BAC Information

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BAC

Clone NameB6Ng01-220A17
Chromosome5 (Build37)
Map Location 47,038,451 - 47,204,726
singlet/doubletdoublet
Overlap genenone
Upstream gene1600023N17Rik, Lcorl, LOC100041576, EG666103
Downstream geneLOC100040865
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220A17.bB6Ng01-220A17.g
ACCGA035705GA035706
length1,1391,081
definitionB6Ng01-220A17.b B6Ng01-220A17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,038,451 - 47,039,605)(47,203,635 - 47,204,726)
sequence
gaattctctctgtaggtaaacactcaaaaataagaataaataaattgtaa
aaataaagacatgaagttggggaaaatataatgagagggagttctggata
cactacaatagtggagatgagatgtatatatgaccaggaaacattgttca
ggctctagagaagaggctataagattaagagcactggctgttcttccaga
ggattaaggtttagtggctagcacctaattggcaactcaccactgtcttg
taactccagtctctgaggatccaatgttctcttctggtcttcagtatacc
aggcatatatatggtttacatacgtgcatgaggaaaaaaaacctcataca
tacaaaattaattaattaattaattagttagttaatatgcacaagaaaaa
ttcaaatgtaatgtgtatatattacattatatatacacatggaaatttca
aagaataaatgagagaaaaggagatacaggtggcaagcatgcagatagaa
tgttatttggccttaatactaaaaagataatgtaagaaatatctaaagaa
tatatttacatgtagtatccctagaaaaagcattgcataaatgcttgcaa
ctgctttatttttagtttgtatgcacatgccatttacttagtaaaaatat
acactgtcagcagcatgcccaatccatgcaatgggatacctttccacaat
ataaagaaacaaacatttgatatataacatgtgaatgtatcttagagaca
tgtgcgagacaaatgagagtggtatcatactttccagacttggaggttcc
atttatatggcttctcttaagaacatccatagagatttaaggtattctgt
tcattaatgaaagtgtagtagaaaggaatgaccaggtaattaaaatattt
tgtttctggaccatggcagtagttacatcattatgtatgggttcttggat
gattagaacagtatactatatctagatatttattatatgccatcttatat
tatctatcatttatatgatattattattattatatttgagaatagaatct
cctttggagccctagctatcctggaaaagtttatgtacatgaggatgcct
gaaatttccgagattggtggaatctgtctccggaagtct

gaattccagttcatttattgttctgctgagatacttttaatcttaattat
cttcccaggtaaggtgatagaataatgaaaccacatgctggagcaataat
tgttgtatataggaaaggaccatttcattaaaggtttagcaattagtgaa
tgaattaattaatgatagatgacatttcatacttagatatggtaaattcc
cttctaccgactaagcttcttgaaactgtttcatcaatgagcaatgaagg
gaatgagttacagaacagaagaaatagaaatacgtaaagtgttgttaaat
gaattgaaagaaacacgtaagaacaaaaaatgataatctggttaaggcaa
aggatgatgaggatcttaacgaagacaaatgaaaatgtatgtatgaaata
caaagaagacatccaacaggtttgatagttatggcagaatcagactttga
gataatattctctttacaaaccaagaatgatttttcacaagagtctatag
cagtcttccagagagcaaacaccagaaagaaaagaagaagccttctaaat
ggtgaagaatatttgctacacttctccaaggaagaaaacattaaataaag
atcagaaaaatgccactttttaggtcatcattttttaaacttctcaaaac
atattagcatgttaaattgctagcactattctgtaatatgaactgtgtta
agtgtaccattcaaaacatttggccatgcattagtttgtttgcaaaataa
cctattaaaactattgcattagttacttttcaattatgacaaaaagcaaa
acaaaacaaaaccaaacaaacaaacaaacaaaaaaactgatggctggtca
acttatagaaggaagcatttactttgtgtacagttctagaaggatgggat
ctgtcacgatggtgagtagtggaagcaagcagcagacattgagtggtcac
atctggatcttcaagcagaaatagattgatctacaaatggcacagtcttt
aaactctcaaagtctgctgcagtgacacatttcttctacatgcacactct
tgatcctcccatagcatctgccaataggcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_47038451_47039605
seq2: B6Ng01-220A17.b_45_1183

seq1  GAATTCTCTCTGTAGGTAAACACTCAAAAATAAGAATAAATAAATTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGTAGGTAAACACTCAAAAATAAGAATAAATAAATTGTAA  50

seq1  AAATAAAGACATGAAGTTGGGGAAAATATAATGAGAGGGAGTTCTGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGACATGAAGTTGGGGAAAATATAATGAGAGGGAGTTCTGGATA  100

seq1  CACTACAATAGTGGAGATGAGATGTATATATGACCAGGAAACATTGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAATAGTGGAGATGAGATGTATATATGACCAGGAAACATTGTTCA  150

