BAC Information

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BAC

Clone NameB6Ng01-217N04
Chromosome5 (Build37)
Map Location 114,359,744 - 114,548,701
singlet/doubletdoublet
Overlap geneSsh1, Dao1, Svop
Upstream geneAdrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c
Downstream geneUsp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217N04.bB6Ng01-217N04.g
ACCGA034119GA034120
length1,090207
definitionB6Ng01-217N04.b B6Ng01-217N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,547,682 - 114,548,701)(114,359,744 - 114,359,950)
sequence
gaattctgttctctccttccaccatgcgtgttcaaacccaggttatcatg
tttggcagcaagcaccactccctgctgacctatctcactggcccagttta
taagtatgaagctcagcagtgtgagcaacgtactgacattccctatagaa
cgtttaaattccccagtcaggaatcacacatattaaacagggatcttttg
tttctttctctccgtgatgtctatttcatcttctatccttatggattcaa
catctgtgctgtgtgaattcattagcatctggcccttgggcctggctttt
tttcatttagcataacattttcagggtggatctgaagtgtagttcctatc
agacttcattctttgttgatggccatggtttgacgatcttgatattccga
acctcccgcctccacctcctgaatactgagatttaaggtttgtgccatca
aagccacttttcattcggtcctgggaaccggaacctcaggcttcaggaat
gctggatgctcactgtcccagctgagctctaccccaggtcccacttcttg
gtttctgtgactagtgttgtttttaagcatcagtgcacaagtgctcaggt
tcttgcttctggttacattgagaacacacatgggagtacagtggaaatct
gtcctggttttagttctgctgctgggataaagtatctgggcaaatcaact
gaggaaacaaaggggtttcttttagcttacaattcctagttatactctat
gttgtcgggaagccacagtggcaagaacttgagggactaagtcacagcac
accaacagtcaagagtagagtgatgatgataaatgattgattataatata
aagatgaaatttttaatattaataagaatagttaataacaataatatgac
tgctcacaaggcttccttgcttgctaggtgcacaggttaactttttctac
tctgaccacagttcaggtgccccagcctacagaatgttgaacacccaaca
ggtggggcttggtcctcccatatcaatttaaattaaattgagaataccaa
gtgctgcatgcctttaatctttgccctcaggaagcagagt
ttgttgcaggaattaagataaactgccacctcaaaacagaaggcacacgc
ctttagtcccaacactgaggaggctgaggcaggtggatctccgtcagtag
ttccaggccagcctggtctacatactgagttccaggacatccagggatat
gtaaagaaactctgtctctaaataagtaaataaaataaaattaggcaaag
tgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_114547682_114548701
seq2: B6Ng01-217N04.b_102_1134 (reverse)

seq1  ACTCTGCCTCCTGAGGGCAGAGATTAAAGGCATGCAGCACTGTGTA-TCT  49
      ||||||| ||||||||||| |||||||||||||||||||||  ||| |||
seq2  ACTCTGCTTCCTGAGGGCAAAGATTAAAGGCATGCAGCACTTGGTATTCT  50

seq1  CAA-TTAATTT-AATTGATATGGGA-GACCAAGCCC--ACTG-TGGGTGT  93
      ||| ||||||| ||||||||||||| ||||||||||   ||| |||||||
seq2  CAATTTAATTTAAATTGATATGGGAGGACCAAGCCCCACCTGTTGGGTGT  100

seq1  TC-ACATTCTGTAGGCTGGGGCACCTGAACTGT-GTCAGAGTAG-AAAAG  140
      || |||||||||||||||||||||||||||||| |||||||||| |||||
seq2  TCAACATTCTGTAGGCTGGGGCACCTGAACTGTGGTCAGAGTAGAAAAAG  150

seq1  TTAACCTGTGCACCAAGCAAGCAAGGAAGCC-TGTGAGCAGTCATATTAT  189
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  TTAACCTGTGCACCTAGCAAGCAAGGAAGCCTTGTGAGCAGTCATATTAT  200

seq1  TGTTATT-ACTATTCTTATTAATATT-AAAATTTCATCTTTATATTATAA  237
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  TGTTATTAACTATTCTTATTAATATTAAAAATTTCATCTTTATATTATAA  250

seq1  TCAATCATTTATCATCATCACTCTACTCTTGACTGTTGGTGTGCTGTGAC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCATTTATCATCATCACTCTACTCTTGACTGTTGGTGTGCTGTGAC  300

