCTCAGGGTTCCTGGGTCCTGTGTGCAGGAGCTGAGCTGAA  400

seq1  CAGTACTAAGGTCTCTTCTTTTCCTCTCTTCCCTGACCAATGCCTGGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTAAGGTCTCTTCTTTTCCTCTCTTCCCTGACCAATGCCTGGGTC  450

seq1  TCCTCACCTGACTACCTCCCAAAAGTTCTAGAACTTGATGCTGGCATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCTGACTACCTCCCAAAAGTTCTAGAACTTGATGCTGGCATAGC  500

seq1  TATGTGGACTCTTCCCTGGGGCTGCTCCAGGAACCTCCAGGGGAGGGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGACTCTTCCCTGGGGCTGCTCCAGGAACCTCCAGGGGAGGGACC  550

seq1  AGGTCCAGGTCCACATAGTTGAGGCAGCTGTCCAGAGACCCCAGCCTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAGGTCCACATAGTTGAGGCAGCTGTCCAGAGACCCCAGCCTAGC  600

seq1  ACTGTCCGTTCCTACATAGTCGGGGATGGACATGTAGTCCCCAGAGAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCGTTCCTACATAGTCGGGGATGGACATGTAGTCCCCAGAGAGCT  650

seq1  CTGACCCTTGGGAAGAGCGGGGCTGAGCCACTGTGGGTCTCCATCTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCTTGGGAAGAGCGGGGCTGAGCCACTGTGGGTCTCCATCTGTCT  700

seq1  CTAAGGCTACAATGGGCACCCGGATGCCCAAGTTCAGACTCCCTGGCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCTACAATGGGCACCCGGATGCCCAAGTTCAGACTCCCTGGCCTT  750

seq1  GAGCTCGTAGTAAAAAGGCCCAGGTAAAAATCTATTCATGGGCACATACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCGTAGTAAAAAGGCCCAGGTAAAAATCTATTCATGGGCACATACT  800

seq1  CTGTGCTCTCACAATCCTCGAGC-TGCTTATTAGGATCTGCCCTGGCAGG  849
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGTGCTCTCACAATCCTCGAGCTTGCTTATTAGGATCTGCCCTGGCAGG  850

seq1  GGTGGGAGGAAGGCCTGGGGGCGCCA-TCCACATATAGTCACCTGCTTCT  898
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGTGGGAGGAAGGCCTGGGGGCGCCATTCCACATATAGTCACCTGCTTCT  900

seq1  CCTCCCCCCATGTGGACATAGTCATTCCTGACTCCCATGGTGATGTAGTT  948
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTCCCCCCATGTGGACATAGTCATTCCTGACTTCCATGGTGATGTAGTT  950

seq1  CCCGCCCAGATCTAGTCCCTTGTAGGAGTGTGTTGACCCCATCCTTTCCA  998
      |||||||||||||||| ||||||||||  | |||||| ||||||||| ||
seq2  CCCGCCCAGATCTAGT-CCTTGTAGGATGGGGTTGACTCCATCCTTTTCA  999

seq1  GGGGCTTGAAGTAGT-CCTGCTTTG-CTCGCTCACTGGGGCTTCTTGCTT  1046
      ||||||||||||||| ||||||||| ||||||||||||||||  | ||||
seq2  GGGGCTTGAAGTAGTCCCTGCTTTGTCTCGCTCACTGGGGCTCTTGGCTT  1049

seq1  GTGCTG  1052
      ||||||
seq2  GTGCTG  1055

seq1: chr5_138194634_138195124
seq2: B6Ng01-217M21.g_67_557 (reverse)

seq1  CCACCCACCCCCCCCAATTTGGGAAGTTCCCTGGCAAAAAGGCTTCGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACCCCCCCCAATTTGGGAAGTTCCCTGGCAAAAAGGCTTCGTGT  50

seq1  CCCTCCTCTGCCCCTTTCTCAGCTCGGCCTCCAGCTCTCCCATCACAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCTGCCCCTTTCTCAGCTCGGCCTCCAGCTCTCCCATCACAAAG  100

seq1  AGTTCTACCTGTTGAAGCCTCCATAACACCATTCTTTTGACCTGGTCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTACCTGTTGAAGCCTCCATAACACCATTCTTTTGACCTGGTCCCC  150

seq1  TCCCCCCTTCTCTGTCCCACCCGCTCTGCACACCCTAGTCTGACCGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTTCTCTGTCCCACCCGCTCTGCACACCCTAGTCTGACCGGTTG  200

seq1  CTCCCAGCCTTCAAGGCTCTGGGGCTCTGGCCCAACCCAGCCCCTCAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCCTTCAAGGCTCTGGGGCTCTGGCCCAACCCAGCCCCTCAGTG  250

seq1  CCTCGCCCGGCTGGGCCAGCGGGTTTGGGCTGGGCCATTCCTCTACCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCCCGGCTGGGCCAGCGGGTTTGGGCTGGGCCATTCCTCTACCCCC  300

seq1  TAGGAATGGGGTGGGTAGACCCCACTTCACCTGTGTCCCCTGGAGCTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGGGGTGGGTAGACCCCACTTCACCTGTGTCCCCTGGAGCTAGG  350

seq1  AGACACAGGTTCCAAGTGCTGTGATAGGTCCCTTTTGAGAAGGAAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGGTTCCAAGTGCTGTGATAGGTCCCTTTTGAGAAGGAAAAATG  400

seq1  GCTTGTGATAAGTACTGGGGTAATGAGTGAGCTGGGGGGCCCTTGCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGATAAGTACTGGGGTAATGAGTGAGCTGGGGGGCCCTTGCCCAT  450

seq1  CCTTGGATCTAGAATGGGACAATAGGGTGCCTGGTGAATTC  491
      |||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGATCTAGAATGGGACAATAGGGTGCCTGGTGAATTC  491