BAC Information

Click to search

BAC

Clone NameB6Ng01-220M11
Chromosome5 (Build37)
Map Location 137,214,746 - 137,287,072
singlet/doubletdoublet
Overlap geneEmid2
Upstream gene2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl
Downstream geneLOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220M11.bB6Ng01-220M11.g
ACCGA036252GA036253
length9151,117
definitionB6Ng01-220M11.b B6Ng01-220M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,286,158 - 137,287,072)(137,214,746 - 137,215,851)
sequence
gaattcctgtctgcaaaagcctcacagttgttttcgattagcgtacaagt
cgacatgcgcgtagaacatctgctgttaatccaggtcccggtggaaggga
gatgccaacacgtcgtttattaggcacgtccatcccataatgtcctcgct
ctgcctttgtcttccatggaggaggccgtaagggttccagagtgtctttt
atttggctgcagaccatgtttcctcccgcctaacgggatcaggacggaat
ggattccaggttgttaatgtatgctattttggaaccggactctgccgcta
ttcattctgaagtctctgggcaaatatccaactcatgtttgcccctggtc
atcaaggcggcatcagaaacctgggtccagtcctctggggaagggcaggg
ggcaccggaggagtgggaggaaagaaactcatatccacagctcctgattt
taagggaattctgggcagacaccggtagatgggcggggcgggaggcggtg
ttagatgatggacaaaggagtctttggagtcccggttctgggcaaggagg
aggtgaagtggaacaccacttccagagccactggaagggctgcagagaag
gctcagtgggtaaagtcctggccgcagaagtgtggggccggggtttgagt
ccccttggcggaacatatctgcagctctgccattggggaaggcagagagg
ctaactgatcccagaggctcagcagtggaccagcccatctagctggatcg
gccatctccaggctcagacagggttgctctctcaaagaaataaagtgaag
agtgattcaagggagagccaaaatcaacctctggcctccaaacagacacg
cgcccccccccacacacacacgagagagagagagagagagagagagagag
agagagagagagaga
gaattcaattaattgaaaaatctcgtgaaattctccataaagcaggtctg
tgagagactgggcttggaagtgcaggtgctggctctcctcggggcgggag
gggtttgtgttccaactggggcggctttgggaaggctttatccctctctt
ggcccggctccttctcacgatgccttaaggggtctggacaggaggtgatt
tcattgcccaggtcctgtcaggtagggggtcagtgatctgacacagtggc
tcactgtgttgcacccagctagcctgggaacttaggatggccacatgttc
ctgcacctggacatccacaattgagcatggaagggtgagctatggggtga
gttttgggtcgagtgagtcatgggcttggctgggggaccctggctttacc
tttattaattacccttgctgggactcagtgctgcctgtttccaccctata
cctcatggtttggggggaaggccgagaaggaaggacataggtgggaccaa
ctcgggatcgcagtcctgagcgtttgccgtggctggaggctgtggaaggg
caagtagggtttccggttgtggaaaaagcagccacgatgctgtgttcagg
ccataaggctgggcctctctcccgaacccccttgctggagcacccttgag
cttcacagcgtgcgcatgcgcatgcgcatacacatgcaggggctcgagga
aacttgaggaggggaggaaaaacataggtttccttatctcttgctctgag
caaggaacacagcagtctcccatgactagacattgcttgttgagaccaga
acattcctgagctttcctgctccctgtcaatgttcagcctccaaactcat
ccgtcctcagtctcccagcactgagtgatcctgagtgatcctgggcaagc
tgggtccaggaccgtgcgggtagagtagaaacactcacttatcgggtctg
gaacagggcttatagccatcgttccggaacaggcagccgaaaatttccaa
ctggtgtgtctcttgggtctctctcttcatcattagctcttgggttccgg
actctgtagcttcaagccctctgctttctccatcactggatatttggtat
agccatctttcctttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_137286158_137287072
seq2: B6Ng01-220M11.b_50_964 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTGTGT  50

seq1  GTGTGGGGGGGGGCGCGTGTCTGTTTGGAGGCCAGAGGTTGATTTTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGGGGGGGCGCGTGTCTGTTTGGAGGCCAGAGGTTGATTTTGGCT  100

seq1  CTCCCTTGAATCACTCTTCACCTTATTTCTTTGAGAGAGCAACCCTGTCT  150
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTCCCTTGAATCACTCTTCACTTTATTTCTTTGAGAGAGCAACCCTGTCT  150

seq1  GAGCCTGGAGATGGCCGATCCAGCTAGATGGGCTGGTCCACTGCTGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGAGATGGCCGATCCAGCTAGATGGGCTGGTCCACTGCTGAGCC  200

