BAC Information

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BAC

Clone NameB6Ng01-222G18
Chromosome5 (Build37)
Map Location 17,072,762 - 17,184,928
singlet/doubletdoublet
Overlap geneSema3c
Upstream geneHgf, EG668131, LOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927
Downstream geneCd36, Gnat3, Gnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222G18.bB6Ng01-222G18.g
ACCGA037441GA037442
length1,0411,186
definitionB6Ng01-222G18.b B6Ng01-222G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,183,876 - 17,184,928)(17,072,762 - 17,073,957)
sequence
gaattctttcaataactcctttgaagttttctattaagttacaaggaacc
aatgcatacaactaaaggctcaatagacatatctggagtttgtgactgaa
ttcacactaacaccctagtacaaaactaatctacagaaaaatgtacacat
gaaattttgggtatatgagaaaggcatgcaaaacatgataaagttgacat
tgcactcctattaagccaattttgaaatgcaaaaatattattatattata
gaataatagaaccagttcagtttttttagatcctcataataaaggatgta
gattagtgaagaactgaaagttatttcaatgcaaattcaatcttcccttt
agttttcataatgcatatttattataaaatttaaataattaaatatacac
atttttatgggttctctgtatatacttgtgctaccactgccaaaattcag
aaaagaaacagatccatcattactaaaacctaggattccatagattttat
tagaatttacttttgttatttaaataaaatacttccagcattttacttct
tcaatttaatttatagtttcattttttcctagagaacaacacataattgt
ttttaacaatttaactctttgaaaacttttttgggaagaattccttacga
tcaaatatattttgataatctggaacaagtaaagagcaggaattgtttaa
ctgaggagctgtgactgctccagggttaccttgatgtggtgaagatgcca
tacacgagtgttgtccttggattgtcagtttccagcagaaagacatcctc
tatacaaggaaaaggacattcttttaatctttcaatgaaattttaattgc
ttagttttgattaccccaagacacaaattcactatgaaagggagtctcag
gatgctgctctggagatcatacatttggtatatgtgatgatacacgcttg
gacactaataaaatgctggccgggcaatggggggcatcatgtagactata
ttctctatggaatgatgatataattgcttagaggaagaccc

gaattctttttaaaggacaatttaaaatcattgattattaatatattaga
taattgcactttttatatgagttcttttgagtaacctatatctatctaaa
aattaagtaaagaaataaaatgatgagtgacctttataatttaatcaatt
aaatgtaaacataaaattaataaaatttcaggccttagaagattgtatct
tattaagattctagtaaaataaacttaaaatgaaacaaactaaacttaag
tatgagaataaataagaacatattcaatttctagaatggataactagttt
tctctttattttataaatttttataaaatatttttaaaattgtaatctga
gaaatcaagaatatttttagaattttagctttaaaaatatttcagcgaag
aatttaaaaattaactcataccatttgtgtttttagtaattgattgccag
ctattaaaaagttcttgaagtttgttcaaaacaaatataaacttcaagtg
tgttctaaaggtggaaataccaactaaatacctttggtgacaaaattgtg
accctcaaaaacatattacctaagatgtctctcctaatctgcatttgtcg
aattgccctactataaaagacaacaaaatatttgatttaggtttcaaaag
tccacaaaacattctttaaacaaatgtttagttgaatttagcagccagct
accaagaggtgatgtgtgcccaaaattcactctgttgctagctataaaat
gcccaagaactcaaaaatgatgcctcacatcatggtaacattaaagaaca
tggaagaactaatgttatagtagtaagacagaaaacagaaactgttagca
cattattgtatttaattaacctataaacctaacaatagttttaattcata
ttttcaaacaaaacttgatgtcaaacaactccccaaatacataattagta
ggttaagaattagaaataaatgtcaaacatacttgagatatatcggactg
ataatgttactatatatactaaccactacgtgatgtgttttgctgaggtg
aagaacgactgcagagagatcccacgctgagtgagccgctggcctgaagt
atttgagtaagagaaaagcacattgtgtagttccagaccttggaggagtc
catgggaatgtcaaactgaatgaaacacacttcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17183876_17184928
seq2: B6Ng01-222G18.b_43_1083 (reverse)

seq1  GGGTCTTCCTCTTAGCATTTATATATCATCATTTTCATAGAG-ATATAGT  49
      |||||||||||| |||| |  |||||||||| || ||||||| |||||||
seq2  GGGTCTTCCTCTAAGCAAT--TATATCATCA-TTCCATAGAGAATATAGT  47

seq1  CTACATGAATGCCCCCAATGCCCGGCCAGCATTTTATTTAGGTGTCCAAG  99
      ||||||||   |||||| ||||||||||||||||||||   |||||||||
seq2  CTACATGATGCCCCCCATTGCCCGGCCAGCATTTTATT--AGTGTCCAAG  95

seq1  CGTGTATCATCACATTATACCAAATTGTATTGATCTCCAGAAGCAGCATC  149
      |||||||||||||| ||||||||| |||| |||||||||| |||||||||
seq2  CGTGTATCATCACA-TATACCAAA-TGTA-TGATCTCCAG-AGCAGCATC  141

