BAC Information

Click to search

BAC

Clone NameB6Ng01-218H05
Chromosome5 (Build37)
Map Location 128,186,767 - 128,353,280
singlet/doubletdoublet
Overlap geneTmem132d
Upstream geneLOC100040327, Tmem132c, Slc15a4, Glt1d1
Downstream geneFzd10, LOC100040398, Piwil1, Rimbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218H05.bB6Ng01-218H05.g
ACCGA034576GA034577
length1,185202
definitionB6Ng01-218H05.b B6Ng01-218H05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,352,091 - 128,353,280)(128,186,767 - 128,186,966)
sequence
gaattctcagtttgaccaggtgactggaggtgtttacaagctttatgcta
cagatgcggaaacagaggcacaaagctgccactaatttgcaaagtcacag
agatagcaggagcaggaaatatggcccctacaagctgtggagtgagcatg
tggcaggcagaaggacagccaagcgctcttatccctcaaggtgaacgggg
ccttgagagccattaaacctgcccaccaagcacaccagttactcatcttc
atttctgccctagatatggctatgtggctcctgcccagggcctcttgtca
ggtacatcgaggtggcggctcagacttcttacagagacctcattggtctc
atatctggtggattactgttgggcttctgctgagtctgccatgcagatcc
ctctgcatgtgactcaggatttctcctggccctagcagctaagtcccaag
agtaaatatccctgggaaaaagccggataaacccacaatgccttgtattg
gctcacctcaggcgtcacccagcttcctagactccagccacgtgtccctg
tagccaggtggcattgagggagaaacactagactcaacctccttgtagca
atgccaaagaactattcaggaatcaatacatcacctcatttcccccttag
ctttactaggttttaattgacaagaaagtgctctacagtgagcaggaggg
tgttttggttacactctgaaatgattgccatcatcggagtagataataga
gccgacagctcacatagtttgtttgatattgttattggaattagagcttt
aagcctgactcaactggcaagtttcaagcgtctagaacattctcaccaac
cacagccatccagggcataaccatctccaagttgaaattataggctcctc
tctttctgatcttctcatacctaattaaagcagtctccttgagatactgg
gtttatccagtaagagacccaaccaagaatacgtaaagtgactaaagaca
gagaaccaaacgcagtagaaacatctcatgtaccataccaccatttgggt
acttgtgatgattaattccaaatgcaacttgaccacaccccagtcactaa
aagtctgattaaagacttatatgtagatgtagtgcttcaggtatgtacgt
tctggccaggactgaatttttctagttaggttgat

atggttgtgggggtagtgcaccctggtgtgtgtgtgtgtgtgcatatgcg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgcgcgggaatg
tacgcatccttgtgcattttatccactgaaccatcttgccacctgacata
tacaatgtttctttttttgtttttttttttgtttctttttttttttattt
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_128352091_128353280
seq2: B6Ng01-218H05.b_45_1229 (reverse)

seq1  ATCAACTTAACTAGGAAAAAAAATCAGTCCTGCCCAG-ACGTACATA-CT  48
      |||||| |||||||   ||||| ||||||||| |||| ||||||||| ||
seq2  ATCAACCTAACTAG---AAAAATTCAGTCCTGGCCAGAACGTACATACCT  47

seq1  GAGCAACCTCATCTACATAT-AGTCTTTTATTCAGACTTTTAGGTGACTG  97
      ||   ||  ||||||||||| |||| |||| ||||||||||| |||||||
seq2  GAAGCACTACATCTACATATAAGTC-TTTAATCAGACTTTTA-GTGACTG  95

seq1  GGGTTGTGTCAAGTTGCAATTTGGAATTAATCATCACAAGTA-CCAAATG  146
      ||||   |||||||||| |||||||||||||||||||||||| |||||||
seq2  GGGTGTGGTCAAGTTGC-ATTTGGAATTAATCATCACAAGTACCCAAATG  144

seq1  GTGGTATGGTACATGAGATGTTTCTACTGCGTTTGGTTCTCTGTCCTTAG  196
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTGGTATGGTACATGAGATGTTTCTACTGCGTTTGGTTCTCTGTCTTTAG  194

seq1  TCACCTTACGTATTCTTGGTTGGGTCTCTTTACTGGATAAACCCAGTATC  246
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCACTTTACGTATTCTTGGTTGGGTCTC-TTACTGGATAAACCCAGTATC  243

seq1  TCAAGGAGACTGCTTTAATTAGGTATTGAGAAGATCAGAAAGAGAGGAGC  296
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCAAGGAGACTGCTTTAATTAGGTA-TGAGAAGATCAGAAAGAGAGGAGC  292

seq1  CTATAAATTTCAACTTGGAGATGGTTATGCCCTGGATGGCTGTGGTTGGT  346
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAT-AATTTCAACTTGGAGATGGTTATGCCCTGGATGGCTGTGGTTGGT  341

