BAC Information

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BAC

Clone NameB6Ng01-219J13
Chromosome5 (Build37)
Map Location 94,957,671 - 94,959,093
singlet/doubletsinglet
Overlap geneLOC100041102
Upstream geneLOC100040885, LOC666064, LOC100040909, C87414, LOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744, LOC100041032, LOC100041042, LOC624421, AA792892, LOC665521, LOC665551
Downstream geneLOC665560, LOC100041115, LOC624507, LOC621203, LOC100041153, LOC665499, LOC624698, LOC100041179, LOC624655, LOC100041166, LOC665469, LOC622894, EG666121, LOC666125, EG666133, LOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219J13.bB6Ng01-219J13.g
ACCGA035386GA035387
length1,198697
definitionB6Ng01-219J13.b B6Ng01-219J13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtggtgtgactccagtagtacagtccttgcttggcattcacaa
ttaaggttataaatcactgcatgatctagacaaatggggcatgcctgtgt
tcccagaacacgtgagtctgaatagaggctcagaaatccaatggtatctt
tgctgtaatagatagtgtgaggcaaacctgttctatattaaaatattttc
aaaacaagttaaaaagtgtgtcagggagaggcataacatcaatgattcta
aaaagtcggagcaggtttgagaaaggaaggatcagtggacatggagagat
gatcagggtttcctgggcagagataaaatctctaggattaggagattttc
agaatacctgatatttgcagaacacataaattcaatgcccaacaagtgtg
attgtggcttggaactacctttagcttcagtgtttctggaatcctcttcc
ctttcctagacttaataagcactatgacaacatgcagacacacacacaca
cacacacactcacacagagaccttggatgattcagacctaaaggggaaag
gctcagggaatcctgtagaagagaacaaagaaagaggaatagagtcagag
gaaatggtggacatcaaggaagccagagcttcttaaacaaacacaggaga
actaacacacacagagagagactaaagtagactaaagtagaattctcagg
gcttgtgtgggtctattccacatggggtatcagtgttgagaaaaaagtag
actgacacaagctcctatcccaacccagaaattactgaaaaccatttaca
aatgaaaaattagttttctcaaatggactctccttgagggtacaagtctc
attcatatgggcaggtctactggccaacacaaagtgaactcagaggcctc
tttggaggtcctaggtctcataatgttttaacaggcctcttttgggtttt
tttggatttgcttttaatttaattctttttttttttaattaaccttaaat
cccccactaaactgtcttttccagtcagaccctaagttcactacttctag
ttactcttacatgtctcttgagtaaggtgcaggtccctggtatcccacac
ctggtacttaaggattttagcaaggcatatcctctccaactgaagcaggc
aagcgactcagctgaagatcacgccccataaacaggcaattggccttc
gaattctttggtttctccatctatggtaattgagaattttgctgggtgta
gtagcctgggctggcatttctgttctcttaggatctgtataacatctgtc
caggcttttgtagtctctggtgagaagtctggagtaattctaataggcct
gcctttatatgttacttaaccttttttccgttactgattttaaagttctg
tctttatttagttcatttgttgttctgattattatgtgttggttggaatt
tcttttctgctccagtctatttggagttctgtaggcttcttgtatgttca
tgggcatctctttctttagggatggggagttttcttccataattttgttg
aagatatttgctggccctttaagttgaaaatcttctttctcatctactcc
tattatcagcaagtttggtcttctcgtggtatcctggatttcctgaatgt
tttgggttaggatctgtttccattatgcattttctttgattgttatatcc
atgttccctatgggatcttctgcacctgagattctctcttccatctcttg
tattatgttgctgatgctcacatctatggttcctaatttctttcctaggg
tttctatttccagagttgttttcctttggcttttcttcattgtttctact
ttcatttttagatcatgggtggtttttgttcaatttccatcccgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_94957671_94959093
seq2: B6Ng01-219J13.b_45_1242

seq1  GAATTCTGTGGTGTGACTCCAGTAGTACAGTCCTTGCTTGGCATTCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGTGTGACTCCAGTAGTACAGTCCTTGCTTGGCATTCACAA  50

seq1  TTAAGGTTATAAATCACTGCATGATCTAGACAAATGGGGCATGCCTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTTATAAATCACTGCATGATCTAGACAAATGGGGCATGCCTGTGT  100

seq1  TCCCAGAACACGTGAGTCTGAATAGAGGCTCAGAAATCCAATGGTATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAACACGTGAGTCTGAATAGAGGCTCAGAAATCCAATGGTATCTT  150

seq1  TGCTGTAATAGATAGTGTGAGGCAAACCTGTTCTATATTAAAATATTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAATAGATAGTGTGAGGCAAACCTGTTCTATATTAAAATATTTTC  200

seq1  AAAACAAGTTAAAAAGTGTGTCAGGGCGAGGCATAACATCAATGATTCTA  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAACAAGTTAAAAAGTGTGTCAGGGAGAGGCATAACATCAATGATTCTA  250

seq1  AAAAGTCGGAGCAGGTTTGAGAAAGGAAGGATCAGTGGACATGGAGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCGGAGCAGGTTTGAGAAAGGAAGGATCAGTGGACATGGAGAGAT  300

seq1  GATCAGGGTTTCCTGGGCAGAGAGAAAATCTCTAGGATTAGGAGATTTTC  350
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GATCAGGGTTTCCTGGGCAGAGATAAAATCTCTAGGATTAGGAGATTTTC  350

