BAC Information

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BAC

Clone NameB6Ng01-222O04
Chromosome5 (Build37)
Map Location 49,413,499 - 49,535,879
singlet/doubletdoublet
Overlap genenone
Upstream geneSlit2, 4933428G09Rik, Kcnip4, LOC100041668
Downstream geneLOC100041659, EG433885, LOC666223, Gpr125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222O04.bB6Ng01-222O04.g
ACCGA037778GA037779
length1,1201,214
definitionB6Ng01-222O04.b B6Ng01-222O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,413,499 - 49,414,630)(49,534,696 - 49,535,879)
sequence
gaattcttgaggagactatattaagtaataagctagacagacagacagat
acacacacacacacaaacagagagagagagagagagagagagagagagag
aggcagacagcgagacagaaagacagagacagaaagacagagacagaatg
catgattgcaattatatgagattcccaatgagccttatttatagaataaa
atggaatagtatttaggaaaattggaagagagaaaatgggaactgataat
caatagtgtataattatggtgaaataagacaaactaattctttaaatcta
atctactatagtatcacctatagtcaacataacacatactcttaaaattt
aagatgctagatattgtttcaaggattcttgtaacactaacaccagagat
ctactctagatggaagtatattttgttgaaaatgaaaaccaggaaagcaa
ttctggaatggaaggaggaaagaaaatgtgagagaaatattgagagttat
atagcaaaaattgcaggtcaataagctattgaactcctctgcttcaggca
tttccataaggaagttctggaaagttttaattgacaattttggatgtcaa
tgttactataagagggctggaaggcacagccatgtacactattctagagc
tgaaaatgtatctccttagatctacataggaaggatgtatctaattagtg
tttgaattttatatcaagcaactcagttccctcttaaagggtccaatgta
attaattcttattaaatattttagcttacttgtcagtcaactgcttttca
atataaatgtgctgtcatattagtagcaatggaatacacagtttcaaatt
tagttgaacatggttgagtgattaggaggcaacgtgtaaagatactgagt
gactaatgcatcactatatttttcctcagagaattttgtgtaatagaacc
acctatttttattgtctcatgtcaacctactggctatgactgatagctat
taaattgttcttttccccagttgggtctagattgcgacattatagcacag
cagtcactaagagaaagacatgccagttatttgtctattagtcttctcat
aagtaagcatcatttacatc

gaattctataaaagtgaaaagaattaaaatggcttccacatgggactgaa
ttgtggagcttaagctgtttctgcaaacttagatgttgtttgtatgtgga
atgggaactccttaatgtcataaattaataatggagtacacacagagaga
aagagagagagagacagagagacagagagagacagagagagacagagaga
gacagagagagacagagagaaacagagacagacacagagagatttcatca
tgtttgtggtttctcattagaagaataagattattattctgttcatttta
taactatgtctagcattaccccttttctttcttcatttcttgttatatcc
acattttggtgaggtgacactcccagagagccttgcctaatctcctccac
taagaaggcattctcttgggcccttcttatagcaattatgattctctgaa
ctcctcaaggatcagatgcgaactttcttttagtattctgactgataact
ctgtagtataaaagtatccatgcatctgtccgtgtattcatggagaaggc
agttatcactgcctactacaaagagactcagacacaagaaatgaactaaa
agttacttgcagttgcccaggttcagcaaacttggacttctcactatcaa
tgtgatacaatttgacttttttaaacctctaggctttagttccactctaa
cattataaatcaaaatataagtaattgctgtgttcataattttatcattt
attagtaatagttatgagctgtagtcttacctagagtcttgcattctatc
catattgtcacaaatagatgtatttactgagatgttaataccccagtttt
acagttgataaaaagggacaatgaaaggtacatacatcaacatgtgcata
ggtagcatatatggccagtcagagaaaatcttgtggatatcagttctttc
ctttcacgatatgatttcttgggattaaattcaatctttaggctatctat
acgcatttttacacttgctggtatcatttctactggaatcaatttctatt
aaaataggatgatttaaggtttctaatggtaatactggtggaaccttctg
actcaaggcttatgatcatacaaaggaaggctaaaggatgtgtaagaatt
aaagggtgttttatttcactggaatgctttcatctcattttgtgattcag
gtggaggattaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49413499_49414630
seq2: B6Ng01-222O04.b_44_1163

seq1  GAATTCTTGAGGAGACTATATTAAGTAATAAGCTAGACAGACAGACAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGGAGACTATATTAAGTAATAAGCTAGACAGACAGACAGAT  50

seq1  ACACACACACACACAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  100

seq1  AGGCAGACAGCGAGACAGAAAGACAGAGACAGAAAGACAGAGACAGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGACAGCGAGACAGAAAGACAGAGACAGAAAGACAGAGACAGAATG  150

seq1  CATGATTGCAATTATATGAGATTCCCAATGAGCCTTATTTATAGAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTGCAATTATATGAGATTCCCAATGAGCCTTATTTATAGAATAAA  200

seq1  ATGGAATAGTATTTAGGAAAATTGGAAGAGAGAAAATGGGAACTGATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATAGTATTTAGGAAAATTGGAAGAGAGAAAATGGGAACTGATAAT  250

