BAC Information

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BAC

Clone NameB6Ng01-220C08
Chromosome5 (Build37)
Map Location 126,545,255 - 126,546,457
singlet/doubletsinglet
Overlap genenone
Upstream geneNcor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178, LOC665760
Downstream geneLOC100040327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220C08.bB6Ng01-220C08.g
ACCGA035780GA035781
length1,1841,190
definitionB6Ng01-220C08.b B6Ng01-220C08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccctcatgtctgcattggaagagtaccaagggtctagaaatttcc
atggcattccccctgaaaattaccagatttcatttctcttgtatctggtt
ggatagagcaagctcagggaagatagcgaaaagacaaataaaagaatgcg
gtttgtgttacatcttatgcatggtgcattcgttgaaaacaaaaggtcct
gcattccgtttgaaggagaaagataaagcttgcttagaaaccaaatggaa
agggaaaagaacacacctaaatcatgctaattcatccttcccgtgttaag
tgatcctgggaccaaacacaagtaatttagagccttgttccagaaaatgc
ctgctcctgagagattagccagagaactaactaaacagcttgcttatcac
taccaacagcttgttcagtgagactcacggcaaggcctctccttgctttg
tctgccaacttgaagcaattaggcaaagtcacaggctcctctcaatactc
cttgggagccatgatctcctcatgcctggttctcaggaagtcccaagatg
gagttagcaccaaccttctttcctctcaaaaccttccaaatggctcgtca
tgaagaaacttagaacaaaggtttcctttaagtataagcggagttggagc
cagtgctgttggctggagggtttcctacaacgtgggaagtgtcaacaaaa
cattctctcttttctatcaaagggttaaataagacaaattccattaaaaa
aaatcccaattaagccactcggcagaaatttaaacttaatttttttttaa
tttaaatcaaaatacatgctcaaggttgcaccttgtcgaagatggcagct
tggttatcagtgtcactctcttgagctacctactcctttcagaatgtgag
acaatctctgaccagtcagggtgaggaatagacaccctggtgttctgaaa
gaaaatctctcaaacttcccataactctgtccactgatgcagaactacat
tctttaccttgagaaaatacccttgggctgtgtcgtcatcttcttgactc
cttccaacctatctacatgaagcagctgattctacaaccaaattaagtcc
aacacatatatcgtgctagtagaaaatgctattctagtcaggcaggatca
aggaatcattcacctgtatcccatgccttgataa

gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaataatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccagaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtattactcagctattaaaaacaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagttagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccaaggagctaaaggatctgcaacccta
taggtgaacacattatgaaactaaccagttaccccggagcctcttgactc
tagctgcatatatatcataaggattgtcctagtcgcatcactgcaaagat
agttccaattgaacttgccaaactttattgccagtacaggatccccatgg
cataaaatggggaacgtggggtggtccagacgtgacgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_126545255_126546457
seq2: B6Ng01-220C08.b_43_1226

seq1  GAATTCCCTCATGTCTGCATTGGAAGAGTACCAAGGGTCTAGAAATTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCATGTCTGCATTGGAAGAGTACCAAGGGTCTAGAAATTTCC  50

seq1  ATGGCATTCCCCCTGAAAATTACCAGATTTCATTTCTCTTGTATCTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATTCCCCCTGAAAATTACCAGATTTCATTTCTCTTGTATCTGGTT  100

seq1  GGATAGAGCAAGCTCAGGGAAGATAGCGAAAAGACAAATAAAAGAATGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAGCAAGCTCAGGGAAGATAGCGAAAAGACAAATAAAAGAATGCG  150

seq1  GTTTGTGTTACATCTTATGCATGGTGCATTCGTTGAAAACAAAAGGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTTACATCTTATGCATGGTGCATTCGTTGAAAACAAAAGGTCCT  200

seq1  GCATTCCGTTTGAAGGAGAAAGATAAAGCTTGCTTAGAAACCAAATGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCGTTTGAAGGAGAAAGATAAAGCTTGCTTAGAAACCAAATGGAA  250

seq1  AGGGAAAAGAACACACCTAAATCATGCTAATTCATCCTTCCCGTGTTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAGAACACACCTAAATCATGCTAATTCATCCTTCCCGTGTTAAG  300

seq1  TGATCCTGGGACCAAACACAAGTAATTTAGAGCCTTGTTCCAGAAAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTGGGACCAAACACAAGTAATTTAGAGCCTTGTTCCAGAAAATGC  350