seq1  TCTGGGATCAGTTAGCCTCTCTGCCTTCCCCAATGGCAGAGCTGCAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGATCAGTTAGCCTCTCTGCCTTCCCCAATGGCAGAGCTGCAGATA  250

seq1  TGTTCCGCCAAGGGGACTCAAACCCCGGCCCCACACTTCTGCGGCCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCGCCAAGGGGACTCAAACCCCGGCCCCACACTTCTGCGGCCAGGA  300

seq1  CTTTACCCACTGAGCCTTCTCTGCAGCCCTTCCAGTGGCTCTGGAAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCCACTGAGCCTTCTCTGCAGCCCTTCCAGTGGCTCTGGAAGTGG  350

seq1  TGTTCCACTTCACCTCCTCCTTGCCCAGAACCGGGACTCCAAAGACTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCACTTCACCTCCTCCTTGCCCAGAACCGGGACTCCAAAGACTCCT  400

seq1  TTGTCCATCATCTAACACCGCCTCCCGCCCCGCCCATCTACCGGTGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCATCATCTAACACCGCCTCCCGCCCCGCCCATCTACCGGTGTCTG  450

seq1  CCCAGAATTCCCTTAAAATCAGGAGCTGTGGATATGAGTTTCTTTCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAATTCCCTTAAAATCAGGAGCTGTGGATATGAGTTTCTTTCCTCC  500

seq1  CACTCCTCCGGTGCCCCCTGCCCTTCCCCAGAGGACTGGACCCAGGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTCCGGTGCCCCCTGCCCTTCCCCAGAGGACTGGACCCAGGTTTC  550

seq1  TGATGCCGCCTTGATGACCAGGGGCAAACATGAGTTGGATATTTGCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCGCCTTGATGACCAGGGGCAAACATGAGTTGGATATTTGCCCAG  600

seq1  AGACTTCAGAATGAATAGCGGCAGAGTCCGGTTCCAAAATAGCATACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCAGAATGAATAGCGGCAGAGTCCGGTTCCAAAATAGCATACATT  650

seq1  AACAACCTGGAATCCATTCCGTCCTGATCCCGTTAGGCGGGAGGAAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCTGGAATCCATTCCGTCCTGATCCCGTTAGGCGGGAGGAAACAT  700

seq1  GGTCTGCAGCCAAATAAAAGACACTCTGGAACCCTTACGGCCTCCTCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCAGCCAAATAAAAGACACTCTGGAACCCTTACGGCCTCCTCCAT  750

seq1  GGAAGACAAAGGCAGAGCGAGGACATTATGGGATGGACGTGCCTAATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACAAAGGCAGAGCGAGGACATTATGGGATGGACGTGCCTAATAAA  800

seq1  CGACGTGTTGGCATCTCCCTTCCACCGGGACCTGGATTAACAGCAGATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACGTGTTGGCATCTCCCTTCCACCGGGACCTGGATTAACAGCAGATGT  850

seq1  TCTACGCGCATGTCGACTTGTACGCTAATCGAAAACAACTGTGAGGCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGCGCATGTCGACTTGTACGCTAATCGAAAACAACTGTGAGGCTTT  900

seq1  TGCAGACAGGAATTC  915
      |||||||||||||||
seq2  TGCAGACAGGAATTC  915

seq1: chr5_137214746_137215851
seq2: B6Ng01-220M11.g_69_1185

seq1  GAATTCAATTAATTGAAAAATCTCGTGAAATTCTCCATAAAGCAGGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAATTGAAAAATCTCGTGAAATTCTCCATAAAGCAGGTCTG  50

seq1  TGAGAGACTGGGCTTGGAAGTGCAGGTGCTGGCTCTCCTCGGGGCGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGACTGGGCTTGGAAGTGCAGGTGCTGGCTCTCCTCGGGGCGGGAG  100

seq1  GGGTTTGTGTTCCAACTGGGGCGGCTTTGGGAAGGCTTTATCCCTCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGTGTTCCAACTGGGGCGGCTTTGGGAAGGCTTTATCCCTCTCTT  150

seq1  GGCCCGGCTCCTTCTCACGATGCCTTAAGGGGTCTGGACAGGAGGTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCGGCTCCTTCTCACGATGCCTTAAGGGGTCTGGACAGGAGGTGATT  200

seq1  TCATTGCCCAGGTCCTGTCAGGTAGGGGGTCAGTGATCTGACACAGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCCCAGGTCCTGTCAGGTAGGGGGTCAGTGATCTGACACAGTGGC  250

