BAC Information

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BAC

Clone NameB6Ng01-218E19
Chromosome5 (Build37)
Map Location 13,916,116 - 14,096,216
singlet/doubletdoublet
Overlap geneSema3e, LOC100042957
Upstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218E19.bB6Ng01-218E19.g
ACCGA034465GA034466
length1,0381,098
definitionB6Ng01-218E19.b B6Ng01-218E19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,916,116 - 13,916,701)(14,095,352 - 14,096,216)
sequence
gaattcctctaaatgagagattctggcttgaaggctgtcttcttagcttg
tcacctggctctgggaaggaaaacaccaacatatattgtgacaggcctcc
agacctaagtactttccataatgggaagtaccatcttagcacaatagaca
acatgatggaagtgctattcaggtctcaaaacccatcgcccaagtaccaa
cacctgccagaaaaaaaacaaaaacacaaaggtagagtcctacaaaattc
ataattcaggaaagttgctaggcatacttagccttgccttttagcttctg
tatttctgtttctagatagtgactcttgataacagaagtgtgtcaaccca
gaatatggcttttatgctttaaagcccaccttaagaaaatctctggactg
tacttgggtcttgaatacccagtatagttgctggctggacaatttctatt
gacctcaacccacgtccaaatagtattctctggtggatatttcacatttc
tgggaggccccagtgacatagaccttgagacacaatggagcagctaaaga
gtgtagttgtcaaccaatttctagggggatgcacaacatgagatgcccca
ggtctccaggactctctttgatcaattttttcctaatgcctcagaggagt
ttgacaccttgaactggctggttttgtgagtcatcttgacacaagctgga
gttatcacagagaaaggagcttcaattgagaaaatgcttccatgagatct
agctgtaaggcattttctcaattagtgatcaagtgggcaggactcctcgt
gggtggtgacgtccttgggctggtagtcttgggttctataagaaggaaag
ctgagcaagccagaggaagcaagacagtaacatccctccatggcctctgc
attagctcctgcttcctgacctgcttgagttccagttctgacttctttgg
tgatgaacagcagtatggaagtgtaagctgaataaacccttccttctcca
acctgctcttggtcatataggtttgtacaggaatagaa

gaattctcagaaagctaaaaacaagtctccatatggcccagcaacatcac
cccttctcacattctcaacacctagacacccacagatgcttgctcagcca
tgttcactgatgctctactcacagtaggtagaaaattgaaacaatctaaa
tttcggctgacaagttgataagataatacactgcattttcacagtggaac
tatgaagaaaatgaagtcaagaaatctatctgcaggcaaatggatttatc
taaaaggcattatattaaccttgtaacccaggcctataaaatgaaaagtc
acagtttcttatgtgtagttctttgctacaactctttacatgtgagtata
cagccttgagtaatggcagaagacaggaagaagggacatgaggagtgggg
aaaagcccctacagcaagagctgaatggccctctcacatcacttaccacc
atctgaaaacaaagatatttacatgacaattcatagtcgtaacaaaaata
cagtaagaaaattacagtagcagtgaaaagagttttatggttgggagctt
accacaacatgaggagctgtattaaagggtgaaagcattgggaaaattga
gaagcactgccctagagagctaaacatatctagtggggcttcatggttgt
aacaactccatgcacgccattgtttgagaaagagctgccacaaacgtctt
tacttttgtaggctcccaacagcagtgtgagagttctgatttttcatatt
ctctctttgatttaccttcataattctagttctctgcacgttaaggtggt
tttgattaatagttaaataacttttgtttgttggctgtctgtaggtccct
tttggaaaatgtctactcaagagttcttgcctcccatgatacccaaacgt
tttttagcaagcatatctgcaaattccagtttccttctcacaagatacaa
tatttaattttaaacttactatataagatatcaaatttttttttaaaaat
tggtcttgttaaagttgagtgagaggaagtggaagaccttggagagataa
catcaaaatgtattgtatgaaaacaaatttactaaataaataaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13916116_13916701
seq2: B6Ng01-218E19.b_50_635

seq1  GAATTCCTCTAAATGAGAGATTCTGGCTTGAAGGCTGTCTTCTTAGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTAAATGAGAGATTCTGGCTTGAAGGCTGTCTTCTTAGCTTG  50

seq1  TCACCTGGCTCTGGGAAGGAAAACACCAACATATATTGTGACAGGCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGGCTCTGGGAAGGAAAACACCAACATATATTGTGACAGGCCTCC  100

seq1  AGACCTAAGTACTTTCCATAATGGGAAGTACCATCTTAGCACAATAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTAAGTACTTTCCATAATGGGAAGTACCATCTTAGCACAATAGACA  150

seq1  ACATGATGGAAGTGCTATTCAGGTCTCAAAACCCATCGCCCAAGTACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATGGAAGTGCTATTCAGGTCTCAAAACCCATCGCCCAAGTACCAA  200

seq1  CACCTGCCAGAAAAAAAACAAAAACACAAAGGTAGAGTCCTACAAAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCAGAAAAAAAACAAAAACACAAAGGTAGAGTCCTACAAAATTC  250

seq1  ATAATTCAGGAAAGTTGCTAGGCATACTTAGCCTTGCCTTTTAGCTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCAGGAAAGTTGCTAGGCATACTTAGCCTTGCCTTTTAGCTTCTG  300