seq1  GGCTCTAGAGAAGAGGCTATAAGATTAAGAGCACTGGCTGTTCTTCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTAGAGAAGAGGCTATAAGATTAAGAGCACTGGCTGTTCTTCCAGA  200

seq1  GGATTAAGGTTTAGTGGCTAGCACCTAATTGGCAACTCACCACTGTCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAGGTTTAGTGGCTAGCACCTAATTGGCAACTCACCACTGTCTTG  250

seq1  TAACTCCAGTCTCTGAGGATCCAATGTTCTCTTCTGGTCTTCAGTATACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCAGTCTCTGAGGATCCAATGTTCTCTTCTGGTCTTCAGTATACC  300

seq1  AGGCATATATATGGTTTACATACGTGCATGAGGAAAAAAAACCTCATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATATATATGGTTTACATACGTGCATGAGGAAAAAAAACCTCATACA  350

seq1  TACAAAATTAATTAATTAATTAATTAGTTAGTTAATATGCACAAGAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATTAATTAATTAATTAATTAGTTAGTTAATATGCACAAGAAAAA  400

seq1  TTCAAATGTAATGTGTATATATTACATTATATATACACATGGAAATTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGTAATGTGTATATATTACATTATATATACACATGGAAATTTCA  450

seq1  AAGAATAAATGAGAGAAAAGGAGATACAGGTGGCAAGCATGCAGATAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAATGAGAGAAAAGGAGATACAGGTGGCAAGCATGCAGATAGAA  500

seq1  TGTTATTTGGCCTTAATACTAAAAAGATAATGTAAGAAATATCTAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTGGCCTTAATACTAAAAAGATAATGTAAGAAATATCTAAAGAA  550

seq1  TATATTTACATGTAGTATCCCTAGAAAAAGCATTGCATAAATGCTTGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTACATGTAGTATCCCTAGAAAAAGCATTGCATAAATGCTTGCAA  600

seq1  CTGCTTTATTTTTAGTTTGTATGCACATGCCATTTACTTAGTAAAAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTATTTTTAGTTTGTATGCACATGCCATTTACTTAGTAAAAATAT  650

seq1  ACACTGTCAGCAGCATGCCCAATCCATGCAATGGGATACCTTTCCACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCAGCAGCATGCCCAATCCATGCAATGGGATACCTTTCCACAAT  700

seq1  ATAAAGAAACAAACATTTGATATATAACATGTGAATGTATCTTAGAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAACAAACATTTGATATATAACATGTGAATGTATCTTAGAGACA  750

seq1  TGTGCGAGACAAATGAGAGTGGTATCATACTTTCCAGACTTGGAGGTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGAGACAAATGAGAGTGGTATCATACTTTCCAGACTTGGAGGTTCC  800

seq1  ATTTATATGGCTTCTCTTAAGAACATCCATAGAGATTTAAGGTATTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATGGCTTCTCTTAAGAACATCCATAGAGATTTAAGGTATTCTGT  850

seq1  TCATTAATGAAAGTGTAGTAGAAAGGAATGACCAGGGTAATTAAAATATT  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCATTAATGAAAGTGTAGTAGAAAGGAATGACCA-GGTAATTAAAATATT  899

seq1  TTGTTTCTGGACCATGGCAGTAGTTACATCATTATGTAT-GGTTCTTGGA  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  TTGTTTCTGGACCATGGCAGTAGTTACATCATTATGTATGGGTTCTTGG-  948

seq1  ATGATTAGAACAGTATACTATATCTTAAGATAATTTTATTATATGCCATC  999
      |||||||||||||||||||||||||  |||||  ||||||||||||||||
seq2  ATGATTAGAACAGTATACTATATCT--AGATA--TTTATTATATGCCATC  994

seq1  TTAATATTATTCTATTCATTTATATGATTAATTTATTATTTATTATATTT  1049
      || |||||| |||| |||||||||||||    |||||| |||||||| ||
seq2  TT-ATATTA-TCTA-TCATTTATATGAT---ATTATTA-TTATTATA-TT  1036

seq1  TGAG-ATAGAATCTCCCTATGGAGCCCTAGCTATCCTGGAAATAGTTATG  1098
      |||| ||||||||| ||| |||||||||||||||||||||||   |||||
seq2  TGAGAATAGAATCT-CCTTTGGAGCCCTAGCTATCCTGGAAAAGTTTATG  1085

seq1  TACATGAGGATGGCCTGAAATTTACAGAGATTTGTGTGATTCTGTCTCCA  1148
      ||||||||||| ||||||||||| | |||||| ||| || ||||||||| 
seq2  TACATGAGGAT-GCCTGAAATTT-CCGAGATTGGTG-GAATCTGTCTCCG  1132

seq1  GAAGTCT  1155
      |||||||
seq2  GAAGTCT  1139


seq1: chr5_47203635_47204726
seq2: B6Ng01-220A17.g_67_1147 (reverse)