seq1  CTGAGGACTCCCTTTCATAGTTGAAATTTGTGTCTTGGGGTAATCAAAAC  199
      |||| ||||||||||||||||   ||||||||||||||||||||||||||
seq2  CTGA-GACTCCCTTTCATAGT--GAATTTGTGTCTTGGGGTAATCAAAAC  188

seq1  TAAGCAATTAAAATTTCATTGAAAGATTAAAAGAATGTCCTTTTCCTTTG  249
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAAGCAATTAAAATTTCATTGAAAGATTAAAAGAATGTCCTTTTCC-TTG  237

seq1  TATAGAGGATGTCTTTCTGCTGGAAACTGACAATCCAAGGACAACACTCG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGGATGTCTTTCTGCTGGAAACTGACAATCCAAGGACAACACTCG  287

seq1  TGTATGGCATCTTCACCACATCAAGGTAACCCTGGAGCAGTCACAGCTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGCATCTTCACCACATCAAGGTAACCCTGGAGCAGTCACAGCTCC  337

seq1  TCAGTTAAACAATTCCTGCTCTTTACTTGTTCCAGATTATCAAAATATAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAAACAATTCCTGCTCTTTACTTGTTCCAGATTATCAAAATATAT  387

seq1  TTGATCGTAAGGAATTCTTCCCAAAAAAGTTTTCAAAGAGTTAAATTGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCGTAAGGAATTCTTCCCAAAAAAGTTTTCAAAGAGTTAAATTGTT  437

seq1  AAAAACAATTATGTGTTGTTCTCTAGGAAAAAATGAAACTATAAATTAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATTATGTGTTGTTCTCTAGGAAAAAATGAAACTATAAATTAAA  487

seq1  TTGAAGAAGTAAAATGCTGGAAGTATTTTATTTAAATAACAAAAGTAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAGTAAAATGCTGGAAGTATTTTATTTAAATAACAAAAGTAAAT  537

seq1  TCTAATAAAATCTATGGAATCCTAGGTTTTAGTAATGATGGATCTGTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAAAATCTATGGAATCCTAGGTTTTAGTAATGATGGATCTGTTTC  587

seq1  TTTTCTGAATTTTGGCAGTGGTAGCACAAGTATATACAGAGAACCCATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAATTTTGGCAGTGGTAGCACAAGTATATACAGAGAACCCATAA  637

seq1  AAATGTGTATATTTAATTATTTAAATTTTATAATAAATATGCATTATGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTATATTTAATTATTTAAATTTTATAATAAATATGCATTATGAA  687

seq1  AACTAAAGGGAAGATTGAATTTGCATTGAAATAACTTTCAGTTCTTCACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAGGGAAGATTGAATTTGCATTGAAATAACTTTCAGTTCTTCACT  737

seq1  AATCTACATCCTTTATTATGAGGATCTAAAAAAACTGAACTGGTTCTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACATCCTTTATTATGAGGATCTAAAAAAACTGAACTGGTTCTATT  787

seq1  ATTCTATAATATAATAATATTTTTGCATTTCAAAATTGGCTTAATAGGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATAATATAATAATATTTTTGCATTTCAAAATTGGCTTAATAGGAG  837

seq1  TGCAATGTCAACTTTATCATGTTTTGCATGCCTTTCTCATATACCCAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGTCAACTTTATCATGTTTTGCATGCCTTTCTCATATACCCAAAA  887

seq1  TTTCATGTGTACATTTTTCTGTAGATTAGTTTTGTACTAGGGTGTTAGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTGTACATTTTTCTGTAGATTAGTTTTGTACTAGGGTGTTAGTG  937

seq1  TGAATTCAGTCACAAACTCCAGATATGTCTATTGAGCCTTTAGTTGTATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCAGTCACAAACTCCAGATATGTCTATTGAGCCTTTAGTTGTATG  987

seq1  CATTGGTTCCTTGTAACTTAATAGAAAACTTCAAAGGAGTTATTGAAAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTTCCTTGTAACTTAATAGAAAACTTCAAAGGAGTTATTGAAAGA  1037

seq1  ATTC  1053
      ||||
seq2  ATTC  1041


seq1: chr5_17072762_17073957
seq2: B6Ng01-222G18.g_65_1250

seq1  GAATTCTTTTTAAAGGACAATTTAAAATCATTGATTATTAATATATTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTAAAGGACAATTTAAAATCATTGATTATTAATATATTAGA  50

seq1  TAATTGCACTTTTTATATGAGTTCTTTTGAGTAACCTATATCTATCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCACTTTTTATATGAGTTCTTTTGAGTAACCTATATCTATCTAAA  100

seq1  AATTAAGTAAAGAAATAAAATGATGAGTGACCTTTATAATTTAATCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGTAAAGAAATAAAATGATGAGTGACCTTTATAATTTAATCAATT  150

