BAC Information

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BAC

Clone NameB6Ng01-222B20
Chromosome5 (Build37)
Map Location 32,363,129 - 32,547,150
singlet/doubletdoublet
Overlap geneBre, Fosl2, LOC672217, Plb1
Upstream geneCad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000
Downstream geneEG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222B20.bB6Ng01-222B20.g
ACCGA037224GA037225
length1,1411,148
definitionB6Ng01-222B20.b B6Ng01-222B20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,546,023 - 32,547,150)(32,363,129 - 32,364,282)
sequence
gaattcatgtcttcagagttagactgtattccctgctctgaagacttctt
gtagacaaagtagttgctattttccaaggactgactaggaggagctagac
caaatctcaggttcaaggcccacacagaccaaagcagtgcaggacttaga
agtgtagttttcaaactgacagatataagtgattatattctcgtgaattt
agtttgatgaataaatacaccactttaaaaaacagaccacagaacatctg
agggtatcgaatataacagcggtaagaaaagcacccggggaatttgtttt
gggtacatgttgtgaagtgtgtggttcttaatgtgggtcacagttgatat
ttgaaaaccactatattagtagaaaggagagaggtctgttttgtctgatg
atgcacctagctacaattcatctatattccagagtatctaaaagcaacaa
ctgtggttggttcccagccttgggaaggaaggcaaatggggtcaagcttt
ttgaagattgtgggcaaagctttaggtagattgccctattttttcaataa
gaaaaaccaggctcacttgagtgaacatggaccacatgataggaagtgtg
cattactagcccatcatctcagatgtgaatctactggtacatgtttccct
atacaggtacactctaacaaaacagtatcaaacgctcagaaatgggctta
ttcaactacccaatagcagagactgctcatgaatcaagatactaaagaca
cagacttcattgggggaacaaagaaggggatcaacaatgtagatcaggag
aaaacccacgatttttaaatatctcattcttattagtaagtagagagagt
ttgaagtggcagaccacagaagaaagagagacactcggtctgctttgatc
tcagctagctgcccagaagctagccgagggccactgtagcaggcattcac
tgtgttgaatgaataaattaatgagtgaaagttttctttcatttctcgga
aagaagccgagaaccaagaactacctacagaaagatcagcttcattagtg
cccaactagaagaagacaaaagcatacaaatcatgggcttgagacattca
ggctgaggacaaagagaacgtttctctctgtgccatgaagc
gaattcttttgtcctcttaatatattggtccttctgccattatggaatgt
ctatatctggtaagacttcttgacttgaagtcttctttaatataaaaata
gctgttccagctttctctccacatagttttgtatgctgtctttcttcatc
tctttttgttttacttagtctctgtctgtatgtgtgtctagaaatctttt
gtaggttttgattattttaatctagtctgatggtctgtgtcccttaatat
ttagtttgtttatacttaacataacaaatgagtttattacgtttaagtct
tacatctttcttttttcaaattttttaatttcctttgtttttaattcctt
tattttctcttccaatgttcttttggtttgttgaagtgttttggcatata
tcttgatgtcccttttacctcttattggcttattaactctattgcttcat
atattttggtaatatgtgcagtaaatatgatctttacttgacacataaat
ttatatatataatacctatcataattaatattacaatgtttcatacataa
tctaaatgtctaaatctataaaaggtgagtctctttatgcccctagttag
cctttgtgctatgatatccatatgttttgatttttcatgtgacttttaac
agtcaaacagctttaaaaaattttttttctaatcaaaggaaaactataat
ctacttcattctggttctagataaaggtagcagagaatgatttttttgag
agtatcttactatgtagccttggctgtcttggagctcactctgtagacca
gactgacctccaactcagagatctgcctgcctctgcttccctattgctgg
gaagggtaagtctcaacacccaacagaaatgtatttttaaaatctctctt
tgtttttttagaacaaccatcagagagatgacattaagctcagaacactg
agacttagagtcattacctaaagaaattcctcctgcatgacattcaggtg
ccttcttactttccctgtagacttccccgctaatagtacatcctccactt
gttacagatcacactgcaaattcttattttcccttctcatagataagtat
ccaaagatactagctagcttcttgtaactaggcagttcagccacttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_32546023_32547150
seq2: B6Ng01-222B20.b_44_1184 (reverse)

