BAC Information

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BAC

Clone NameB6Ng01-224N17
Chromosome5 (Build37)
Map Location 84,695,974 - 84,836,775
singlet/doubletdoublet
Overlap geneEpha5
Upstream geneSrd5a2l2, LOC100039608, LOC231368, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224N17.bB6Ng01-224N17.g
ACCGA039201GA039202
length1,1901,124
definitionB6Ng01-224N17.b B6Ng01-224N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,835,569 - 84,836,775)(84,695,974 - 84,697,121)
sequence
gaattctccacaaaagaagatcaggagagggagcaggaagcccgggagtg
gagctgagtaaatgctctcagtcagtcattgtttgtgtgctgaattgagt
caggataaaagttaatattgtctggaagaacttccataaaagataaataa
cacaaaaactttcttcttcctccccctctccctctcttctcctccccctt
tcctactccttttcccctcctcctctttttcttctttatcttcttcttct
tcttctaagacttagcagaaacattgatcttggcaaccctttgaaagtgc
ctcatttgcatagatgcagtcattgtcactgagtgattgccttttgtttg
catcagtttcctaactatcttgcatgatagataagaatgaagagccttag
agaccatgacactacagctctgctatgtgttatgagagtatataaatcag
ccccttctgggtctacacagtgaacatgaatatgtcagggattattctta
gagttgctatgaaatgaaacaagagtgtacctatactgctgcatagaatt
gctacagtcccatcactaaataaccaatatgttattctttttcacacaac
atggtatatagggtatccaaggcattatttctcagtcacagctcatcatc
tttcttgaagtggaagatgaaaaaaatcttgagataggaaggcaatttaa
caaaaggaattgacaaaatgtcccatgtagctgtacaaactaagaaagaa
acacctgtgtcccaattttctgctgggttttgttatctaatgacagattt
ggtgattaggcaaggaatgaaggaaatgataagcagcattatcaggggta
taagtgttgtatctttaattttccacagaaaactgatgcttcttatcagc
tacacgaaacatcaagggttatctgcaagtattattgaacatttgccatc
atgttatagttttgggataattctgtatatgccctgatatgttacagatt
ttatattaaagtatgcatgtgtaaaccatagaatacacatagtgactttg
aatagaatgagagatcattaatactgtctcaatttgaaaattcatgcagt
aatgctttaaagtttcttgatacagaaattctgacactctgatccagact
aatacaggttcattacatttctagaacaccttctcttttt

gaattcaatttaattgaataattctaaataatattatttgtatggggatt
aaacttgctcagaaaggtattataaaattcaaattaaactttctataaaa
attgttttatttttagatatttttaaaatgcactaaaggagaacacttca
tattttttataaaagtactaaataatagttgtattattatatattagaaa
taagacacaacacagcattttactttggttagcatattagtatatttgta
acttttgataaatgtgttcagaaactttcacatctcctggaaaggctgga
tccatgtcagacacacagtgcattgaaacaataattgccccatcccatcc
ctttaaaacaacagataagcagtttatcactttgatctggtttcttcagt
tcactaacctgccttgctttgtgacaggcatcaaaatctcttataattgg
cttgttcactgtacggcaaggaaacctctgctcctaccaatgtcttggaa
gaaaatagctttcagttttaaaatatagagttataatgttgatctattac
acactcaggcatatttcattgattttttatacaaaatttaattatcttac
acactctcaaatactaatgcaatcattctttgagtaacaaattgtactgt
agtatttggaaacaaatattttatgaaacttttttaagcccttacattct
caataattttattaaagattgtattaaaataaattatatcagtgtatgga
tcactatcaaaaccaaccttaaaaatctatgaactaacatttactcacca
attttagccatctaaaaggcacacagttataatctttcaaaaagaaccaa
agaaaatatgaaacataaaattgtaggtctatatttcatatgtatcaagg
atataataaaaatattttgttagtgtctcagatttaaattatgcaaggac
tcaactggaagtaaaagataataatgatgtatgtctctggttttatgtat
cattatgtgacatgcataataatgtgtactttacaggtgtacatgatcac
aagcccattaaattctttattgggaggtatttaatcaattcattttattg
gtccaaacattgacttaaggacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84835569_84836775
seq2: B6Ng01-224N17.b_49_1238 (reverse)