seq1  GTGCCTATTTGCAGATGCTATTGGGGGAGGATCAGGAGTTGTGGCATTGT  50
      ||||||||| |||||||||||   |||||||||| ||| ||| ||||   
seq2  GTGCCTATTGGCAGATGCTAT---GGGAGGATCAAGAG-TGT-GCAT--G  43

seq1  TAGAAGAAATGTGTCACTGCAGGCAGACTTTGAGAGTTTAAAGACTTGTG  100
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  TAGAAGAAATGTGTCACTGCA-GCAGACTTTGAGAGTTTAAAGAC-TGTG  91

seq1  CCATTTGTAGATCAATCTATTTCCTGCTTTGAGGTTCCAGATGTGACCAC  150
      |||||||||||||||||||||| |||| |||| | |||||||||||||||
seq2  CCATTTGTAGATCAATCTATTT-CTGC-TTGAAGATCCAGATGTGACCAC  139

seq1  TCAATGTCTGCTGCTTGCTTCCACTACTCACCATCGTGACAGATCCCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTCTGCTGCTTGCTTCCACTACTCACCATCGTGACAGATCCCATC  189

seq1  CTTCTAGAACTGTACACAAAGTAAATGCTTCCTTCTATAAGTTGACCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGAACTGTACACAAAGTAAATGCTTCCTTCTATAAGTTGACCAGC  239

seq1  CATCAGTTTTTTTGTTTGTTTGTTTGTTTGGTTTTGTTTTGTTTTGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTTTTTTTGTTTGTTTGTTTGTTTGGTTTTGTTTTGTTTTGCTTT  289

seq1  TTGTCATAATTGAAAAGTAACTAATGCAATAGTTTTAATAGGTTATTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATAATTGAAAAGTAACTAATGCAATAGTTTTAATAGGTTATTTTG  339

seq1  CAAACAAACTAATGCATGGCCAAATGTTTTGAATGGTACACTTAACACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACTAATGCATGGCCAAATGTTTTGAATGGTACACTTAACACAG  389

seq1  TTCATATTACAGAATAGTGCTAGCAATTTAACATGCTAATATGTTTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTACAGAATAGTGCTAGCAATTTAACATGCTAATATGTTTTGAG  439

seq1  AAGTTTAAAAAATGATGACCTAAAAAGTGGCATTTTTCTGATCTTTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAAAAAATGATGACCTAAAAAGTGGCATTTTTCTGATCTTTATTT  489

seq1  AATGTTTTCTTCCTTGGAGAAGTGTAGCAAATATTCTTCACCATTTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTCTTCCTTGGAGAAGTGTAGCAAATATTCTTCACCATTTAGAA  539

seq1  GGCTTCTTCTTTTCTTTCTGGTGTTTGCTCTCTGGAAGACTGCTATAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTCTTTTCTTTCTGGTGTTTGCTCTCTGGAAGACTGCTATAGAC  589

seq1  TCTTGTGAAAAATCATTCTTGGTTTGTAAAGAGAATATTATCTCAAAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGAAAAATCATTCTTGGTTTGTAAAGAGAATATTATCTCAAAGTC  639

seq1  TGATTCTGCCATAACTATCAAACCTGTTGGATGTCTTCTTTGTATTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGCCATAACTATCAAACCTGTTGGATGTCTTCTTTGTATTTCAT  689

seq1  ACATACATTTTCATTTGTCTTCGTTAAGATCCTCATCATCCTTTGCCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATTTTCATTTGTCTTCGTTAAGATCCTCATCATCCTTTGCCTTA  739

seq1  ACCAGATTATCATTTTTTGTTCTTACGTGTTTCTTTCAATTCATTTAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATTATCATTTTTTGTTCTTACGTGTTTCTTTCAATTCATTTAACA  789

seq1  ACACTTTACGTATTTCTATTTCTTCTGTTCTGTAACTCATTCCCTTCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTACGTATTTCTATTTCTTCTGTTCTGTAACTCATTCCCTTCATT  839

seq1  GCTCATTGATGAAACAGTTTCAAGAAGCTTAGTCGGTAGAAGGGAATTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTGATGAAACAGTTTCAAGAAGCTTAGTCGGTAGAAGGGAATTTA  889

seq1  CCATATCTAAGTATGAAATGTCATCTATCATTAATTAATTCATTCACTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCTAAGTATGAAATGTCATCTATCATTAATTAATTCATTCACTAA  939

seq1  TTGCTAAACCTTTAATGAAATGGTCCTTTCCTATATACAACAATTATTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAACCTTTAATGAAATGGTCCTTTCCTATATACAACAATTATTGC  989

seq1  TCCAGCATGTGGTTTCATTATTCTATCACCTTACCTGGGAAGATAATTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCATGTGGTTTCATTATTCTATCACCTTACCTGGGAAGATAATTAA  1039

seq1  GATTAAAAGTATCTCAGCAGAACAATAAATGAACTGGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAAGTATCTCAGCAGAACAATAAATGAACTGGAATTC  1081


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