seq1  GAGAATGTTCTAGACGCTTGAAACTTGCCAGTTGAGTCAGGCTTAAAGCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGTTCTAGACGCTTGAAACTTGCCAGTTGAGTCAGGCTTAAAGCT  391

seq1  CTAATTCCAATAACAATATCAAACAAACTATGTGAGCTGTCGGCTCTATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCCAATAACAATATCAAACAAACTATGTGAGCTGTCGGCTCTATT  441

seq1  ATCTACTCCGATGATGGCAATCATTTCAGAGTGTAACCAAAACACCCTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTCCGATGATGGCAATCATTTCAGAGTGTAACCAAAACACCCTCC  491

seq1  TGCTCACTGTAGAGCACTTTCTTGTCAATTAAAACCTAGTAAAGCTAAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACTGTAGAGCACTTTCTTGTCAATTAAAACCTAGTAAAGCTAAGG  541

seq1  GGGAAATGAGGTGATGTATTGATTCCTGAATAGTTCTTTGGCATTGCTAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATGAGGTGATGTATTGATTCCTGAATAGTTCTTTGGCATTGCTAC  591

seq1  AAGGAGGTTGAGTCTAGTGTTTCTCCCTCAATGCCACCTGGCTACAGGGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGTTGAGTCTAGTGTTTCTCCCTCAATGCCACCTGGCTACAGGGA  641

seq1  CACGTGGCTGGAGTCTAGGAAGCTGGGTGACGCCTGAGGTGAGCCAATAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGCTGGAGTCTAGGAAGCTGGGTGACGCCTGAGGTGAGCCAATAC  691

seq1  AAGGCATTGTGGGTTTATCCGGCTTTTTCCCAGGGATATTTACTCTTGGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTGTGGGTTTATCCGGCTTTTTCCCAGGGATATTTACTCTTGGG  741

seq1  ACTTAGCTGCTAGGGCCAGGAGAAATCCTGAGTCACATGCAGAGGGATCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCTGCTAGGGCCAGGAGAAATCCTGAGTCACATGCAGAGGGATCT  791

seq1  GCATGGCAGACTCAGCAGAAGCCCAACAGTAATCCACCAGATATGAGACC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCAGACTCAGCAGAAGCCCAACAGTAATCCACCAGATATGAGACC  841

seq1  AATGAGGTCTCTGTAAGAAGTCTGAGCCGCCACCTCGATGTACCTGACAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTCTCTGTAAGAAGTCTGAGCCGCCACCTCGATGTACCTGACAA  891

seq1  GAGGCCCTGGGCAGGAGCCACATAGCCATATCTAGGGCAGAAATGAAGAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCTGGGCAGGAGCCACATAGCCATATCTAGGGCAGAAATGAAGAT  941

seq1  GAGTAACTGGTGTGCTTGGTGGGCAGGTTTAATGGCTCTCAAGGCCCCGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAACTGGTGTGCTTGGTGGGCAGGTTTAATGGCTCTCAAGGCCCCGT  991

seq1  TCACCTTGAGGGATAAGAGCGCTTGGCTGTCCTTCTGCCTGCCACATGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTGAGGGATAAGAGCGCTTGGCTGTCCTTCTGCCTGCCACATGCT  1041

seq1  CACTCCACAGCTTGTAGGGGCCATATTTCCTGCTCCTGCTATCTCTGTGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCACAGCTTGTAGGGGCCATATTTCCTGCTCCTGCTATCTCTGTGA  1091

seq1  CTTTGCAAATTAGTGGCAGCTTTGTGCCTCTGTTTCCGCATCTGTAGCAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAAATTAGTGGCAGCTTTGTGCCTCTGTTTCCGCATCTGTAGCAT  1141

seq1  AAAGCTTGTAAACACCTCCAGTCACCTGGTCAAACTGAGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTGTAAACACCTCCAGTCACCTGGTCAAACTGAGAATTC  1185


seq1: chr5_128186767_128186966
seq2: B6Ng01-218H05.g_72_273

seq1  ATGGTTGTGGGGGTAGTGCACCCTGGTGTGTGTGTGTGTGTGCATATGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTGGGGGTAGTGCACCCTGGTGTGTGTGTGTGTGTGCATATGCG  50

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGCGCGGGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGCGCGGGAATG  100

seq1  TACGCATCCTTGTGCATTTTATCCACTGAACCATCTTGCCACCTGACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCATCCTTGTGCATTTTATCCACTGAACCATCTTGCCACCTGACATA  150

seq1  TACAATGTTTCTTTTTTTG--TTTTGTTTTGTTTCTTTTTTTTTTTTTTT  198
      |||||||||||||||||||  |||| |||||||||||||||||||| |||
seq2  TACAATGTTTCTTTTTTTGTTTTTTTTTTTGTTTCTTTTTTTTTTTATTT  200

seq1  TT  200
      ||
seq2  TT  202


| Home | SequenceCutter | Blast | Download |