BAC Information

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BAC

Clone NameB6Ng01-224N15
Chromosome5 (Build37)
Map Location 46,576,161 - 46,734,532
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224N15.bB6Ng01-224N15.g
ACCGA039197GA039198
length4691,083
definitionB6Ng01-224N15.b B6Ng01-224N15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,734,058 - 46,734,532)(46,576,161 - 46,577,243)
sequence
ttgagtgtgtaaactagtggggtcttcatttcttgtcttgtctcttggac
tctttttctgtgtttacatattttgtccaacgcaatgtgttagttttaat
tttatctgattatattttattttattattattccttagaagccttgtgtt
tcctaatgaaagacttaaagggagtgatacagatttgggggatgggatgg
ataaggggagaaattgaaaggggaaaccataataaggatatattagatga
gaaaaaagtctatttttgaataaaaggaataaaatgaaataaaatgccat
gcagacatgcctgcaagctaaaatgatggagaaaattcttcaatttatag
tccctttcccaggtctgtctatatttgggtcatgttttcaaaaattaact
agcatggttgttataggaaataggccttgggctgtacatgtgtattgagg
gaggtgtcagaaagatgtg
gaattccttgctttgagcactgtcccttacataacaccctccatgggaat
ccttcatctagaactgttggagctgtgttcttcagtgtgtggtgtgggac
agtctatgacaatttgagatgtctgggcatagtgatgctgatattgctgg
gagactaccaggtggacagtcatttgcctcactggtaccattttcattgg
ttgcacaaagtagacttcttcctggaacttgatgtgtgctccttggttgc
tgtttcaaaggtcatgacagctggttctctttaaagcactggggttctgt
gtcctacacaatcttaggatgtctgaaatggcaccaactttctcagatcc
tatgaactaaggtggaactgtaaacacattcagtgactaaatactgtctt
tctatggttttgaagtaagaaaaagggttattcactagttaaaggtttta
ggctgaataagaaatttctacacagataggtaaaaataaaataaaataaa
ataaaataaaataaaataaaataaaacaaaatggacaagtataggcaatt
tttttaatggttcaattttatagcaggagtttcgacccagggtaaaaatg
atgtcttggttataaagctaccatcatttgcaatttccactcagccacat
ggatccaattttaaaagtgttttagggctggtgagatcgtcctgtagctg
aatgcagactacccaagtgtgaagtcctgaggttgaagtctcagaaccca
tatcaagagagacatggaagcatgcacatgtgacgtcagcagtgccacag
tgagaggaacaggacaatctctggaagtccatgggccagctagcctcgag
ttcacaacattgaacaaaaagacccatctcaatgaaagtggcaagtgaga
agcaagcccaagaatgtcctttgagctccatacatgctgccacagcaagc
actcacttctcacaaacacacacacgtagaagaagcattgttacatagaa
acagagtgatgcttttaatctagatttttattattatataatcgttgaat
caggaaatagattaatcattgtatattcaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_46734058_46734532
seq2: B6Ng01-224N15.b_49_523 (reverse)

seq1  CACATCTTTCTGACACCTCCCTCAATACACATGTGCAGCCCAAGGCCTAT  50
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CACATCTTTCTGACACCTCCCTCAATACACATGTACAGCCCAAGGCCTAT  50

seq1  TTCCTATAACAACCATGCTAGTTAATTTTTGAAAACATGACCCAAATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATAACAACCATGCTAGTTAATTTTTGAAAACATGACCCAAATATA  100

seq1  GACAGACCTGGGAAAGGGACTATAAATTGAAGAATTTTCTCCATCATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACCTGGGAAAGGGACTATAAATTGAAGAATTTTCTCCATCATTTT  150

seq1  AGCTTGCAGGCATGTCTGCATGGCATTTTATTTCATTTTATTCCTTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCAGGCATGTCTGCATGGCATTTTATTTCATTTTATTCCTTTTAT  200

seq1  TCAAAAATAGACTTTTTTCTCATCTAATATATCCTTATTATGGTTTCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATAGACTTTTTTCTCATCTAATATATCCTTATTATGGTTTCCCC  250

seq1  TTTCAATTTCTCCCCTTATCCATCCCATCCCCCAAATCTGTATCACTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTTCTCCCCTTATCCATCCCATCCCCCAAATCTGTATCACTCCC  300

seq1  TTTAAGTCTTTCATTAGGAAACACAAGGCTTCTAAGGAATAATAATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTCTTTCATTAGGAAACACAAGGCTTCTAAGGAATAATAATAAAA  350

seq1  TAAAATATAATCAGATAAAATTAAAACTAACACATTGCGTTGGACAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATAATCAGATAAAATTAAAACTAACACATTGCGTTGGACAAAAT  400

seq1  ATGTAAACACAGAAAAAGAGTCCAAGAGACAAGACAAGAAATGAAGACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAACACAGAAAAAGAGTCCAAGAGACAAGACAAGAAATGAAGACCC  450