seq1  TCACTGTGTTGCACCCAGCTAGCCTGGGAACTTAGGATGGCCACATGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGTTGCACCCAGCTAGCCTGGGAACTTAGGATGGCCACATGTTC  300

seq1  CTGCACCTGGACATCCACAATTGAGCATGGAAGGGTGAGCTATGGGGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCTGGACATCCACAATTGAGCATGGAAGGGTGAGCTATGGGGTGA  350

seq1  GTTTTGGGTCGAGTGAGTCATGGGCTTGGCTGGGGGACCCTGGCTTTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGGTCGAGTGAGTCATGGGCTTGGCTGGGGGACCCTGGCTTTACC  400

seq1  TTTATTAATTACCCTTGCTGGGACTCAGTGCTGCCTGTTTCCACCCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAATTACCCTTGCTGGGACTCAGTGCTGCCTGTTTCCACCCTATA  450

seq1  CCTCATGGTTTGGGGGGAAGGCCGAGAAGGAAGGACATAGGTGGGACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGGTTTGGGGGGAAGGCCGAGAAGGAAGGACATAGGTGGGACCAA  500

seq1  CTCGGGATCGCAGTCCTGAGCGTTTGCCGTGGCTGGAGGCTGTGGAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGATCGCAGTCCTGAGCGTTTGCCGTGGCTGGAGGCTGTGGAAGGG  550

seq1  CAAGTAGGGTTTCCGGTTGTGGAAAAAGCAGCCACGATGCTGTGTTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGGGTTTCCGGTTGTGGAAAAAGCAGCCACGATGCTGTGTTCAGG  600

seq1  CCATAAGGCTGGGCCTCTCTCCCGAACCCCCTTGCTGGAGCACCCTTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGGCTGGGCCTCTCTCCCGAACCCCCTTGCTGGAGCACCCTTGAG  650

seq1  CTTCACAGCGTGCGCATGCGCATGCGCATACACATGCAGGGGCTCGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAGCGTGCGCATGCGCATGCGCATACACATGCAGGGGCTCGAGGA  700

seq1  AACTTGAGGAGGGGAGGAAAAACATAGGTTTCCTTATCTCTTGCTCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAGGAGGGGAGGAAAAACATAGGTTTCCTTATCTCTTGCTCTGAG  750

seq1  CAAGGAACACAGCAGTCTCCCATGACTAGACATTGCTTGTTGAGACCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACACAGCAGTCTCCCATGACTAGACATTGCTTGTTGAGACCAGA  800

seq1  ACATTCCTGAGC-TTCCTGCTCCCTGTCAATGTTCAG-CTCCAAACTCAT  848
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  ACATTCCTGAGCTTTCCTGCTCCCTGTCAATGTTCAGCCTCCAAACTCAT  850

seq1  CCGTCCTCAGTCTCCCAGCACTGAGTGATCCTGAGTGATCCTGGGCCAGC  898
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCGTCCTCAGTCTCCCAGCACTGAGTGATCCTGAGTGATCCTGGGCAAGC  900

seq1  TGGGTCCAGGACCGTGCGGGTAGAGTAGAAACACTCACCTATCGGGTCTG  948
      |||||||||||||||||||||||||||||||||||||| |||||||||| 
seq2  TGGGTCCAGGACCGTGCGGGTAGAGTAGAAACACTCACTTATCGGGTCT-  949

seq1  GGAACA-GGCCTATAGCCATCGTTCCGGAACAGGCAGGCG-AAATTTCCA  996
      |||||| ||| |||||||||||||||||||||||||| || |||||||||
seq2  GGAACAGGGCTTATAGCCATCGTTCCGGAACAGGCAGCCGAAAATTTCCA  999

seq1  ACT-GTGTGTCTCTT-GGTCTCTCTC-TCATCTTTAGCTCTT-GGTTCCG  1042
      ||| ||||||||||| |||||||||| ||||| ||||||||| |||||||
seq2  ACTGGTGTGTCTCTTGGGTCTCTCTCTTCATCATTAGCTCTTGGGTTCCG  1049

seq1  GACTCTGTAGC-TCAGAGCCTCTGCTTTCTCCATCACCTGGATATTTG--  1089
      ||||||||||| |||   |||||||||||||||||| |||||||||||  
seq2  GACTCTGTAGCTTCAAGCCCTCTGCTTTCTCCATCA-CTGGATATTTGGT  1098

seq1  ATAGCCATCTT--CTTTAT  1106
      |||||||||||  ||||||
seq2  ATAGCCATCTTTCCTTTAT  1117