BAC Information

Click to search

BAC

Clone NameB6Ng01-224E20
Chromosome5 (Build37)
Map Location 57,803,971 - 57,804,622
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041335, LOC100041349, LOC666455
Downstream geneLOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224E20.bB6Ng01-224E20.g
ACCGA038799GA038800
length8311,018
definitionB6Ng01-224E20.b B6Ng01-224E20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctacctgccagtgaaatatactgtttctagtgatccttccaattc
ttgtagggttttgcagcatagagagctaaggatactgtgaaagaagttgt
ccaatttttacaatatacaatggaaactattaaacaaaaggctcacacct
gttgtacaaaatgatttcatttatactaagttaagtgagtgaagataatt
taaaaactctaatttcgttattattaattgtgtctcttgagtgaacatag
gtttggtttagtagtgtgtcctggaaaatgatagacttctcaggggcaga
caactgaagaaaatgactacccttcctcttgaatccaggattaggcagta
ttttagcagggaggtgtgtggccctatacgtacctctctgagtcttgatt
gatcattaataggccctctgttggttcattctgtaataactgtcatgaag
tcatgattgtgctgctgtgacataaccagaagatgactgttcacagcctt
tatcttagggcctttacattcttttttttttttttttttttttttttttt
ttgccctttacagtgtcccctgcatcacagtgtttttaaaggatgaatta
tcaactatcacttgttctcagcaccttgagcagacatgtatggttgcact
caattctttttgtttcataaaaggcatctctgcttaaacctgggagttac
acttgtcagtgagtgtatatgtttaaaagacaacttggtcatattatatt
ctgtttaaaaacagtactaagattaactctagggtttataatttccctca
accattctttttaaatcatggttacacttcc

gaattcatatgataagtactcactgataagtggatattaggccagaaact
tagaatacccaagatacaagatacaatctgcaaaacacatgaaactcaag
aataacgaagaccaaagtgtggacactttgtctcttcttagaattcggaa
caaaacacccatggaaggagttacagagacaaaatttggagctgagagga
aaggatggaccatctagagactgccatgcccagggatccattccataatc
agcctccaaaagctgacaccattgcatacacaagcaaggtatgagggact
tttgggatagcattggaaatgtaaatgaagaaaatatctaataaaaaaaa
gaaaaaaaactgcgtggtattgatacagtgacaggcaggaatggagtaat
tcaatggaaaagacttgaagtcccagaaatgaacccatacatctatagtc
agttgaacaaaggagctaaaatcatccagtgggaaaaaagacagtatttt
caagaaatggtgccggttcaactggcagatagcatgtataagaatgcaag
tagatcaattcatatctccttgtagaaagttcaagtccaagtggatcaag
gacctccacaaaaaaaaacagatacgctgaaaataatagataataaagtg
gggaagagccatgagcaaatgggcacagaggaaaattccctgaacagaac
accaatatcttatgttctaagatcaagaatttataaatgagacatcataa
aattgcaaagcttctattaggcaaaggatactgtcaataggataaaacat
caaccaacagattgggaaaagatctttacctatcctatatctgacagagg
gataatatccaaaaatatacaggaaagtcaaaaagttagactccagagaa
ccaaataaacctattaaaaatggggtacagagctaaataaagaattctca
actgaggaataggtgaatggggtgagacgcaccttaaaaatgttaagcat
cattagtcatgagggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57803971_57804622
seq2: B6Ng01-224E20.b_48_699 (reverse)

seq1  TGAGTGCAACCATACATGTCTGCTCAAGGTGCTGAGAACAAGTGATAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCAACCATACATGTCTGCTCAAGGTGCTGAGAACAAGTGATAGTT  50

seq1  GATAATTCATCCTTTAAAAACACTGTGATGCAGGGGACACTGTAAAAGGC  100
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GATAATTCATCCTTTAAAAACACTGTGATGCAGGGGACACTGTAAAGGGC  100

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATGTAAAGGCCCTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATGTAAAGGCCCTAAGA  150

seq1  TAAAGGCTGTGAACAGTCATCTTCTGGTTATGTCACAGCAGCACAATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCTGTGAACAGTCATCTTCTGGTTATGTCACAGCAGCACAATCAT  200

seq1  GACTTCATGACAGTTATTACAGAATGAACCAACAGAGGGCCTATTAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCATGACAGTTATTACAGAATGAACCAACAGAGGGCCTATTAATGA  250

seq1  TCAATCAAGACTCAGAGAGGTACGTATAGGGCCACACACCTCCCTGCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAAGACTCAGAGAGGTACGTATAGGGCCACACACCTCCCTGCTAA  300

seq1  AATACTGCCTAATCCTGGATTCAAGAGGAAGGGTAGTCATTTTCTTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGCCTAATCCTGGATTCAAGAGGAAGGGTAGTCATTTTCTTCAGT  350

seq1  TGTCTGCCCCTGAGAAGTCTATCATTTTCCAGGACACACTACTAAACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCCCTGAGAAGTCTATCATTTTCCAGGACACACTACTAAACCAA  400

seq1  ACCTATGTTCACTCAAGAGACACAATTAATAATAACGAAATTAGAGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGTTCACTCAAGAGACACAATTAATAATAACGAAATTAGAGTTTT  450

seq1  TAAATTATCTTCACTCACTTAACTTAGTATAAATGAAATCATTTTGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATCTTCACTCACTTAACTTAGTATAAATGAAATCATTTTGTACA  500

seq1  ACAGGTGTGAGCCTTTTGTTTAATAGTTTCCATTGTATATTGTAAAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGTGAGCCTTTTGTTTAATAGTTTCCATTGTATATTGTAAAAATT  550

seq1  GGACAACTTCTTTCACAGTATCCTTAGCTCTCTATGCTGCAAAACCCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACTTCTTTCACAGTATCCTTAGCTCTCTATGCTGCAAAACCCTAC  600

seq1  AAGAATTGGAAGGATCACTAGAAACAGTATATTTCACTGGCAGGTAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTGGAAGGATCACTAGAAACAGTATATTTCACTGGCAGGTAGAAT  650

seq1  TC  652
      ||
seq2  TC  652


| Home | SequenceCutter | Blast | Download |