BAC Information

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BAC

Clone NameB6Ng01-223A04
Chromosome5 (Build37)
Map Location 89,653,169 - 89,654,057
singlet/doubletsinglet
Overlap geneSlc4a4
Upstream geneLOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1
Downstream geneGc, LOC622870, Npffr2, LOC631105, Adamts3, EG665733, Cox18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223A04.bB6Ng01-223A04.g
ACCGA037872GA037873
length500898
definitionB6Ng01-223A04.b B6Ng01-223A04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagccctgagccccattttttttctttcctttttttat
taggtatttagctcatttacatttccaatgctataccaaaagtcccccat
acccacccacccccactcccctacccgcccactccccctttttggccctg
gcgttcccctgttttggggcatataaagtttgcgtgtccaatgggcctct
ctttccagtgatggccgactaggccatcttttgatatatatgcagctaga
gtcaagagctccagggtactggttagttcctaatgttgatccacctatag
ggttgcagatccctttagctccttgggtactttctctagctcctccattg
ggagccctgtgatccatccattagctgactgtgagcatccacttctgtgt
ttgctagaccccggcatagtctcacaagagacagctacatctgggtcctt
tcgataaaatcttgctagtgtatgcaatggtgtcagcgtttggatgctga

gaattcatttgaactccttcaaaacagcccttgctttcatttattacatt
tatattaacttggttttaaagtcagatagatctgggcaaatggccagacc
ccccaaaagcaaagctaagctactttactattcctgggtttggtccagta
gaagggttcttccacaccggaatatttgttatgaaacacaaagtgcttct
tcatgggctgcgtgggtgactgagggttttttcagtttgttttttgtttg
tttgtttgtttgtttgtttgttttgtttgctgttgttgttgtttggtttg
gtttggtttgccatccaagtaatttaggaagtacaactttgtaaaatatt
ttatttttccctgccgtttatgaatacttattctcccagatgggaaaata
tgagcattagatgcctaggactaacagttattaatttttgtttgccctta
aggatccagtcaaaaaccagaggtttgtgttgggtgtcccagggacctga
tcaatgtctagaggtgaatacctgtctataaagagaacaaaagagccaat
caccccataataattgtagggacagctaatgaactgtgttgctccttaag
tattattgtcccaaacacctttttcaattttttttatttttctcttcatt
cttttctcttttagaccctttttgacaagattggtttagcaaggaaaaaa
aaaaaaaaagaaatctaatctttatagataagaatatattctaaagggag
aacaaaaactatcatatagggcagaggctcccagagaaggttatgataaa
gtcgcttacttttccttaatttcttatattagtcagctcagcatcctgtc
tatgcagcgtcttctctctgaaggccccttggatgaggtactgagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_89653169_89654057
seq2: B6Ng01-223A04.g_66_963

seq1  GAATTCATTTGAACTCCTTCAAAACAGCCCTTGCTTTCATTTATTACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGAACTCCTTCAAAACAGCCCTTGCTTTCATTTATTACATT  50

seq1  TATATTAACTTGGTTTTAAAGTCAGATAGATCTGGGCAAATGGCCAGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAACTTGGTTTTAAAGTCAGATAGATCTGGGCAAATGGCCAGACC  100

seq1  CCCCAAAAGCAAAGCTAAGCTACTTTACTATTCCTGGGTTTGGTCCAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAAGCAAAGCTAAGCTACTTTACTATTCCTGGGTTTGGTCCAGTA  150

seq1  GAAGGGTTCTTCCACACCGGAATATTTGTTATGAAACACAAAGTGCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTTCTTCCACACCGGAATATTTGTTATGAAACACAAAGTGCTTCT  200

seq1  TCATGGGCTGCGTGGGTGACTGAGGGTTTTTTCAGTTTGTTTTTTGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGCTGCGTGGGTGACTGAGGGTTTTTTCAGTTTGTTTTTTGTTTG  250

seq1  TTTGTTTGTTTGTTTGTTTGTTTTGTTTGCTGTTGTTGTTGTTTGGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTGTTTGTTTTGTTTGCTGTTGTTGTTGTTTGGTTTG  300

seq1  GTTTGGTTTGCCATCCAAGTAATTTAGGAAGTACAACTTTGTAAAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTTTGCCATCCAAGTAATTTAGGAAGTACAACTTTGTAAAATATT  350

seq1  TTATTTTTCCCTGCCGTTTATGAATACTTATTCTCCCAGATGGGAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCCCTGCCGTTTATGAATACTTATTCTCCCAGATGGGAAAATA  400

seq1  TGAGCATTAGATGCCTAGGACTAACAGTTATTAATTTTTGTTTGCCCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTAGATGCCTAGGACTAACAGTTATTAATTTTTGTTTGCCCTTA  450

seq1  AGGATCCAGTCAAAAACCAGAGGTTTGTGTTGGGTGTCCCAGGGACCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCAGTCAAAAACCAGAGGTTTGTGTTGGGTGTCCCAGGGACCTGA  500

seq1  TCAATGTCTAGAGGTGAATACCTGTCTATAAAGAGAACAAAAGAGCCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTCTAGAGGTGAATACCTGTCTATAAAGAGAACAAAAGAGCCAAT  550

seq1  CACCCCATAATAATTGTAGGGACAGCTAATGAACTGTGTTGCTCCTTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCATAATAATTGTAGGGACAGCTAATGAACTGTGTTGCTCCTTAAG  600

seq1  TATTATTGTCCCAAACACC-TTTTCAATTTTTTTTATTTTTCTCTTCATT  649
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATTATTGTCCCAAACACCTTTTTCAATTTTTTTTATTTTTCTCTTCATT  650

seq1  C-TTTCTCTTTTAGACCC-TTTTGACAAGATTGGTTTAGCAAGG-AAAAA  696
      | |||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  CTTTTCTCTTTTAGACCCTTTTTGACAAGATTGGTTTAGCAAGGAAAAAA  700

seq1  AAAAAAAAAGAAATCTAATCTTTATAGATAAGAATATATTCTAAAGGGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGAAATCTAATCTTTATAGATAAGAATATATTCTAAAGGGAG  750

seq1  AACAAAAACTATCATATA-GGCAGAGGCT-CCAGAGAAGGTTATGATAAA  794
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  AACAAAAACTATCATATAGGGCAGAGGCTCCCAGAGAAGGTTATGATAAA  800

seq1  GTCGCTTACTTTTCCTTAA-TTCTTATAATTAGTCAGCTCAGCAT-CTGT  842
      ||||||||||||||||||| ||||||| ||||||||||||||||| ||||
seq2  GTCGCTTACTTTTCCTTAATTTCTTAT-ATTAGTCAGCTCAGCATCCTGT  849

seq1  CTATGCAGCGTC-TCCCTCTGAAGGCCCC-TGGATGAGGTACTGAGCAT  889
      |||||||||||| || ||||||||||||| |||||||||||||||||||
seq2  CTATGCAGCGTCTTCTCTCTGAAGGCCCCTTGGATGAGGTACTGAGCAT  898