BAC Information

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BAC

Clone NameB6Ng01-219K11
Chromosome5 (Build37)
Map Location 12,824,565 - 13,012,140
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069
Downstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219K11.bB6Ng01-219K11.g
ACCGA035426GA035427
length6611,158
definitionB6Ng01-219K11.b B6Ng01-219K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,824,565 - 12,825,225)(13,010,980 - 13,012,140)
sequence
gaattctatttgaatgtccccacatctgcacttgtacgcacatacaaaat
aaaatattaaaatgtaataggttttgaaagttaatattagtgtattaact
atgaagacactgtagtgtaatagggaatgccttatatcagtagatgctaa
tttttcccactaagcaaaaaaaaaaaaaaaaaaaaaaaagaaagaaactt
gatgtatcactttttgtataaacagtgacattcagtggtgctgttagaat
tcactaatttgtgaataagttaagggttatcaactgcttcagacttaatg
gattgcaaagaatttcagcaaatgacccttgcagattcattaaacttgat
caatcacagtgtaattgtcaagctagaatagcaattaattttcattaagc
tggaaggtcattagtacagttttagaaaaaatgactattaagttgtgatg
caaaagatttaatagtttttctataattaaaaccctttgcttaattctat
aatttcatgtggggaagaaatcaactttaaagtactcagcttttctacaa
ataaaaagtaacaacaacttagcttaggtaaacagagtgtgtatgcactt
tcatgtgtgtatgtgtgtatatgctcatgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtttg
gaattccatattttaaatatgagactcatgcttcattaaagatattgtgt
agttgtgtagaactataacaaatattagcccccagtttaaccagatgaaa
taatggccagaagacagctaagaaaataagagtaaagaccacaataccac
ataatttatactagatacctgtatgcaatgatgtgagaataacgaagagg
tgccccatataattttgaaatgtgactataggtaatttcactatgggaaa
ggattggaatgttttgtatttgaaagcaacatgataaagatactaaaaat
tacagatatttgaagatacttaaaatatcttaaatatttttaatacatat
atatcagctatgcttgtaagtatttagaaaatagatttgaagggatcctg
cggacttttattatagaatgttctaatgcagatggaaacacctttgaaat
atgtttagaaaaatattctttagtgacagttaatcaccgtggatgaaata
tactacagactaaggtaagaagatggaaaataatatagaagaaaaactga
attttagacatatagtgaataaagaattggtaaaccttaaggaatgcaat
tttctcaataatggaattagtaaaagggagaatgggcctcagaatggaag
ccaaggacctggaatgacattagtaaactaagaatctctcagagataaaa
gtttagtgataatgaacaggaggtgctacaattgattaaagtaaactcta
gaaaagctccattagacttagcacttcattgggtcaagttgacacatttg
ttggtttatttttttaataatttcatcagttactagagaatttcggactt
catcactcttctctttttagaactcctcccagatctaccttctccacact
catctacctatccacctaaacttgagtttccttttttaaacccattgact
acactttcagggaagggccaccccaaaatgtgtggaacaacaaaattgga
ctccatgttcatgtgttattaataatgagactgtagctcaagtgactttg
tactctagcaatccttttccctgatctaaatgcccaagaattacagaaat
agtgtcaccacaatgggttggacacatggctttcagaaaataccaaggta
acctgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12824565_12825225
seq2: B6Ng01-219K11.b_44_704

seq1  GAATTCTATTTGAATGTCCCCACATCTGCACTTGTACGCACATACAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTGAATGTCCCCACATCTGCACTTGTACGCACATACAAAAT  50

seq1  AAAATATTAAAATGTAATAGGTTTTGAAAGTTAATATTAGTGTATTAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTAAAATGTAATAGGTTTTGAAAGTTAATATTAGTGTATTAACT  100

seq1  ATGAAGACACTGTAGTGTAATAGGGAATGCCTTATATCAGTAGATGCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACACTGTAGTGTAATAGGGAATGCCTTATATCAGTAGATGCTAA  150

seq1  TTTTTCCCACTAAGCAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCACTAAGCAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAACTT  200

seq1  GATGTATCACTTTTTGTATAAACAGTGACATTCAGTGGTGCTGTTAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATCACTTTTTGTATAAACAGTGACATTCAGTGGTGCTGTTAGAAT  250

seq1  TCACTAATTTGTGAATAAGTTAAGGGTTATCAACTGCTTCAGACTTAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAATTTGTGAATAAGTTAAGGGTTATCAACTGCTTCAGACTTAATG  300

seq1  GATTGCAAAGAATTTCAGCAAATGACCCTTGCAGATTCATTAAACTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCAAAGAATTTCAGCAAATGACCCTTGCAGATTCATTAAACTTGAT  350

seq1  CAATCACAGTGTAATTGTCAAGCTAGAATAGCAATTAATTTTCATTAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACAGTGTAATTGTCAAGCTAGAATAGCAATTAATTTTCATTAAGC  400

seq1  TGGAAGGTCATTAGTACAGTTTTAGAAAAAATGACTATTAAGTTGTGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGTCATTAGTACAGTTTTAGAAAAAATGACTATTAAGTTGTGATG  450

seq1  CAAAAGATTTAATAGTTTTTCTATAATTAAAACCCTTTGCTTAATTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGATTTAATAGTTTTTCTATAATTAAAACCCTTTGCTTAATTCTAT  500

seq1  AATTTCATGTGGGGAAGAAATCAACTTTAAAGTACTCAGCTTTTCTACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATGTGGGGAAGAAATCAACTTTAAAGTACTCAGCTTTTCTACAA  550

seq1  ATAAAAAGTAACAACAACTTAGCTTAGGTAAACAGAGTGTGTATGCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGTAACAACAACTTAGCTTAGGTAAACAGAGTGTGTATGCACTT  600

seq1  TCATGTGTGTATGTGTGTATATGCTCATGTGTGTGTGTGTGTGTGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTGTATGTGTGTATATGCTCATGTGTGTGTGTGTGTGTGTGTGT  650

seq1  GTGTGTGTTTG  661
      |||||||||||
seq2  GTGTGTGTTTG  661

seq1: chr5_13010980_13012140
seq2: B6Ng01-219K11.g_69_1226 (reverse)

seq1  AATCAGGT--ACATGGTAATTTCTGAAAAGCCATGTGTCAAAACCATTGT  48
      ||||||||   | ||||| |||||| ||||||||||||| || |||||||
seq2  AATCAGGTTACCTTGGTATTTTCTG-AAAGCCATGTGTCCAACCCATTGT  49

seq1  GGTGACAC-ATATCTGTAA-TCTTGGCTATTAAGATCAGGGAAAAAGGAT  96
      |||||||| || ||||||| ||||||  ||| ||||||||| ||||||||
seq2  GGTGACACTATTTCTGTAATTCTTGGGCATTTAGATCAGGG-AAAAGGAT  98

seq1  TGCTAAGAGTACAAAGTCAACTTGAGCTACAGTCTCAATAATAAATAAAC  146
      |||| ||||||||||||| |||||||||||||||||| || |||   |||
seq2  TGCT-AGAGTACAAAGTC-ACTTGAGCTACAGTCTCATTATTAA--TAAC  144

seq1  ACATGAACATGGAGTCCAAATTTTGTTGTTCCACACATTTTGGGGTGGCC  196
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACATGAACATGGAGTCC-AATTTTGTTGTTCCACACATTTTGGGGTGGCC  193

seq1  CTTCCCTG-AAGTGTAGTCAATGGGTTTTAAAAAAAGGAAACTCAAGTTT  245
      |||||||| |||||||||||||||||||  ||||||||||||||||||||
seq2  CTTCCCTGAAAGTGTAGTCAATGGGTTT--AAAAAAGGAAACTCAAGTTT  241

seq1  AGGTGGATAGGTAGATGAGTGTGGAGAAGGTAGATCTGGGAGGAGTTCTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGATAGGTAGATGAGTGTGGAGAAGGTAGATCTGGGAGGAGTTCTA  291