seq1  TATTTCTGTTTCTAGATAGTGACTCTTGATAACAGAAGTGTGTCAACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGTTTCTAGATAGTGACTCTTGATAACAGAAGTGTGTCAACCCA  350

seq1  GAATATGGCTTTTATGCTTTAAAGCCCACCTTAAGAAAATCTCTGGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGGCTTTTATGCTTTAAAGCCCACCTTAAGAAAATCTCTGGACTG  400

seq1  TACTTGGGTCTTGAATACCCAGTATAGTTGCTGGCTGGACAATTTCTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGGTCTTGAATACCCAGTATAGTTGCTGGCTGGACAATTTCTATT  450

seq1  GACCTCAACCCACGTCCAAATAGTATTCTCTGGTGGATATTTCACATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAACCCACGTCCAAATAGTATTCTCTGGTGGATATTTCACATTTC  500

seq1  TGGGAGGCCCCAGTGACATAGACCTTGAGACACAATGGAGCAGCTAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCCCCAGTGACATAGACCTTGAGACACAATGGAGCAGCTAAAGA  550

seq1  GTGTAGTTGTCAACCAATTTCTAGGGGGATGCACAA  586
      ||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTTGTCAACCAATTTCTAGGGGGATGCACAA  586


seq1: chr5_14095352_14096216
seq2: B6Ng01-218E19.g_300_1154 (reverse)

seq1  TTTATTTATTTATTTAAGTTAAAATTTGTTTTCATACAATACATTTTGAT  50
      ||||||||||||||| |||  |||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTT-AGT--AAATTTGTTTTCATACAATACATTTTGAT  47

seq1  GTTTATCTCCTCCAAGGTCTTCCCACTTCCCTCTCCACTCAACTTTAACA  100
      | |||||| |||||||||||| |||||| ||||| |||||||||||||||
seq2  G-TTATCT-CTCCAAGGTCTT-CCACTT-CCTCT-CACTCAACTTTAACA  92

seq1  AGACCAATTTTTTAAAAAAAAATTTGATATCCTTATATAGTAAGTTTAAA  150
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  AGACCAA-TTTTTAAAAAAAAATTTGATAT-CTTATATAGTAAGTTTAAA  140

seq1  ATTAAATATTGTATCTTGTGAGAAGGAAACTGGAATTTGCAGATATGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATTGTATCTTGTGAGAAGGAAACTGGAATTTGCAGATATGCTT  190

seq1  GCTAAAAAACGTTTGGGTATCATGGGAGGCAAGAACTCTTGAGTAGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAAACGTTTGGGTATCATGGGAGGCAAGAACTCTTGAGTAGACAT  240

seq1  TTTCCAAAAGGGACCTACAGACAGCCAACAAACAAAAGTTATTTAACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAAAGGGACCTACAGACAGCCAACAAACAAAAGTTATTTAACTAT  290

seq1  TAATCAAAACCACCTTAACGTGCAGAGAACTAGAATTATGAAGGTAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAAACCACCTTAACGTGCAGAGAACTAGAATTATGAAGGTAAATC  340

seq1  AAAGAGAGAATATGAAAAATCAGAACTCTCACACTGCTGTTGGGAGCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGAATATGAAAAATCAGAACTCTCACACTGCTGTTGGGAGCCTA  390

seq1  CAAAAGTAAAGACGTTTGTGGCAGCTCTTTCTCAAACAATGGCGTGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTAAAGACGTTTGTGGCAGCTCTTTCTCAAACAATGGCGTGCATG  440

seq1  GAGTTGTTACAACCATGAAGCCCCACTAGATATGTTTAGCTCTCTAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTTACAACCATGAAGCCCCACTAGATATGTTTAGCTCTCTAGGGC  490

seq1  AGTGCTTCTCAATTTTCCCAATGCTTTCACCCTTTAATACAGCTCCTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTCTCAATTTTCCCAATGCTTTCACCCTTTAATACAGCTCCTCAT  540

seq1  GTTGTGGTAAGCTCCCAACCATAAAACTCTTTTCACTGCTACTGTAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGTAAGCTCCCAACCATAAAACTCTTTTCACTGCTACTGTAATTT  590

seq1  TCTTACTGTATTTTTGTTACGACTATGAATTGTCATGTAAATATCTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTGTATTTTTGTTACGACTATGAATTGTCATGTAAATATCTTTGT  640

seq1  TTTCAGATGGTGGTAAGTGATGTGAGAGGGCCATTCAGCTCTTGCTGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATGGTGGTAAGTGATGTGAGAGGGCCATTCAGCTCTTGCTGTAG  690

seq1  GGGCTTTTCCCCACTCCTCATGTCCCTTCTTCCTGTCTTCTGCCATTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTTCCCCACTCCTCATGTCCCTTCTTCCTGTCTTCTGCCATTACT  740

seq1  CAAGGCTGTATACTCACATGTAAAGAGTTGTAGCAAAGAACTACACATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGTATACTCACATGTAAAGAGTTGTAGCAAAGAACTACACATAA  790

seq1  GAAACTGTGACTTTTCATTTTATAGGCCTGGGTTACAAGGTTAATATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGTGACTTTTCATTTTATAGGCCTGGGTTACAAGGTTAATATAAT  840

seq1  GCCTTTTAGATAAAT  865
      |||||||||||||||
seq2  GCCTTTTAGATAAAT  855


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