seq1  CTGCTCCTGAGAGATTAGCCAGAGAACTAACTAAACAGCTTGCTTATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCTGAGAGATTAGCCAGAGAACTAACTAAACAGCTTGCTTATCAC  400

seq1  TACCAACAGCTTGTTCAGTGAGACTCACGGCAAGGCCTCTCCTTGCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACAGCTTGTTCAGTGAGACTCACGGCAAGGCCTCTCCTTGCTTTG  450

seq1  TCTGCCAACTTGAAGCAATTAGGCAAAGTCACAGGCTCCTCTCAATACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAACTTGAAGCAATTAGGCAAAGTCACAGGCTCCTCTCAATACTC  500

seq1  CTTGGGAGCCATGATCTCCTCATGCCTGGTTCTCAGGAAGTCCCAAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGCCATGATCTCCTCATGCCTGGTTCTCAGGAAGTCCCAAGATG  550

seq1  GAGTTAGCACCAACCTTCTTTCCTCTCAAAACCTTCCAAATGGCTCGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGCACCAACCTTCTTTCCTCTCAAAACCTTCCAAATGGCTCGTCA  600

seq1  TGAAGAAACTTAGAACAAAGGTTTCCTTTAAGTATAAGCGGAGTTGGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAACTTAGAACAAAGGTTTCCTTTAAGTATAAGCGGAGTTGGAGC  650

seq1  CAGTGCTGTTGGCTGGAGGGTTTCCTACAACGTGGGAAGTGTCAACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGTTGGCTGGAGGGTTTCCTACAACGTGGGAAGTGTCAACAAAA  700

seq1  CATTCTCTCTTTTCTATCAAAGGGTTAAATAAGACAAATTCCATTAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTCTTTTCTATCAAAGGGTTAAATAAGACAAATTCCATTAAAAA  750

seq1  AAATCCCAATTAAGCCACTCGGCAGAAATTTAAACTTAA-TTTTTTTTAA  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAATCCCAATTAAGCCACTCGGCAGAAATTTAAACTTAATTTTTTTTTAA  800

seq1  TTTAAATCAAAATACATGCTCAAGGTTGCACCTTGTCGAAGATGGCAGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCAAAATACATGCTCAAGGTTGCACCTTGTCGAAGATGGCAGCT  850

seq1  TGGTTATCAGTGTCACTCTCTTGAGCTACCTACTCCTTTCAGAATGTGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATCAGTGTCACTCTCTTGAGCTACCTACTCCTTTCAGAATGTGAG  900

seq1  ACAATCTCTGACCAGTCAGGGTGAGGAATAGACACCCTGGTGTTCTGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTCTGACCAGTCAGGGTGAGGAATAGACACCCTGGTGTTCTGAAA  950

seq1  GAAAATCTCTCAAAACTCCCATAACTCTGTCCACTGATGCAGAACTACAT  999
      ||||||||||||||  ||||||||||||||||||||||||||||||||| 
seq2  GAAAATCTCTCAAACTTCCCATAACTCTGTCCACTGATGCAGAACTACA-  999

seq1  TTCTTTACCTTGAGAAAATA-CCTTGGGCTGTGTCGTCATCTTCTTGACT  1048
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCTTTACCTTGAGAAAATACCCTTGGGCTGTGTCGTCATCTTCTTGACT  1049

seq1  CCTTCCAACCCTAATTCTAACATGAAAGCAGCTGAATTCCTAACAAACCC  1098
      |||||||| ||||  ||| ||||| ||||||||| ||||   ||||  ||
seq2  CCTTCCAA-CCTA--TCT-ACATG-AAGCAGCTG-ATTC--TACAA--CC  1089

seq1  AAAATTAAAGTTCAACACATATATTCGTGGCTTAGTAGAAAAATGCTATA  1148
      |||  | |||| ||||||||||| |||||   |||||| |||||||||| 
seq2  AAA--TTAAGTCCAACACATATA-TCGTG--CTAGTAG-AAAATGCTAT-  1132

seq1  TCTAGTCAAGGCAGGGATCAAAAGAAATCCATTCACCTGTA--CCATGCT  1196
      ||||||| ||||| |||||  ||| ||| ||||||||||||  |||||| 
seq2  TCTAGTC-AGGCA-GGATC--AAGGAAT-CATTCACCTGTATCCCATGCC  1177

seq1  TTGATAA  1203
      |||||||
seq2  TTGATAA  1184


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