seq1  GCTTCATGGCACA-AGGGAAACGTTCTCTTTGTCCTCAGCTTG-ATGTCC  48
      ||||||||||||| || ||||||||||||||||||||||| || ||||| 
seq2  GCTTCATGGCACAGAGAGAAACGTTCTCTTTGTCCTCAGCCTGAATGTCT  50

seq1  TCAG-CCATGATTTGTATGCCTTTTGTCTTC-TCTAGTT-GGCACT-ATG  94
        || |||||||||||||| ||||||||||| ||||||| |||||| |||
seq2  CAAGCCCATGATTTGTATG-CTTTTGTCTTCTTCTAGTTGGGCACTAATG  99

seq1  -AGCTGATCTTTCTGT-GGTAG-TCTTGG-TCTCGGCTTCTTTCCGAG-A  139
       ||||||||||||||| ||||| |||||| |||||||||||||||||| |
seq2  AAGCTGATCTTTCTGTAGGTAGTTCTTGGTTCTCGGCTTCTTTCCGAGAA  149

seq1  ATG-AAGAAAACTTTCACTCATTAATTTATTCATTCAACACAGTGAATGC  188
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAAAACTTTCACTCATTAATTTATTCATTCAACACAGTGAATGC  199

seq1  CTGCTACAGTGGCCCTCGGCTAGCTTCTGGGCAGCTAGCTGAGATCAAAG  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACAGTGGCCCTCGGCTAGCTTCTGGGCAGCTAGCTGAGATCAAAG  249

seq1  CAGACCGAGTGTCTCTCTTTCTTCTGTGGTCTGCCACTTCAAACTCTCTC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCGAGTGTCTCTCTTTCTTCTGTGGTCTGCCACTTCAAACTCTCTC  299

seq1  TACTTACTAATAAGAATGAGATATTTAAAAATCGTGGGTTTTCTCCTGAT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTAATAAGAATGAGATATTTAAAAATCGTGGGTTTTCTCCTGAT  349

seq1  CTACATTGTTGAT-CCCTTCTTTGTT-CCCCAATGAAGTCTGTGTCTTTA  386
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  CTACATTGTTGATCCCCTTCTTTGTTCCCCCAATGAAGTCTGTGTCTTTA  399

seq1  GTATCTTGATTCATGAGCAGTCTCTGCTATTGGGTAGTTGAATAAGCCCA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTGATTCATGAGCAGTCTCTGCTATTGGGTAGTTGAATAAGCCCA  449

seq1  TTTCTGAGCGTTTGATACTGTTTTGTTAGAGTGTACCTGTATAGGGAAAC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGCGTTTGATACTGTTTTGTTAGAGTGTACCTGTATAGGGAAAC  499

seq1  ATGTACCAGTAGATTCACATCTGAGATGATGGGCTAGTAATGCACACTTC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCAGTAGATTCACATCTGAGATGATGGGCTAGTAATGCACACTTC  549

seq1  CTATCATGTGGTCCATGTTCACTCAAGTGAGCCTGGTTTTTCTTATTGAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATGTGGTCCATGTTCACTCAAGTGAGCCTGGTTTTTCTTATTGAA  599

seq1  AAAATAGGGCAATCTACCTAAAGCTTTGCCCACAATCTTCAAAAAGCTTG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGGCAATCTACCTAAAGCTTTGCCCACAATCTTCAAAAAGCTTG  649

seq1  ACCCCATTTGCCTTCCTTCCCAAGGCTGGGAACCAACCACAGTTGTTGCT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATTTGCCTTCCTTCCCAAGGCTGGGAACCAACCACAGTTGTTGCT  699

