BAC Information

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BAC

Clone NameB6Ng01-221L05
Chromosome5 (Build37)
Map Location 117,562,230 - 117,698,522
singlet/doubletdoublet
Overlap geneSuds3, Taok3
Upstream geneCcdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684, LOC665073
Downstream genePebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2, Nos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221L05.bB6Ng01-221L05.g
ACCGA036922GA036923
length876892
definitionB6Ng01-221L05.b B6Ng01-221L05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,697,650 - 117,698,522)(117,562,230 - 117,563,119)
sequence
gaattccctctttaatgagattcccagaggggagcagggcttgctttaat
gccatcatgatggatctgaacgctgcgcacgctcaggcctacagctgata
cgatgctcttaggtgactaccacatggcaggaagcccagagatagaccag
gaggaggactgggcatttcctgtagtacccgggggtgcatccctgcaaac
agggtggtcctgctgcctgttttatcgcacctggctcaaatgtgtgacaa
aggcaactgacagagtccagcaagctctccttggatctggttgacttcca
ggagggcagctttgctttctaacacccctcacccccatggttaggggagt
cactttctcagactccaaattaaccttccatttgccaccaccaaactctc
ttgagttttaggttgtcttcctgggcacatacagagttgttttttttttt
tttttttttttttttggatacagggttttggtctatagtttggggtggct
tctgactcccatgtgagccaccgacagatcagaaagttttatcttcctga
gttcaaaggagacagatgagctaaaaaccaaagtcagagcagtgggctca
ctgtgacatttaacgtgaaatatattgaacgtttgtaagttacattatga
attcttatttcactttcacaccatttgtccgaagaatacactgtctggtc
catagaacttcaaacagctaatactttcatatactttataatttagctct
taaatttgtgtccgcatgtgggggatgtacttgttcatgtggggtgtgtg
catgtgtttgggtgtgcacctgctctgctccgtgtagggacagaatggac
cgggggctggcacttgggtgtctctc
gaattcaagagagttcaaggctaggctcatctagggaacaaattctgtga
tagccaggactacacagtgaaaccctgtctcaaaaaaaatgagtaaataa
aaataataaggccaggcgtggggacaacaccatcaatccctgcattctgt
gaactgaaggttagtccggtctcaaaacaacgctctcacccctctcagaa
aacagtcagagctttagctgactgtggctttcgtgaagatgtgtgagaac
aaacagaatgtggcaggaaagggggtggcagcctgctccctcaattccca
ggacacttgggacacccagcatatgacccacaatataggacaggggctgg
gggcctgcaagatacccattgtcctgggtaccagttttcacagcaattct
aacggccttactgccccagcccaccatgcccatcacggctcctgctagtc
tagcctccgaagaggctcctaacaggaaggctcctagatgcaaccagaga
gggaaactacagaaacatctgtgctttgcaagcactgaggtcaaaagggg
gcctctgtattccagagaaaaggcacccgggctactcactgttccttcat
ctccacgtagtcttcctcatcgtgcttcgccaggtcagtctcgctggcat
cctcggtgtctgggcgaaacaaggggagaagcgggcagttatgatcaggt
tcacagaatccgcatcatgacagcgtaatcggcagacttctgggagaaga
aggagtttctatcccatgtgggtctgcatgaacctgctaataaaaagtgt
gtgagtgtgtgtgtgtgtgtgtgtttaaaataaaaaagagaaaatgccac
tccaatcttgggtttatgctgagaatgtactttaatatgacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_117697650_117698522
seq2: B6Ng01-221L05.b_42_917 (reverse)

seq1  GAGAGACACCC-AGTGCCAGCCCCC-GTCCCTTCTGTCCCTACACGGGAG  48
      ||||||||||| ||||||||||||| |||| |||||||||||||| ||||
seq2  GAGAGACACCCAAGTGCCAGCCCCCGGTCCATTCTGTCCCTACAC-GGAG  49