seq1  AAAAAGAGAA-GTGTTCTGGGAAATGTAAATGGAAAACTGTATTTAGTAC  49
      |||||||||| |||||||  ||||||| ||||  || ||||| ||||| |
seq2  AAAAAGAGAAGGTGTTCT-AGAAATGT-AATG--AACCTGTA-TTAGT-C  44

seq1  TGGAATCAGGAGTGTCAG-ATATCTGTATCAAGAAACTTT-AAGCATTTT  97
      ||| |||| ||||||||| || |||||||||||||||||| |||||||  
seq2  TGG-ATCA-GAGTGTCAGAATTTCTGTATCAAGAAACTTTAAAGCATT--  90

seq1  CCCTGCCATGGATTTTCAAAATTGAGAACCAGTTAATTTAATGATCTTCT  147
        ||| |||| |||||| |||||||||  ||||    ||||||||| |||
seq2  -ACTG-CATGAATTTTC-AAATTGAGA--CAGT---ATTAATGATC-TCT  131

seq1  CATTCTATTCAAAGTCACTATGTGTATTCTAATGGTTTACACATGCATAC  197
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATTCTATTCAAAGTCACTATGTGTATTCT-ATGGTTTACACATGCATAC  180

seq1  TTTAATATAAAATCTGTAACATATCAGGGCATATACAAGAATTATCCCAA  247
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTAATATAAAATCTGTAACATATCAGGGCATATAC-AGAATTATCCCAA  229

seq1  AACTATAACATGATGGCAAATGTTCAAT-ATACTTGCAGATAACCCTTGA  296
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AACTATAACATGATGGCAAATGTTCAATAATACTTGCAGATAACCCTTGA  279

seq1  TGTTTCGTGTAGCTGATAAGAAGCATCAGTTTTCTGTGGAAAATTAAAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCGTGTAGCTGATAAGAAGCATCAGTTTTCTGTGGAAAATTAAAGA  329

seq1  TACAACACTTATACCCCTGATAATGCTGCTTATCATTTCCTTCATTCCTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACACTTATACCCCTGATAATGCTGCTTATCATTTCCTTCATTCCTT  379

seq1  GCCTAATCACCAAATCTGTCATTAGATAACAAAACCCAGCAGAAAATTGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATCACCAAATCTGTCATTAGATAACAAAACCCAGCAGAAAATTGG  429

seq1  GACACAGGTGTTTCTTTCTTAGTTTGTACAGCTACATGGGACATTTTGTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGGTGTTTCTTTCTTAGTTTGTACAGCTACATGGGACATTTTGTC  479

seq1  AATTCCTTTTGTTAAATTGCCTTCCTATCTCAAGATTTTTTTCATCTTCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTTTTGTTAAATTGCCTTCCTATCTCAAGATTTTTTTCATCTTCC  529

seq1  ACTTCAAGAAAGATGATGAGCTGTGACTGAGAAATAATGCCTTGGATACC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAGAAAGATGATGAGCTGTGACTGAGAAATAATGCCTTGGATACC  579

seq1  CTATATACCATGTTGTGTGAAAAAGAATAACATATTGGTTATTTAGTGAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATACCATGTTGTGTGAAAAAGAATAACATATTGGTTATTTAGTGAT  629

seq1  GGGACTGTAGCAATTCTATGCAGCAGTATAGGTACACTCTTGTTTCATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGTAGCAATTCTATGCAGCAGTATAGGTACACTCTTGTTTCATTT  679