seq1  TTTAGATACTCTGGAATATAGATGAATTGTAGCTAGGTGCATCATCAGAC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATACTCTGGAATATAGATGAATTGTAGCTAGGTGCATCATCAGAC  749

seq1  AAAACAGACCTCTCTCCTTTCTACTAATATAGTGGTTTTCAAATATCAAC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGACCTCTCTCCTTTCTACTAATATAGTGGTTTTCAAATATCAAC  799

seq1  TGTGACCCACATTAAGAACCACACACTTCACAACATGTACCCAAAACAAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCCACATTAAGAACCACACACTTCACAACATGTACCCAAAACAAA  849

seq1  TTCCCCGGGTGCTTTTCTTACCGCTGTTATATTCGATACCCTCAGATGTT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCGGGTGCTTTTCTTACCGCTGTTATATTCGATACCCTCAGATGTT  899

seq1  CTGTGGTCTGTTTTTTAAAGTGGTGTATTTATTCATCAAACTAAATTCAC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTCTGTTTTTTAAAGTGGTGTATTTATTCATCAAACTAAATTCAC  949

seq1  GAGAATATAATCACTTATATCTGTCAGTTTGAAAACTACACTTCTAAGTC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATAATCACTTATATCTGTCAGTTTGAAAACTACACTTCTAAGTC  999

seq1  CTGCACTGCTTTGGTCTGTGTGGGCCTTGAACCTGAGATTTGGTCTAGCT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGCTTTGGTCTGTGTGGGCCTTGAACCTGAGATTTGGTCTAGCT  1049

seq1  CCTCCTAGTCAGTCCTTGGAAAATAGCAACTACTTTGTCTACAAGAAGTC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAGTCAGTCCTTGGAAAATAGCAACTACTTTGTCTACAAGAAGTC  1099

seq1  TTCAGAGCAGGGAATACAGTCTAACTCTGAAGACATGAATTC  1128
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGCAGGGAATACAGTCTAACTCTGAAGACATGAATTC  1141

seq1: chr5_32363129_32364282
seq2: B6Ng01-222B20.g_68_1215

seq1  GAATTCTTTTGTCCTCTTAATATATTGGTCCTTCTGCCATTATGGAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTCCTCTTAATATATTGGTCCTTCTGCCATTATGGAATGT  50

seq1  CTATATCTGGTAAGACTTCTTGACTTGAAGTCTTCTTTAATATAAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCTGGTAAGACTTCTTGACTTGAAGTCTTCTTTAATATAAAAATA  100

seq1  GCTGTTCCAGCTTTCTCTCCACATAGTTTTGTATGCTGTCTTTCTTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCCAGCTTTCTCTCCACATAGTTTTGTATGCTGTCTTTCTTCATC  150

seq1  TCTTTTTGTTTTACTTAGTCTCTGTCTGTATGTGTGTCTAGAAATCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGTTTTACTTAGTCTCTGTCTGTATGTGTGTCTAGAAATCTTTT  200

seq1  GTAGGTTTTGATTATTTTAATCTAGTCTGATGGTCTGTGTCCCTTAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTTTGATTATTTTAATCTAGTCTGATGGTCTGTGTCCCTTAATAT  250

seq1  TTAGTTTGTTTATACTTAACATAACAAATGAGTTTATTACGTTTAAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTGTTTATACTTAACATAACAAATGAGTTTATTACGTTTAAGTCT  300

seq1  TACATCTTTCTTTTTTCAAATTTTTTAATTTCCTTTGTTTTTAATTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTTTCTTTTTTCAAATTTTTTAATTTCCTTTGTTTTTAATTCCTT  350

seq1  TATTTTCTCTTCCAATGTTCTTTTGGTTTGTTGAAGTGTTTTGGCATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTCTTCCAATGTTCTTTTGGTTTGTTGAAGTGTTTTGGCATATA  400