seq1  CAG-GCAGGTGCACACCCAAACACATGCACACA-CCCACATGAACAAGTA  96
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGAGCAGGTGCACACCCAAACACATGCACACACCCCACATGAACAAGTA  99

seq1  CATCCCCCACATGCGGACACAAATTTAAGAGCTAAATTATAAAGTATATG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCCACATGCGGACACAAATTTAAGAGCTAAATTATAAAGTATATG  149

seq1  AAAGTATTAGCTGTTTGAAGTTCTATGGACCAGACAGTGTATTCTTCGGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTAGCTGTTTGAAGTTCTATGGACCAGACAGTGTATTCTTCGGA  199

seq1  CAAATGGTGTGAAAGTGAAATAAGAATTCATAATGTAACTTACAAACGTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGTGTGAAAGTGAAATAAGAATTCATAATGTAACTTACAAACGTT  249

seq1  CAATATATTTCACGTTAAATGTCACAGTGAGCCCACTGCTCTGACTTTGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATATTTCACGTTAAATGTCACAGTGAGCCCACTGCTCTGACTTTGG  299

seq1  TTTTTAGCTCATCTGTCTCCTTTGAACTCAGGAAGATAAAACTTTCTGAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGCTCATCTGTCTCCTTTGAACTCAGGAAGATAAAACTTTCTGAT  349

seq1  CTGTCGGTGGCTCACATGGGAGTCAGAAGCCACCCCAAACTATAGACCAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGGTGGCTCACATGGGAGTCAGAAGCCACCCCAAACTATAGACCAA  399

seq1  AACCCTGTATCCAAAAAAAAAAAAAAAAAAAAAAAAAACAACTCTGTATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTATCCAAAAAAAAAAAAAAAAAAAAAAAAAACAACTCTGTATG  449

seq1  TGCCCAGGAAGACAACCTAAAACTCAAGAGAGTTTGGTGGTGGCAAATGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGGAAGACAACCTAAAACTCAAGAGAGTTTGGTGGTGGCAAATGG  499

seq1  AAGGTTAATTTGGAGTCTGAGAAAGTGACTCCCCTAACCATGGGGGTGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAATTTGGAGTCTGAGAAAGTGACTCCCCTAACCATGGGGGTGAG  549

seq1  GGGTGTTAGAAAGCAAAGCTGCCCTCCTGGAAGTCAACCAGATCCAAGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTAGAAAGCAAAGCTGCCCTCCTGGAAGTCAACCAGATCCAAGGA  599

seq1  GAGCTTGCTGGACTCTGTCAGTTGCCTTTGTCACACATTTGAGCCAGGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGCTGGACTCTGTCAGTTGCCTTTGTCACACATTTGAGCCAGGTG  649

seq1  CGATAAAACAGGCAGCAGGACCACCCTGTTTGCAGGGATGCACCCCCGGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAAAACAGGCAGCAGGACCACCCTGTTTGCAGGGATGCACCCCCGGG  699

seq1  TACTACAGGAAATGCCCAGTCCTCCTCCTGGTCTATCTCTGGGCTTCCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACAGGAAATGCCCAGTCCTCCTCCTGGTCTATCTCTGGGCTTCCTG  749

seq1  CCATGTGGTAGTCACCTAAGAGCATCGTATCAGCTGTAGGCCTGAGCGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGTAGTCACCTAAGAGCATCGTATCAGCTGTAGGCCTGAGCGTG  799

seq1  CGCAGCGTTCAGATCCATCATGATGGCATTAAAGCAAGCCCTGCTCCCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCGTTCAGATCCATCATGATGGCATTAAAGCAAGCCCTGCTCCCCT  849

seq1  CTGGGAATCTCATTAAAGAGGGAATTC  873
      |||||||||||||||||||||||||||
seq2  CTGGGAATCTCATTAAAGAGGGAATTC  876

seq1: chr5_117562230_117563119
seq2: B6Ng01-221L05.g_65_956

seq1  GAATTCAAGAGAGTTCAAGGCTAGGCTCATCTAGGGAACAAATTCTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGAGTTCAAGGCTAGGCTCATCTAGGGAACAAATTCTGTGA  50