seq1  TTAGTCCCTCAAGTTCTTGCCACTGTGGCTTCCCGACAACATAGAGTATA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCCTCAAGTTCTTGCCACTGTGGCTTCCCGACAACATAGAGTATA  350

seq1  ACTAGGAATTGTAAGCTAAAAGAAACCCCTTTGTTTCCTCAGTTGATTTG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAATTGTAAGCTAAAAGAAACCCCTTTGTTTCCTCAGTTGATTTG  400

seq1  CCCAGATACTTTATCCCAGCAGCAGAACTAAAACCAGGACAGATTTCCAC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATACTTTATCCCAGCAGCAGAACTAAAACCAGGACAGATTTCCAC  450

seq1  TGTACTCCCATGTGTGTTCTCAATGTAACCAGAAGCAAGAACCTGAGCAC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCCCATGTGTGTTCTCAATGTAACCAGAAGCAAGAACCTGAGCAC  500

seq1  TTGTGCACTGATGCTTAAAAACAACACTAGTCACAGAAACCAAGAAGTGG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCACTGATGCTTAAAAACAACACTAGTCACAGAAACCAAGAAGTGG  550

seq1  GACCTGGGGTAGAGCTCAGCTGGGACAGTGAGCATCCAGCATTCCTGAAG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGGGTAGAGCTCAGCTGGGACAGTGAGCATCCAGCATTCCTGAAG  600

seq1  CCTGAGGTTCCGGTTCCCAGGACCGAATGAAAAGTGGCTTTGATGGCACA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGTTCCGGTTCCCAGGACCGAATGAAAAGTGGCTTTGATGGCACA  650

seq1  AACCTTAAATCTCAGTATTCAGGAGGTGGAGGCGGGAGGTTCGGAATATC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTAAATCTCAGTATTCAGGAGGTGGAGGCGGGAGGTTCGGAATATC  700

seq1  AAGATCGTCAAACCATGGCCATCAACAAAGAATGAAGTCTGATAGGAACT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCGTCAAACCATGGCCATCAACAAAGAATGAAGTCTGATAGGAACT  750

seq1  ACACTTCAGATCCACCCTGAAAATGTTATGCTAAATGAAAAAAAGCCAGG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCAGATCCACCCTGAAAATGTTATGCTAAATGAAAAAAAGCCAGG  800

seq1  CCCAAGGGCCAGATGCTAATGAATTCACACAGCACAGATGTTGAATCCAT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGGCCAGATGCTAATGAATTCACACAGCACAGATGTTGAATCCAT  850

seq1  AAGGATAGAAGATGAAATAGACATCACGGAGAGAAAGAAACAAAAGATCC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAGAAGATGAAATAGACATCACGGAGAGAAAGAAACAAAAGATCC  900

seq1  CTGTTTAATATGTGTGATTCCTGACTGGGGAATTTAAACGTTCTATAGGG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAATATGTGTGATTCCTGACTGGGGAATTTAAACGTTCTATAGGG  950

seq1  AATGTCAGTACGTTGCTCACACTGCTGAGCTTCATACTTATAAACTGGGC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGTACGTTGCTCACACTGCTGAGCTTCATACTTATAAACTGGGC  1000

seq1  CAGTGAGATAGGTCAGCAGGGAGTGGTGCTTGC  1020
      |||||||||||||||||||||||||||||||||
seq2  CAGTGAGATAGGTCAGCAGGGAGTGGTGCTTGC  1033

seq1: chr5_114359744_114359950
seq2: B6Ng01-217N04.g_71_277

seq1  TTGTTGCAGGAATTAAGATAAACTGCCACCTCAAAACAGAAGGCACACGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCAGGAATTAAGATAAACTGCCACCTCAAAACAGAAGGCACACGC  50

seq1  CTTTAGTCCCAACACTGAGGAGGCTGAGGCAGGTGGATCTCCGTCAGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTCCCAACACTGAGGAGGCTGAGGCAGGTGGATCTCCGTCAGTAG  100

seq1  TTCCAGGCCAGCCTGGTCTACATACTGAGTTCCAGGACATCCAGGGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGCCAGCCTGGTCTACATACTGAGTTCCAGGACATCCAGGGATAT  150

seq1  GTAAAGAAACTCTGTCTCTAAATAAGTAAATAAAATAAAATTAGGCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAAACTCTGTCTCTAAATAAGTAAATAAAATAAAATTAGGCAAAG  200

seq1  TGTGTGT  207
      |||||||
seq2  TGTGTGT  207