BAC Information

Click to search

BAC

Clone NameB6Ng01-218O03
Chromosome5 (Build37)
Map Location 14,598,443 - 14,599,273
singlet/doubletsinglet
Overlap genePclo
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218O03.bB6Ng01-218O03.g
ACCGA034889GA034890
length831327
definitionB6Ng01-218O03.b B6Ng01-218O03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatctggggacttacagaatttcaaacttcatctttatgcacagg
gatattcagcttctctacggccatttccgttatcagattgaggctaagtc
cctatggtcctactttcctgagggttttttttttctttaaatactcttga
ggttttttttttttttctttaaatgctcttgagtgtttcaagaatataac
tttatatttctctagttatattttatttttatattatatgatagattaca
ttaaattttagtattttgatgatgatacttagaataagacattcttggat
atggcatatgatgctttttaattcaattttgttgaatttaatctggtaat
ttttctaggaactcattttgtttagtcattctagggaagtttataactca
tcaagatacaattgataaagagtgtgtatgtgtgaaattaaagtatgtca
cctgaagctaagaaatggcctcatgtatattaataatattaccataatag
taatgatagcttatgctgttgagctatttattccagacaatgctgtaagt
agcttgagaatatttactcttaaaaagaggcattgtttattttctagtat
ccttattgtaattttataaatgccaatagagtgaagtactaacaagttat
ataatattcctcagagttggatttcacatccaaactacctcactccagag
gtcactttacatccatcacttcctacaggggatcaggctcccctgtagta
aggagaacaacaaactgggccaagggtggggaagaccatagatacagact
tggtagggaagttttgttgttgttgttgttg
caggacagccagggctacacaaagaaaccctgtctcaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaacgaatgaaagaaagaaagtacaaatta
cagagtagaggaaaaggatttctgtgtaatgtacttgtcatggaagcatg
aacatctgaatttgatctccaagaaaccacataaaaaagctgagcatggt
taccattgcttgtaaccttcagcaccttggaggctgacacaggtcggccc
ctgggccttctggaaaaccagggtagctggttcaaacagctcccggttct
gtaagggagtgtgattgaaaaaacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14598443_14599273
seq2: B6Ng01-218O03.b_43_873

seq1  GAATTCATCTGGGGACTTACAGAATTTCAAACTTCATCTTTATGCACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGGGGACTTACAGAATTTCAAACTTCATCTTTATGCACAGG  50

seq1  GATATTCAGCTTCTCTACGGCCATTTCCGTTATCAGATTGAGGCTAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCAGCTTCTCTACGGCCATTTCCGTTATCAGATTGAGGCTAAGTC  100

seq1  CCTATGGTCCTACTTTCCTGAGGGTTTTTTTTTTCTTTAAATACTCTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGTCCTACTTTCCTGAGGGTTTTTTTTTTCTTTAAATACTCTTGA  150

seq1  GGTTTTTTTTTTTTTTCTTTAAATGCTCTTGAGTGTTTCAAGAATATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTTTTTTTTCTTTAAATGCTCTTGAGTGTTTCAAGAATATAAC  200

seq1  TTTATATTTCTCTAGTTATATTTTATTTTTATATTATATGATAGATTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTCTCTAGTTATATTTTATTTTTATATTATATGATAGATTACA  250

seq1  TTAAATTTTAGTATTTTGATGATGATACTTAGAATAAGACATTCTTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTTAGTATTTTGATGATGATACTTAGAATAAGACATTCTTGGAT  300

seq1  ATGGCATATGATGCTTTTTAATTCAATTTTGTTGAATTTAATCTGGTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATATGATGCTTTTTAATTCAATTTTGTTGAATTTAATCTGGTAAT  350

seq1  TTTTCTAGGAACTCATTTTGTTTAGTCATTCTAGGGAAGTTTATAACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGGAACTCATTTTGTTTAGTCATTCTAGGGAAGTTTATAACTCA  400

seq1  TCAAGATACAATTGATAAAGAGTGTGTATGTGTGAAATTAAAGTATGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATACAATTGATAAAGAGTGTGTATGTGTGAAATTAAAGTATGTCA  450

seq1  CCTGAAGCTAAGAAATGGCCTCATGTATATTAATAATATTACCATAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGCTAAGAAATGGCCTCATGTATATTAATAATATTACCATAATAG  500

seq1  TAATGATAGCTTATGCTGTTGAGCTATTTATTCCAGACAATGCTGTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATAGCTTATGCTGTTGAGCTATTTATTCCAGACAATGCTGTAAGT  550

seq1  AGCTTGAGAATATTTACTCTTAAAAAGAGGCATTGTTTATTTTCTAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGAGAATATTTACTCTTAAAAAGAGGCATTGTTTATTTTCTAGTAT  600

seq1  CCTTATTGTAATTTTATAAATGCCAATAGAGTGAAGTACTAACAAGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTGTAATTTTATAAATGCCAATAGAGTGAAGTACTAACAAGTTAT  650

seq1  ATAATATTCCTCAGAGTTGGATTTCACATCCAAACTACCTCACTCCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTCCTCAGAGTTGGATTTCACATCCAAACTACCTCACTCCAGAG  700

seq1  GTCACTTTACATCCATCACTTCCTACAGGGGATCAGGCTCCCCTGTAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTTACATCCATCACTTCCTACAGGGGATCAGGCTCCCCTGTAGTA  750

seq1  AGGAGAACAACAAACTGGGCCAAGGGTGGGGAAGACCATAGATACAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAACAACAAACTGGGCCAAGGGTGGGGAAGACCATAGATACAGACT  800

seq1  TGGTAGGGAAGTTTTGTTGTTGTTGTTGTTG  831
      |||||||||||||||||||||||||||||||
seq2  TGGTAGGGAAGTTTTGTTGTTGTTGTTGTTG  831