seq1  TAGCCAGGACTACACAGTGAAACCCTGTCTCAAAAAAAATGAGTAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGGACTACACAGTGAAACCCTGTCTCAAAAAAAATGAGTAAATAA  100

seq1  AAATAATAAGGCCAGGCGTGGGGACAACACCATCAATCCCTGCATTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAAGGCCAGGCGTGGGGACAACACCATCAATCCCTGCATTCTGT  150

seq1  GAACTGAAGGTTAGTCCGGTCTCAAAACAACGCTCTCACCCCTCTCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAAGGTTAGTCCGGTCTCAAAACAACGCTCTCACCCCTCTCAGAA  200

seq1  AACAGTCAGAGCTTTAGCTGACTGTGGCTTTCGTGAAGATGTGTGAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCAGAGCTTTAGCTGACTGTGGCTTTCGTGAAGATGTGTGAGAAC  250

seq1  AAACAGAATGTGGCAGGAAAGGGGGTGGCAGCCTGCTCCCTCAATTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAATGTGGCAGGAAAGGGGGTGGCAGCCTGCTCCCTCAATTCCCA  300

seq1  GGACACTTGGGACACCCAGCATATGACCCACAATATAGGACAGGGGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTTGGGACACCCAGCATATGACCCACAATATAGGACAGGGGCTGG  350

seq1  GGGCCTGCAAGATACCCATTGTCCTGGGTACCAGTTTTCACAGCAATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGCAAGATACCCATTGTCCTGGGTACCAGTTTTCACAGCAATTCT  400

seq1  AACGGCCTTACTGCCCCAGCCCACCATGCCCATCACGGCTCCTGCTAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGCCTTACTGCCCCAGCCCACCATGCCCATCACGGCTCCTGCTAGTC  450

seq1  TAGCCTCCGAAGAGGCTCCTAACAGGAAGGCTCCTAGATGCAACCAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCCGAAGAGGCTCCTAACAGGAAGGCTCCTAGATGCAACCAGAGA  500

seq1  GGGAAACTACAGAAACATCTGTGCTTTGCAAGCACTGAGGTCAAAAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACTACAGAAACATCTGTGCTTTGCAAGCACTGAGGTCAAAAGGGG  550

seq1  GCCTCTGTATTCCAGAGAAAAGGCACCCGGGCTACTCACTGTTCCTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGTATTCCAGAGAAAAGGCACCCGGGCTACTCACTGTTCCTTCAT  600

seq1  CTCCACGTAGTCTTCCTCATCGTGCTTCGCCAGGTCAGTCTCGCTGGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACGTAGTCTTCCTCATCGTGCTTCGCCAGGTCAGTCTCGCTGGCAT  650

seq1  CCTCGGTGTCTGGGCGAAACAAGGGGAGAAGCGGGCAGTTATGATCAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGTGTCTGGGCGAAACAAGGGGAGAAGCGGGCAGTTATGATCAGGT  700

seq1  TCACAGAATCCGCATCATGACAGCGTAATCGGCAGACTTCTGGGAGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAATCCGCATCATGACAGCGTAATCGGCAGACTTCTGGGAGAAGA  750

seq1  AGGAGTTTCTATCCCATGTGGGTCTGCATGAACCTGCTAATAAAAAGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTCTATCCCATGTGGGTCTGCATGAACCTGCTAATAAAAAGTGT  800

seq1  GTGAGTGTGTGTGTGTGTGTGTGTTTAAAATAAAAAAGAG-AAATGCCAC  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGAGTGTGTGTGTGTGTGTGTGTTTAAAATAAAAAAGAGAAAATGCCAC  850

seq1  TCCAA-CTTGGGTTTATGCTGAGAATGTACTTTAATATGACG  890
      ||||| ||||||||||||||||||||||||||||||||||||
seq2  TCCAATCTTGGGTTTATGCTGAGAATGTACTTTAATATGACG  892