seq1  CATAGCAACTCTAAGAATAATCCCTGACATATTCATGTTCACTGTGTAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAACTCTAAGAATAATCCCTGACATATTCATGTTCACTGTGTAGA  729

seq1  CCCAGAAGGGGCTGATTTATATACTCTCATAACACATAGCAGAGCTGTAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGGGGCTGATTTATATACTCTCATAACACATAGCAGAGCTGTAG  779

seq1  TGTCATGGTCTCTAAGGCTCTTCATTCTTATCTATCATGCAAGATAGTTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGGTCTCTAAGGCTCTTCATTCTTATCTATCATGCAAGATAGTTA  829

seq1  GGAAACTGATGCAAACAAAAGGCAATCACTCAGTGACAATGACTGCATCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTGATGCAAACAAAAGGCAATCACTCAGTGACAATGACTGCATCT  879

seq1  ATGCAAATGAGGCACTTTCAAAGGGTTGCCAAGATCAATGTTTCTGCTAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATGAGGCACTTTCAAAGGGTTGCCAAGATCAATGTTTCTGCTAA  929

seq1  GTCTTAGAAGAAGAAGAAGAAGATAAAGAAGAAAAAGAGGAGGAGGGGAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGAAGAAGAAGAAGAAGATAAAGAAGAAAAAGAGGAGGAGGGGAA  979

seq1  AAGGAGTAGGAAAGGGGGAGGAGAAGAGAGGGAGAGGGGGAGGAAGAAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTAGGAAAGGGGGAGGAGAAGAGAGGGAGAGGGGGAGGAAGAAGA  1029

seq1  AAGTTTTTGTGTTATTTATCTTTTATGGAAGTTCTTCCAGACAATATTAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTGTGTTATTTATCTTTTATGGAAGTTCTTCCAGACAATATTAA  1079

seq1  CTTTTATCCTGACTCAATTCAGCACACAAACAATGACTGACTGAGAGCAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCCTGACTCAATTCAGCACACAAACAATGACTGACTGAGAGCAT  1129

seq1  TTACTCAGCTCCACTCCCGGGCTTCCTGCTCCCTCTCCTGATCTTCTTTT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAGCTCCACTCCCGGGCTTCCTGCTCCCTCTCCTGATCTTCTTTT  1179

seq1  GTGGAGAATTC  1207
      |||||||||||
seq2  GTGGAGAATTC  1190


seq1: chr5_84695974_84697121
seq2: B6Ng01-224N17.g_69_1192

seq1  GAATTCAATTTAATTGAATAATTCTAAATAATATTATTTGTATGGGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTAATTGAATAATTCTAAATAATATTATTTGTATGGGGATT  50

seq1  AAACTTGCTCAGAAAGGTATTATAAAATTCAAATTAAACTTTCTATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGCTCAGAAAGGTATTATAAAATTCAAATTAAACTTTCTATAAAA  100

seq1  ATTGTTTTATTTTTAGATATTTTTAAAATGCACTAAAGGAGAACACTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTATTTTTAGATATTTTTAAAATGCACTAAAGGAGAACACTTCA  150

seq1  TATTTTTTATAAAAGTACTAAATAATAGTTGTATTATTATATATTAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTATAAAAGTACTAAATAATAGTTGTATTATTATATATTAGAAA  200

seq1  TAAGACACAACACAGCATTTTACTTTGGTTAGCATATTAGTATATTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACACAACACAGCATTTTACTTTGGTTAGCATATTAGTATATTTGTA  250

seq1  ACTTTTGATAAATGTGTTCAGAAACTTTCACATCTCCTGGAAAGGCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGATAAATGTGTTCAGAAACTTTCACATCTCCTGGAAAGGCTGGA  300

seq1  TCCATGTCAGACACACAGTGCATTGAAACAATAATTGCCCCATCCCATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTCAGACACACAGTGCATTGAAACAATAATTGCCCCATCCCATCC  350