seq1  AGAATACCTGATATTTGCAGAACACATAAATTCAATGCCCAACAAGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACCTGATATTTGCAGAACACATAAATTCAATGCCCAACAAGTGTG  400

seq1  ATTGTGGCTTCGAACTACCTTTAGCTTCAGTGTTTCTGGAATCCTCTTCC  450
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGCTTGGAACTACCTTTAGCTTCAGTGTTTCTGGAATCCTCTTCC  450

seq1  CTTTCCTAGACTTAATAAGCACTATGACAACATGCAG------ACACACA  494
      |||||||||||||||||||||||||||||||||||||      |||||||
seq2  CTTTCCTAGACTTAATAAGCACTATGACAACATGCAGACACACACACACA  500

seq1  CACACACACTCACACAGAGACCTTGGATGATTCAGACCTAAAGGGGAAAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACTCACACAGAGACCTTGGATGATTCAGACCTAAAGGGGAAAG  550

seq1  GCTCAGGGAATCCTGTAGAAGAGAACAAAGAAAGAGGAATAGAGTCAGAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGGAATCCTGTAGAAGAGAACAAAGAAAGAGGAATAGAGTCAGAG  600

seq1  GAAATGGTGGACATCAAGGAAGCCAGAGCTTCTTAAACAAACACAGGAGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGTGGACATCAAGGAAGCCAGAGCTTCTTAAACAAACACAGGAGA  650

seq1  ACTAACACACACAGAGAGAGACTAAAGTAGACTAAAGTAGAATTCTCAGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACACACACAGAGAGAGACTAAAGTAGACTAAAGTAGAATTCTCAGG  700

seq1  GCTTGTGTGGGTCTATTCCACATGGGGTATCAGTGTTGAGAAAAAAGTAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGTGGGTCTATTCCACATGGGGTATCAGTGTTGAGAAAAAAGTAG  750

seq1  ACTGACACAAGCTCCTATCCCAAACCCAGAAATTACTGAAAACCATTTAC  794
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACTGACACAAGCTCCTATCCC-AACCCAGAAATTACTGAAAACCATTTAC  799

seq1  AAATGAAAAATTAGTTTTCTCAAATGGACTCTCCTTGAGGGTACAAGTCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAAATTAGTTTTCTCAAATGGACTCTCCTTGAGGGTACAAGTCT  849

seq1  CATTCATATGGGCAGATCTACTGGCCAACACAAAGTGAAGAACTCAGAGG  894
      ||||||||||||||| ||||||||||||||||||||   |||||||||||
seq2  CATTCATATGGGCAGGTCTACTGGCCAACACAAAGT---GAACTCAGAGG  896

seq1  CCTCTTTGGAGGTCCTAGGTCTCATAATGTTTTGACAGGCCTCTTTTGGG  944
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTCTTTGGAGGTCCTAGGTCTCATAATGTTTTAACAGGCCTCTTTTGGG  946

seq1  TTTTTGTGGATTTGCTTTTTAATTTAATTCTTTTTTTTTTTTTTTTTTTT  994
      ||||| ||||||||| ||||||||||||||                    
seq2  TTTTTTTGGATTTGC-TTTTAATTTAATTC--------------------  975

seq1  TTAAGATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACT  1044
                                                        
seq2  --------------------------------------------------  975

seq1  CCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTG  1094
                                                        
seq2  --------------------------------------------------  975

seq1  GTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTT  1144
                                                        
seq2  --------------------------------------------------  975

seq1  ACCCACTGAGCCATCTCACCAGCCCAATTCTTTTTTTTTTTTTAATTTAC  1194
                                      ||||||||||||||| ||
seq2  --------------------------------TTTTTTTTTTTAATTAAC  993

seq1  CTTAAATCCCCCACT-AACTGTTCTTTTCCAGGTCAGACCCT-AGTACAC  1242
      ||||||||||||||| ||||| ||||||||| |||||||||| ||| |||
seq2  CTTAAATCCCCCACTAAACTG-TCTTTTCCA-GTCAGACCCTAAGTTCAC  1041

seq1  TACTTCTAGGTACCTTCTTACCATGTTCTC-TGAGTAGGTGGAAGTTCCC  1291
      ||||||||| |||  ||||| |||| |||| |||||| |  | || ||||
seq2  TACTTCTAGTTAC--TCTTA-CATG-TCTCTTGAGTAAGGTGCAGGTCCC  1087

seq1  TGGGTATCCCCACACCCTGGTACTTTTAGTATTTTTAAGGCAGGGCATAT  1341
      | ||||| |||||| |||||||| || || |||||    ||| |||||||
seq2  T-GGTAT-CCCACA-CCTGGTAC-TTAAGGATTTT---AGCAAGGCATAT  1130

seq1  CCTCTCCCACTGAGGCCAGGCAAAGCAGCTCAGCTAGAAGAACACACCCC  1391
      ||||||| ||||| | ||||| ||||  ||||||| ||||| ||| ||||
seq2  CCTCTCCAACTGAAG-CAGGC-AAGCGACTCAGCT-GAAGATCACGCCCC  1177

seq1  ACAAACAGGCAATGGCTTCTGAAGTGGCCTTC  1423
      | |||||||||||           ||||||||
seq2  ATAAACAGGCAAT-----------TGGCCTTC  1198