seq1  CAATAGTGTATAATTATGGTGAAATAAGACAAACTAATTCTTTAAATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTGTATAATTATGGTGAAATAAGACAAACTAATTCTTTAAATCTA  300

seq1  ATCTACTATAGTATCACCTATAGTCAACATAACACATACTCTTAAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTATAGTATCACCTATAGTCAACATAACACATACTCTTAAAATTT  350

seq1  AAGATGCTAGATATTGTTTCAAGGATTCTTGTAACACTAACACCAGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCTAGATATTGTTTCAAGGATTCTTGTAACACTAACACCAGAGAT  400

seq1  CTACTCTAGATGGAAGTATATTTTGTTGAAAATGAAAACCAGGAAAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTAGATGGAAGTATATTTTGTTGAAAATGAAAACCAGGAAAGCAA  450

seq1  TTCTGGAATGGAAGGAGGAAAGAAAATGTGAGAGAAATATTGAGAGTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAATGGAAGGAGGAAAGAAAATGTGAGAGAAATATTGAGAGTTAT  500

seq1  ATAGCAAAAATTGCAGGTCAATAAGCTATTGAACTCCTCTGCTTCAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAAAATTGCAGGTCAATAAGCTATTGAACTCCTCTGCTTCAGGCA  550

seq1  TTTCCATAAGGAAGTTCTGGAAAGTTTTAATTGACAATTTTGGATGTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATAAGGAAGTTCTGGAAAGTTTTAATTGACAATTTTGGATGTCAA  600

seq1  TGTTACTATAAGAGGGCTGGAAGGCACAGCCATGTACACTATTCTAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTATAAGAGGGCTGGAAGGCACAGCCATGTACACTATTCTAGAGC  650

seq1  TGAAAATGTATCTCCTTAGATCTACATAGGAAGGATGTATCTAATTAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGTATCTCCTTAGATCTACATAGGAAGGATGTATCTAATTAGTG  700

seq1  TTTGAATTTTATATCAAGCAACTCAGTTCCCTCTTAAAGGGTCCAATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTTTATATCAAGCAACTCAGTTCCCTCTTAAAGGGTCCAATGTA  750

seq1  ATTAATTCTTATTAAATATTTTAGCTTACTTGTCAGTCAACTGCTTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTCTTATTAAATATTTTAGCTTACTTGTCAGTCAACTGCTTTTCA  800

seq1  ATATAAATGTGCTGTCATATTAGTAGCAATGGAATACACAGTTTCAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATGTGCTGTCATATTAGTAGCAATGGAATACACAGTTTCAAATT  850

seq1  TAGTTGAACATGGTTGAGTGATTAGGAGGCAACGTGTAAAGATACTGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGAACATGGTTGAGTGATTAGGAGGCAACGTGTAAAGATACTGAGT  900

seq1  GACTAATGCATCACTATATTTTTCCTCAGAGAATTTTGTGTAATAGAACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATGCATCACTATATTTTTCCTCAGAGAATTTTGTGTAATAGAACC  950

seq1  ACCTA-TTTTATTGTCTCATGTCAACCTACTGGCTATGACTGATAGCTAT  999
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTTTTATTGTCTCATGTCAACCTACTGGCTATGACTGATAGCTAT  1000

seq1  TAAATTGTTCTTTTTCCCCAGTTTGGTCTAGATTGCCGACATTTATAGCA  1049
      |||||||||| |||||||||||| ||||||||||| ||||| ||||||||
seq2  TAAATTGTTC-TTTTCCCCAGTTGGGTCTAGATTG-CGACA-TTATAGCA  1047

seq1  CAGCAAGTCACTAAGAGAAAAGGAACAATTGGCAGTTATTTGTCTATTTA  1099
      |||| |||||||||||||||    |||  || ||||||||||||||||  
seq2  CAGC-AGTCACTAAGAGAAA---GACA--TGCCAGTTATTTGTCTATT--  1089

seq1  AGTCTTCTCCATAGTTAAGCATCATTTAACATC  1132
      |||||||| ||||  |||||||||||| |||||
seq2  AGTCTTCT-CATAAGTAAGCATCATTT-ACATC  1120


seq1: chr5_49534696_49535879
seq2: B6Ng01-222O04.g_64_1277 (reverse)

seq1  CATTAAT-CTC--ACTGGATCACTAAAATTAGATGAAA-CATT-CAGTG-  44
      ||||||| |||   ||| ||||| ||||| |||||||| |||| ||||| 
seq2  CATTAATCCTCCACCTGAATCAC-AAAATGAGATGAAAGCATTCCAGTGA  49

seq1  AATAA---ACACTTTAA-TCT---ACATCTTTTTAGCTT-CTTTGTATGA  86
      |||||   || |||||| |||   ||||| |||   ||| ||||||||||
seq2  AATAAAACACCCTTTAATTCTTACACATCCTTTAGCCTTCCTTTGTATGA  99

