BAC Information

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BAC

Clone NameB6Ng01-218J06
Chromosome5 (Build37)
Map Location 55,315,678 - 55,316,212
singlet/doubletsinglet
Overlap genenone
Upstream geneStim2, EG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218J06.bB6Ng01-218J06.g
ACCGA034668GA034669
length528934
definitionB6Ng01-218J06.b B6Ng01-218J06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
agggcccattccctgcatttgaggctgtgcagtttgatgcatgtggcccc
catgtactccatgaacaagtacaatgacagtcttcactggagacagtatt
tactctttgccatattaatttctcagccttgtgttcctttttctatcact
actcctttgtttaatttgaagaaagactccttcatacaccattagtgttt
aagcaaaggataattagtattttttcatacaaactggatcaggatgaaaa
ttatggcacatgaaactttaaaatgaatcccacataaccaatttcctggc
cattcagttctgtttaatatgtaactctttgtttgaaggaggttgtacat
atgcagagacatctctttccttggtctttcaaactttatataccccagta
gaggggaacacaagggccaagaagtggaagtgggtgggtagggaagcagg
gtggggggagggtataggggatcttctggatagcattggttaagtaaatg
aacataatatctataaataataataata

gaattctttactaaaatcatgtggtcctgagcatgttctttgcttgtttg
tttgtttgttttgtagggggactttggtgagttcttctatttccttagaa
gttataggactattgaaaaagcttacttgttcttgattcaactgtagtat
gtggtatctatctagaaaacaattcatttgttcagattttccaattttat
ggagtacagtcttttgaagtaagacctaatgattctctggatttcttcag
tgtctgtagtactggcccactgttcatttctgatttttaaaatttggata
ctatctctctggtttttagtgcatttggctaagggttttcctatcttgtt
gattatctcaaagaactagctcttggttttgttgattctatgttttgttc
tctttgtttctaattgattgatttcagccttgagtgtgattatatcctgc
tgtctactccatttgggtgtgtgtgtgtttgcttttttttttttttcttg
agctttgagctttgagctttgaggtgtgcttttaaattgctagtgtgaga
tctttctcatttcttcatgaaggaacctagtgctataaactttcctctta
gcactgcttttgtcttttcccataaattcgaatgtgttataccttcattt
tcattttgagaaagtgtttactttctttatttctttccttcctaacacag
ttatcattgagtagagagttgttcagtttccaagagctcgcaagcttccc
gttctttctgttgttgaagaccagctttattcccttagtggtctgataag
atacaaggagttatttctattttcttgtgtctgttgagacttgctttggg
atgcactaatgctcagttttgaagactgttgctaaaggtgctgagagata
tattggttcgtgtatgggtgatattctgtcctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_55315678_55316212
seq2: B6Ng01-218J06.b_45_578 (reverse)

seq1  TATTATTATTATTTATTAGATATTTTCTTCATTTACATTTCAAATGCTAT  50
      ||||||||||||||| |||||||| | ||||||||| |  | ||||||||
seq2  TATTATTATTATTTA-TAGATATTATGTTCATTTACTTAACCAATGCTAT  49

seq1  CCCGAAGGTCCCCTATACCCTCCCCCCACCCTGCTTCCCTACCCACCCAC  100
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGATCCCCTATACCCTCCCCCCACCCTGCTTCCCTACCCACCCAC  99

seq1  TTCCACTTCTTGGCCCTTGTGTTCCCCTCTACTGGGGTATATAAAGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTTCTTGGCCCTTGTGTTCCCCTCTACTGGGGTATATAAAGTTTG  149

seq1  AAAGACCAAGGAAAGAGATGTCTCTGCATATGTACAACCTCCTTCAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCAAGGAAAGAGATGTCTCTGCATATGTACAACCTCCTTCAAACA  199

seq1  AAGAGTTACATATTAAACAGAACTGAATGGCCAGGAAATTGGTTATGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTACATATTAAACAGAACTGAATGGCCAGGAAATTGGTTATGTGG  249

seq1  GATTCATTTTAAAGTTTCATGTGCCATAATTTTCATCCTGATCCAGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATTTTAAAGTTTCATGTGCCATAATTTTCATCCTGATCCAGTTTG  299

seq1  TATGAAAAAATACTAATTATCCTTTGCTTAAACACTAATGGTGTATGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAAAATACTAATTATCCTTTGCTTAAACACTAATGGTGTATGAAG  349

seq1  GAGTCTTTCTTCAAATTAAACAAAGGAGTAGTGATAGAAAAAGGAACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTTCTTCAAATTAAACAAAGGAGTAGTGATAGAAAAAGGAACACA  399

seq1  AGGCTGAGAAATTAATATGGCAAAGAGTAAATACTGTCTCCAGTGAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGAAATTAATATGGCAAAGAGTAAATACTGTCTCCAGTGAAGAC  449

seq1  TGTCATTGTACTTGTTCATGGAGTACATGGGGGCCACATGCATCAAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGTACTTGTTCATGGAGTACATGGGGGCCACATGCATCAAACTG  499

seq1  CACAGCCTCAAATGCAGGGAATGGGCCCTGAATTC  535
      |||||||||||||||||||||||||||||||||||
seq2  CACAGCCTCAAATGCAGGGAATGGGCCCTGAATTC  534


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