seq1  CACTAGTTTACACACTCAAGAATTC  475
      |||||||||||||||||||||||||
seq2  CACTAGTTTACACACTCAAGAATTC  475

seq1: chr5_46576161_46577243
seq2: B6Ng01-224N15.g_68_1150

seq1  GAATTCCTTGCTTTGAGCACTGTCCCTTACATAACACCCTCCATGGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCTTTGAGCACTGTCCCTTACATAACACCCTCCATGGGAAT  50

seq1  CCTTCATCTAGAACTGTTGGAGCTGTGTTCTTCAGTGTGTGGTGTGGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATCTAGAACTGTTGGAGCTGTGTTCTTCAGTGTGTGGTGTGGGAC  100

seq1  AGTCTATGACAATTTGAGATGTCTGGGCATAGTGATGCTGATATTGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATGACAATTTGAGATGTCTGGGCATAGTGATGCTGATATTGCTGG  150

seq1  GAGACTACCAGGTGGACAGTCATTTGCCTCACTGGTACCATTTTCATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTACCAGGTGGACAGTCATTTGCCTCACTGGTACCATTTTCATTGG  200

seq1  TTGCACAAAGTAGACTTCTTCCTGGAACTTGATGTGTGCTCCTTGGTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAAAGTAGACTTCTTCCTGGAACTTGATGTGTGCTCCTTGGTTGC  250

seq1  TGTTTCAAAGGTCATGACAGCTGGTTCTCTTTAAAGCACTGGGGTTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAAAGGTCATGACAGCTGGTTCTCTTTAAAGCACTGGGGTTCTGT  300

seq1  GTCCTACACAATCTTAGGATGTCTGAAATGGCACCAACTTTCTCAGATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTACACAATCTTAGGATGTCTGAAATGGCACCAACTTTCTCAGATCC  350

seq1  TATGAACTAAGGTGGAACTGTAAACACATTCAGTGACTAAATACTGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACTAAGGTGGAACTGTAAACACATTCAGTGACTAAATACTGTCTT  400

seq1  TCTATGGTTTTGAAGTAAGAAAAAGGGTTATTCACTAGTTAAAGGTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGTTTTGAAGTAAGAAAAAGGGTTATTCACTAGTTAAAGGTTTTA  450

seq1  GGCTGAATAAGAAATTTCTACACAGATAGGTAAAAATAAAATAAAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAATAAGAAATTTCTACACAGATAGGTAAAAATAAAATAAAATAAA  500

seq1  ATAAAATAAAATAAAATAAAATAAAACAAAATGGACAAGTATAGGCAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAAATAAAATAAAATAAAACAAAATGGACAAGTATAGGCAATT  550

seq1  TTTTTAATGGTTCAATTTTATAGCAGGAGTTTCGACCCAGGGTAAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATGGTTCAATTTTATAGCAGGAGTTTCGACCCAGGGTAAAAATG  600

seq1  ATGTCTTGGTTATAAAGCTACCATCATTTGCAATTTCCACTCAGCCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTGGTTATAAAGCTACCATCATTTGCAATTTCCACTCAGCCACAT  650

seq1  GGATCCAATTTTAAAAGTGTTTTAGGGCTGGTGAGATCGTCCTGTAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCAATTTTAAAAGTGTTTTAGGGCTGGTGAGATCGTCCTGTAGCTG  700

seq1  AATGCAGACTACCCAAGTGTGAAGTCCTGAGGTTGAAGTCTCAGAACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGACTACCCAAGTGTGAAGTCCTGAGGTTGAAGTCTCAGAACCCA  750

seq1  TATCAAGAGAGACATGGAAGCATGCACATGTGACGTCAGCAGTGCCACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGAGAGACATGGAAGCATGCACATGTGACGTCAGCAGTGCCACAG  800

seq1  TGAGAGGAACAGGACAATCTCTGGAAGTCCATGGGCCAGCTAGCCTCGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGAACAGGACAATCTCTGGAAGTCCATGGGCCAGCTAGCCTCGAG  850

seq1  TTCACAACATTGAACAAAAAGACCCATCTCAATGAAGGTGGCAAGTGAGA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCACAACATTGAACAAAAAGACCCATCTCAATGAAAGTGGCAAGTGAGA  900

seq1  AGCAAGCCCAAGAATGTCCTTTGAGCTCCATACATGCTGCCACAGCAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCCAAGAATGTCCTTTGAGCTCCATACATGCTGCCACAGCAAGC  950

seq1  ACTCAC-TCTCACAAACACACACACGTAG-AGAAGCAATG-TACATAGAA  997
      |||||| |||||||||||||||||||||| ||||||| || |||||||||
seq2  ACTCACTTCTCACAAACACACACACGTAGAAGAAGCATTGTTACATAGAA  1000

seq1  ACAGAGTGATGCTTTTAAATTCTTAGATTTTTATTATTATAT-ATCGTTG  1046
      ||||||||||||||||||  || ||||||||||||||||||| |||||||
seq2  ACAGAGTGATGCTTTTAA--TC-TAGATTTTTATTATTATATAATCGTTG  1047

seq1  AATTCAAGGAAATAGATAAATCATTG-GTATTCAAACA  1083
      |||   ||||||||||| ||||||||  ||||||||||
seq2  AAT--CAGGAAATAGATTAATCATTGTATATTCAAACA  1083