seq1  AAAAGAGAAGAGTGATGAAGTCCGAAATTCTCTAGTAACTGATGAAATTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAAGAGTGATGAAGTCCGAAATTCTCTAGTAACTGATGAAATTA  341

seq1  TTAAAAAAATAAACCAACAAATGTGTCAACTTGA-CCAATGAAGTGCTAA  394
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTAAAAAAATAAACCAACAAATGTGTCAACTTGACCCAATGAAGTGCTAA  391

seq1  GTCTAATGGAGCTTTTCTAGAGTTTACTTTAATCAATTGTAGCACCTCCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATGGAGCTTTTCTAGAGTTTACTTTAATCAATTGTAGCACCTCCT  441

seq1  GTTCATTATCACTAAACTTTTATCTCTGAGAGATTCTTAGTTTACTAATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTATCACTAAACTTTTATCTCTGAGAGATTCTTAGTTTACTAATG  491

seq1  TCATTCCAGGTCCTTGGCTTCCATTCTGAGGCCCATTCTCCCTTTTACTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCAGGTCCTTGGCTTCCATTCTGAGGCCCATTCTCCCTTTTACTA  541

seq1  ATTCCATTATTGAGAAAATTGCATTCCTTAAGGTTTACCAATTCTTTATT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTATTGAGAAAATTGCATTCCTTAAGGTTTACCAATTCTTTATT  591

seq1  CACTATATGTCTAAAATTCAGTTTTTCTTCTATATTATTTTCCATCTTCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATATGTCTAAAATTCAGTTTTTCTTCTATATTATTTTCCATCTTCT  641

seq1  TACCTTAGTCTGTAGTATATTTCATCCACGGTGATTAACTGTCACTAAAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTAGTCTGTAGTATATTTCATCCACGGTGATTAACTGTCACTAAAG  691

seq1  AATATTTTTCTAAACATATTTCAAAGGTGTTTCCATCTGCATTAGAACAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTCTAAACATATTTCAAAGGTGTTTCCATCTGCATTAGAACAT  741

seq1  TCTATAATAAAAGTCCGCAGGATCCCTTCAAATCTATTTTCTAAATACTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAATAAAAGTCCGCAGGATCCCTTCAAATCTATTTTCTAAATACTT  791

seq1  ACAAGCATAGCTGATATATATGTATTAAAAATATTTAAGATATTTTAAGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCATAGCTGATATATATGTATTAAAAATATTTAAGATATTTTAAGT  841

seq1  ATCTTCAAATATCTGTAATTTTTAGTATCTTTATCATGTTGCTTTCAAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAAATATCTGTAATTTTTAGTATCTTTATCATGTTGCTTTCAAAT  891

seq1  ACAAAACATTCCAATCCTTTCCCATAGTGAAATTACCTATAGTCACATTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACATTCCAATCCTTTCCCATAGTGAAATTACCTATAGTCACATTT  941

seq1  CAAAATTATATGGGGCACCTCTTCGTTATTCTCACATCATTGCATACAGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTATATGGGGCACCTCTTCGTTATTCTCACATCATTGCATACAGG  991

seq1  TATCTAGTATAAATTATGTGGTATTGTGGTCTTTACTCTTATTTTCTTAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGTATAAATTATGTGGTATTGTGGTCTTTACTCTTATTTTCTTAG  1041

seq1  CTGTCTTCTGGCCATTATTTCATCTGGTTAAACTGGGGGCTAATATTTGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCTGGCCATTATTTCATCTGGTTAAACTGGGGGCTAATATTTGT  1091

seq1  TATAGTTCTACACAACTACACAATATCTTTAATGAAGCATGAGTCTCATA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTCTACACAACTACACAATATCTTTAATGAAGCATGAGTCTCATA  1141

seq1  TTTAAAATATGGAATTC  1161
      |||||||||||||||||
seq2  TTTAAAATATGGAATTC  1158