seq1  AAATGTAAACATAAAATTAATAAAATTTCAGGCCTTAGAAGATTGTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAACATAAAATTAATAAAATTTCAGGCCTTAGAAGATTGTATCT  200

seq1  TATTAAGATTCTAGTAAAATAAACTTAAAATGAAACAAACTAAACTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGATTCTAGTAAAATAAACTTAAAATGAAACAAACTAAACTTAAG  250

seq1  TATGAGAATAAATAAGAACATATTCAATTTCTAGAATGGATAACTAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAATAAATAAGAACATATTCAATTTCTAGAATGGATAACTAGTTT  300

seq1  TCTCTTTATTTTATAAATTTTTATAAAATATTTTTAAAATTGTAATCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTATTTTATAAATTTTTATAAAATATTTTTAAAATTGTAATCTGA  350

seq1  GAAATCAAGAATATTTTTAGAATTTTAGCTTTAAAAATATTTCAGCGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAAGAATATTTTTAGAATTTTAGCTTTAAAAATATTTCAGCGAAG  400

seq1  AATTTAAAAATTAACTCATACCATTTGTGTTTTTAGTAATTGATTGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAATTAACTCATACCATTTGTGTTTTTAGTAATTGATTGCCAG  450

seq1  CTATTAAAAAGTTCTTGAAGTTTGTTCAAAACAAATATAAACTTCAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAAAAGTTCTTGAAGTTTGTTCAAAACAAATATAAACTTCAAGTG  500

seq1  TGTTCTAAAGGTGGAAATACCAACTAAATACCTTTGGTGACAAAATTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAAAGGTGGAAATACCAACTAAATACCTTTGGTGACAAAATTGTG  550

seq1  ACCCTCAAAAACATATTACCTAAGATGTCTCTCCTAATCTGCATTTGTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAAAAACATATTACCTAAGATGTCTCTCCTAATCTGCATTTGTCG  600

seq1  AATTGCCCTACTATAAAAGACAACAAAATATTTGATTTAGGTTTCAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCCTACTATAAAAGACAACAAAATATTTGATTTAGGTTTCAAAAG  650

seq1  TCCACAAAACATTCTTTAAACAAATGTTTAGTTGAATTTAGCAGCCAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAAACATTCTTTAAACAAATGTTTAGTTGAATTTAGCAGCCAGCT  700

seq1  ACCAAGAGGTGATGTGTGCCCAAAATTCACTCTGTTGCTAGCTATAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAGGTGATGTGTGCCCAAAATTCACTCTGTTGCTAGCTATAAAAT  750

seq1  GCCCAAGAACTCAAAAATGATGCCTCACATCATGGTAACATTAAAGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGAACTCAAAAATGATGCCTCACATCATGGTAACATTAAAGAACA  800

seq1  TGGAAGAACTAATGTTATAGTAGTAAGACAGAAAACAGAAACTGTTAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAACTAATGTTATAGTAGTAAGACAGAAAACAGAAACTGTTAGCA  850

seq1  CATTATTGTATTTAATTAACCTATAAACCTAACAATAGTTTTAATTCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGTATTTAATTAACCTATAAACCTAACAATAGTTTTAATTCATA  900

seq1  TTTTCAAACAAAACTTGATGTCAAACAACTCCCCAAATACATAATTAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAACAAAACTTGATGTCAAACAACTCCCCAAATACATAATTAGTA  950

seq1  GGTTAAGAATTAGAAATAAATGTCAAACATACTTGAGATATATCGGAACT  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGTTAAGAATTAGAAATAAATGTCAAACATACTTGAGATATATCGG-ACT  999

seq1  GAT-ATGTTACTATATTATAACTAA-CACTACGTGATGTGTTTTGCTGAG  1048
      ||| ||||||||||| ||| ||||| ||||||||||||||||||||||||
seq2  GATAATGTTACTATA-TAT-ACTAACCACTACGTGATGTGTTTTGCTGAG  1047

seq1  GGTTGAAGAAAGGACTGCAGAGAGAT-CCACGCTTGAGGTGAGCCGGTTT  1097
      |  ||||| || |||||||||||||| |||||| ||| ||||||| | | 
seq2  G--TGAAG-AACGACTGCAGAGAGATCCCACGC-TGA-GTGAGCC-GCTG  1091

seq1  GCCTGAAGGTGGTTTGAGGGTAGAGAAAAGCACA-TGTGTAGTCACAGAC  1146
      ||||||||    ||||| |  ||||||||||||| ||||||||  |||||
seq2  GCCTGAAG--TATTTGA-GTAAGAGAAAAGCACATTGTGTAGTTCCAGAC  1138

seq1  CTGGGAGGAGT-CATGGGATGGTCAAAAACTGAAATGAAACACACTTCAC  1195
      || |||||||| |||||||  |||  |||||| |||||||||||||||||
seq2  CTTGGAGGAGTCCATGGGAATGTC--AAACTG-AATGAAACACACTTCAC  1185

seq1  C  1196
      |
seq2  C  1186


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