seq1  TCTTGATGTCCCTTTTACCTCTTATTGGCTTATTAACTCTATTGCTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATGTCCCTTTTACCTCTTATTGGCTTATTAACTCTATTGCTTCAT  450

seq1  ATATTTTGGTAATATGTGCAGTAAATATGATCTTTACTTGACACATAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGGTAATATGTGCAGTAAATATGATCTTTACTTGACACATAAAT  500

seq1  TTATATATATAATACCTATCATAATTAATATTACAATGTTTCATACATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATATAATACCTATCATAATTAATATTACAATGTTTCATACATAA  550

seq1  TCTAAATGTCTAAATCTATAAAAGGTGAGTCTCTTTATGCCCCTAGTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATGTCTAAATCTATAAAAGGTGAGTCTCTTTATGCCCCTAGTTAG  600

seq1  CCTTTGTGCTATGATATCCATATGTTTTGATTTTTCATGTGACTTTTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGCTATGATATCCATATGTTTTGATTTTTCATGTGACTTTTAAC  650

seq1  AGTCAAACAGCTTTAAAAAATTTTTTTTCTAATCAAAGGAAAACTATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAACAGCTTTAAAAAATTTTTTTTCTAATCAAAGGAAAACTATAAT  700

seq1  CTACTTCATTCTGGTTCTAGATAAAGGTAGCAGAGAATGATTTTTTTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCATTCTGGTTCTAGATAAAGGTAGCAGAGAATGATTTTTTTGAG  750

seq1  AGTATCTTACTATGTAGCCTTGGCTGTCTTGGAGCTCACTCTGTAGACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTTACTATGTAGCCTTGGCTGTCTTGGAGCTCACTCTGTAGACCA  800

seq1  GACTGACCTCCAACTCAGAGATCTGCCTGCCTCTGCTTCCCTATTGCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACCTCCAACTCAGAGATCTGCCTGCCTCTGCTTCCCTATTGCTGG  850

seq1  GAAGGGTAAGTCTCAACACCCAACAGAAATGTATTTTTAAAATCTCTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTAAGTCTCAACACCCAACAGAAATGTATTTTTAAAATCTCTCTT  900

seq1  TGTTTTTTTAGAACAAACCATCAGAGAGATGACATTTAAGCCAAGAACAC  950
      |||||||||||||| ||||||||||||||||||| ||||||  |||||||
seq2  TGTTTTTTTAGAAC-AACCATCAGAGAGATGACA-TTAAGCTCAGAACAC  948

seq1  TGAGACTTAGAGTCATTACCTAAAGAAAATTCCTCCTGCATGACATTCAG  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGAGACTTAGAGTCATTACCTAAAG-AAATTCCTCCTGCATGACATTCAG  997

seq1  GTGCC-TCTACCTTCCCTTGTAGACTTCCCCGCTAATAGTACATCCT-CA  1048
      ||||| |||  ||| || ||||||||||||||||||||||||||||| ||
seq2  GTGCCTTCTTACTTTCCCTGTAGACTTCCCCGCTAATAGTACATCCTCCA  1047

seq1  C-TGTTACAGATCACCACTGCAAAAATTCTTA-TTCCCCTTCTCATAGAT  1096
      | |||||||||||| ||||||  ||||||||| || ||||||||||||||
seq2  CTTGTTACAGATCA-CACTGC--AAATTCTTATTTTCCCTTCTCATAGAT  1094

seq1  AAAGTATTCCCAAAGATACATAGCTAGCTTCTTGTAGACCAGGCAG-TCA  1145
       ||||||  |||||||||| |||||||||||||||| || |||||| |||
seq2  -AAGTAT--CCAAAGATAC-TAGCTAGCTTCTTGTA-ACTAGGCAGTTCA  1139

seq1  GCCACTTGA  1154
      |||||||||
seq2  GCCACTTGA  1148