seq1  TCATAGGCTTGGAGTCAGGAGGT--CA-CAGTAT--ACATTAGAA--CTT  129
      ||||| || | ||||||| ||||  || ||||||   ||||||||  |||
seq2  TCATAAGCCTTGAGTCAGAAGGTTCCACCAGTATTACCATTAGAAACCTT  149

seq1  -AATCAT-CTATTTTAATAGAATTTGA-TCCAGTAG-AATGATA-CAGC-  173
       |||||| |||||||||||||| |||| |||||||| ||||||| |||| 
seq2  AAATCATCCTATTTTAATAGAAATTGATTCCAGTAGAAATGATACCAGCA  199

seq1  AGTGT-AAAATGCGTATAGATAGCCTAAAGATTGAATTTAATCCC-AGAA  221
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGTGTAAAAATGCGTATAGATAGCCTAAAGATTGAATTTAATCCCAAGAA  249

seq1  ATCATATCGTGGAAGGAAAGAACTGATATCCACAAGATTTTCTCTGACT-  270
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  ATCATATCGTGAAAGGAAAGAACTGATATCCACAAGATTTTCTCTGACTG  299

seq1  GCCATATATGCTACCTATGCACATGTTGATGTATGTACC-TTCATTGTCC  319
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCCATATATGCTACCTATGCACATGTTGATGTATGTACCTTTCATTGTCC  349

seq1  CTTTTTATCAACTGTAAAACTGGGGTATTAACATCTCAGTAAATACATCT  369
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATCAACTGTAAAACTGGGGTATTAACATCTCAGTAAATACATCT  399

seq1  ATTTGTGACAATATGGATAGAATGCAAGACTCTAGGTAAGACTACAGCTC  419
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGACAATATGGATAGAATGCAAGACTCTAGGTAAGACTACAGCTC  449

seq1  ATAACTATTACTAATAAATGATAAAATTATGAACACAGCAATTACTTATA  469
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTATTACTAATAAATGATAAAATTATGAACACAGCAATTACTTATA  499

seq1  TTTTGATTTATAATGTTAGAGTGGAACTAAAGCCTAGAGGTTTAAAAAAG  519
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTTATAATGTTAGAGTGGAACTAAAGCCTAGAGGTTTAAAAAAG  549

seq1  TCAAATTGTATCACATTGATAGTGAGAAGTCCAAGTTTGCTGAACCTGGG  569
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTGTATCACATTGATAGTGAGAAGTCCAAGTTTGCTGAACCTGGG  599

seq1  CAACTGCAAGTAACTTTTAGTTCATTTCTTGTGTCTGAGTCTCTTTGTAG  619
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCAAGTAACTTTTAGTTCATTTCTTGTGTCTGAGTCTCTTTGTAG  649

seq1  TAGGCAGTGATAACTGCCTTCTCCATGAATACACGGACAGATGCATGGAT  669
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGTGATAACTGCCTTCTCCATGAATACACGGACAGATGCATGGAT  699

seq1  ACTTTTATACTACAGAGTTATCAGTCAGAATACTAAAAGAAAGTTCGCAT  719
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATACTACAGAGTTATCAGTCAGAATACTAAAAGAAAGTTCGCAT  749

seq1  CTGATCCTTGAGGAGTTCAGAGAATCATAATTGCTATAAGAAGGGCCCAA  769
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCTTGAGGAGTTCAGAGAATCATAATTGCTATAAGAAGGGCCCAA  799

seq1  GAGAATGCCTTCTTAGTGGAGGAGATTAGGCAAGGCTCTCTGGGAGTGTC  819
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGCCTTCTTAGTGGAGGAGATTAGGCAAGGCTCTCTGGGAGTGTC  849

seq1  ACCTCACCAAAATGTGGATATAACAAGAAATGAAGAAAGAAAAGGGGTAA  869
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACCAAAATGTGGATATAACAAGAAATGAAGAAAGAAAAGGGGTAA  899

seq1  TGCTAGACATAGTTATAAAATGAACAGAATAATAATCTTATTCTTCTAAT  919
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGACATAGTTATAAAATGAACAGAATAATAATCTTATTCTTCTAAT  949

seq1  GAGAAACCACAAACATGATGAAATCTCTCTGTGTCTGTCTCTGTTTCTCT  969
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCACAAACATGATGAAATCTCTCTGTGTCTGTCTCTGTTTCTCT  999

seq1  CTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCT  1019
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCT  1049

seq1  GTCTCTCTCTCTCTTTCTCTCTGTGTGTACTCCATTATTAATTTATGACA  1069
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTCTCTCTTTCTCTCTGTGTGTACTCCATTATTAATTTATGACA  1099

seq1  TTAAGGAGTTCCCATTCCACATACAAACAACATCTAAGTTTGCAGAAACA  1119
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAGTTCCCATTCCACATACAAACAACATCTAAGTTTGCAGAAACA  1149

seq1  GCTTAAGCTCCACAATTCAGTCCCATGTGGAAGCCATTTTAATTCTTTTC  1169
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGCTCCACAATTCAGTCCCATGTGGAAGCCATTTTAATTCTTTTC  1199

seq1  ACTTTTATAGAATTC  1184
      |||||||||||||||
seq2  ACTTTTATAGAATTC  1214


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