seq1  CTTTAAAACAACAGATAAGCAGTTTATCACTTTGATCTGGTTTCTTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAACAACAGATAAGCAGTTTATCACTTTGATCTGGTTTCTTCAGT  400

seq1  TCACTAACCTGCCTTGCTTTGTGACAGGCATCAAAATCTCTTATAATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAACCTGCCTTGCTTTGTGACAGGCATCAAAATCTCTTATAATTGG  450

seq1  CTTGTTCACTGTACGGCAAGGAAACCTCTGCTCCTACCAATGTCTTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCACTGTACGGCAAGGAAACCTCTGCTCCTACCAATGTCTTGGAA  500

seq1  GAAAATAGCTTTCAGTTTTAAAATATAGAGTTATAATGTTGATCTATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGCTTTCAGTTTTAAAATATAGAGTTATAATGTTGATCTATTAC  550

seq1  ACACTCAGGCATATTTCATTGATTTTTTATACAAAATTTAATTATCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGGCATATTTCATTGATTTTTTATACAAAATTTAATTATCTTAC  600

seq1  ACACTCTCAAATACTAATGCAATCATTCTTTGAGTAACAAATTGTACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTCAAATACTAATGCAATCATTCTTTGAGTAACAAATTGTACTGT  650

seq1  AGTATTTGGAAACAAATATTTTATGAAACTTTTTTAAGCCCTTACATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGGAAACAAATATTTTATGAAACTTTTTTAAGCCCTTACATTCT  700

seq1  CAATAATTTTATTAAAGATTGTATTAAAATAAATTATATCAGTGTATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATTTTATTAAAGATTGTATTAAAATAAATTATATCAGTGTATGGA  750

seq1  TCACTATCAAAACCAACCTTAAAAATCTATGAACTAACATTTACTCACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATCAAAACCAACCTTAAAAATCTATGAACTAACATTTACTCACCA  800

seq1  ATTTTAGCCATCTAAAAGGCACACAGTTATAATCTTTCAAAAAGAACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGCCATCTAAAAGGCACACAGTTATAATCTTTCAAAAAGAACCAA  850

seq1  AGAAAATATGAAACATAAAATTGTAGGTCTATATTTCATATGTATCAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATATGAAACATAAAATTGTAGGTCTATATTTCATATGTATCAAGG  900

seq1  ATATAATAAAAATATTTTGTTAGTGTCTCAGGATTAAAATTATGCAAGGG  950
      |||||||||||||||||||||||||||||| |||| ||||||||||| ||
seq2  ATATAATAAAAATATTTTGTTAGTGTCTCA-GATTTAAATTATGCAA-GG  948

seq1  ACTCAACTGGAAGTAAAAAGAATAATTAATGATGTATGTTCTCTGGTTTT  1000
      ||||||||||||||||||   |||| |||||||||||| |||||||||||
seq2  ACTCAACTGGAAGTAAAA--GATAA-TAATGATGTATG-TCTCTGGTTTT  994

seq1  ATGTATCCAATTTATTGTGACATGCATAAT-ATGTGTACCTTTTACAAGG  1049
      |||||||  |||   ||||||||||||||| ||||||||  ||||||  |
seq2  ATGTATC--ATT--ATGTGACATGCATAATAATGTGTAC--TTTACA--G  1036

seq1  GTGTTACCATGATCACAGCCCAATTTAAAATCCTTTAAATGGGAGGTAAA  1099
      ||||   ||||||||||  || |||  |||| |||| | |||||||| | 
seq2  GTGT--ACATGATCACAAGCCCATT--AAATTCTTT-ATTGGGAGGT-AT  1080

seq1  TTAATCATTTTCATTTTTAATTGGGTCAAACTATGACTTAAAGGGACGA  1148
      |||||||  ||||||||  |||||  |||||  ||||||||  ||||||
seq2  TTAATCA-ATTCATTTT--ATTGGTCCAAACATTGACTTAA--GGACGA  1124


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