BAC Information

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BAC

Clone NameB6Ng01-225F03
Chromosome5 (Build37)
Map Location 58,228,651 - 58,345,315
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225F03.bB6Ng01-225F03.g
ACCGA039547GA039548
length1,201965
definitionB6Ng01-225F03.b B6Ng01-225F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,344,102 - 58,345,315)(58,228,651 - 58,229,613)
sequence
gaattccacgaacaaataattttacatctcttctgtaatctctgaagaga
acagatttagaaaaaactagaggcctaaagagtatattaataatctgttc
aaacaagcataaaacaattttttaatatcaatgatcactgcaatttgcag
gaaagtgaaagaatcaaatccatgttctacataattagccattaacttaa
aatagatcatatagttatggttgtgaaaataaagattatttaattaatat
gtttgcatgatttgattgatacaaaactaatttatctcccagttttaagt
tagaattggctgacatagacataatatattcatcaaagaatatacttaaa
tttcattattctatgtaaattgtatacacttaaaataaaaatgattatat
tttaaaaactactgataacaaaagaaattttgaaaatcatgtttgatata
aaacaactaaaatgaaaaattagtgaactgaacataataagatgtgaact
aattaatataggtatgtgtcttacagatttaaaatcaggatccaagcctt
tgtaggaaaaatagcataaatatgagttaaagtaaaataaacactcaaac
aaaataattaccacagccaatcaaaatataaagctgtggaagacagttcc
aactgatggatctacaaaacaacttctgctaagcctcagagaatattgaa
aaacaggaggcagaaaggttgcaagatccagaggatctgagagtttgctg
caagagtttttaataccaccagattccaaaacaaacaggaaactcaaaag
ttttaagccaaatacataggtttaatcattagatgtattattttgaatga
agtagactcatgtcccaaacacaattagttaacagtcacttagttttgtg
gtccatgagggactcaatagtaccccaggacttgaacaatgcctgtcctt
tctgttcttgccatgaaattagttgctatgttcctgtcctgtcaagtaca
gatacatgaaaattgtaggacaaggtgtggcttacttggactgtgctggt
atcatatgtttctacagatgtttactcctgtgtagcctagcagctctttc
attctcaaagtagaagaacaactgacaaaatatccaaataaaacataatt
ggaattccaggatgttgcctaacgttagaatgtaaatatatttcatgaat
t

gaattcttttctgcagcattccagaaataattgcctaccgtttaatctag
aaacagattagaccataaaaaaaaagtcagactgcagaacctaagaagtt
gatggtccatagatatgaacacaaaaccaaaggtggaaaagagcatttaa
gaacatttgcaaataaagttgcttaaaacacagctgaactttggtggaga
gatgatcttctgttgtggtggttttgtctttcagttacagttttcttcct
ggaggaaggttgcaagggcagaggacaaatgtggaggaatgggcagatga
gttggatcggggtgactgatgtgaaattcagaaagatcaatataatgcta
agtaaaaagaacacacatgagtatgtagtctcagtggagtgacaggtttg
ctttgaaatatatgccagagggttcattttgtttcagagtgatgaactgt
tttaattaatgtcttctttatagtttgaaaaagttgcacagattttctta
aaaggtaatgttttataaattgaagagcatgtacatgctactcacaaatg
atattttctgcactttctacaaaataatttctaactctatcctccatata
tctacaaatgaaattagaacataaagcattaatcctaaacacaaagaaca
aaatttaaaattagctgaacattcactaacacacacacagttactatatt
tgggttttatgctttacttatacaaggtcagctctgttccaatttggcac
tgatagttcacaagagtgttttaagttccaaacgctgcagccaaatatcg
ttttccatcatgctgggctcggggcaaagagagatgatctggttcacttg
tattcagaatgcctaggtgctccatatggctttctttcccttggcaagtg
tgtccttaaaatcttgggcactctattataattgtataaatatataaatt
agccttcctagtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58344102_58345315
seq2: B6Ng01-225F03.b_44_1244 (reverse)

seq1  AATTCATGAAATATATTTACA-TCTAACACTTTAGCAACAATCTTGAATT  49
      ||||||||||||||||||||| ||||||  ||  ||||||  || |||||
seq2  AATTCATGAAATATATTTACATTCTAAC-GTTAGGCAACATCCTGGAATT  49

seq1  CATATTATTGTTTATTTTGATATTTTGTCCAGTTTGTC-TCTACTTTTGA  98
      |  |||||  ||||||| |||||||||| |||||  || ||||| |||||
seq2  CCAATTATGTTTTATTTGGATATTTTGT-CAGTTGTTCTTCTAC-TTTGA  97

seq1  AGGAATTGGAAAGAGCTTGGCTAGGCTACCACCAGGAGTAAACATCTTGT  148
        ||||  |||||||||  ||||||||||   |||||||||||||| |||
seq2  --GAAT--GAAAGAGCT--GCTAGGCTAC--ACAGGAGTAAACATC-TGT  138

seq1  AGAAAACATTATGATACCAGCACAGTCCAAGTAAGCCACACCTTGTCCTA  198
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AG-AAACA-TATGATACCAGCACAGTCCAAGTAAGCCACACCTTGTCCTA  186

seq1  CAATTTTTCATGTATCTGTACTTGACAGGACAGGAACATAGCAACTAATT  248
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAA-TTTTCATGTATCTGTACTTGACAGGACAGGAACATAGCAACTAATT  235

seq1  TCATGGCAAGAACAGAAAGGACAGGCATTGTTCAAGTCCTGGGGTACTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCAAGAACAGAAAGGACAGGCATTGTTCAAGTCCTGGGGTACTAT  285

seq1  TGAGTCCCTCATGGACCACAAAACTAAGTGACTGTTAACTAATTGTGTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCCTCATGGACCACAAAACTAAGTGACTGTTAACTAATTGTGTTT  335

seq1  GGGACATGAGTCTACTTCATTCAAAATAATACATCTAATGATTAAACCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATGAGTCTACTTCATTCAAAATAATACATCTAATGATTAAACCTA  385

seq1  TGTATTTGGCTTAAAACTTTTGAGTTTCCTGTTTGTTTTGGAATCTGGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGGCTTAAAACTTTTGAGTTTCCTGTTTGTTTTGGAATCTGGTG  435

seq1  GTATTAAAAACTCTTGCAGCAAACTCTCAGATCCTCTGGATCTTGCAACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAAAACTCTTGCAGCAAACTCTCAGATCCTCTGGATCTTGCAACC  485

seq1  TTTCTGCCTCCTGTTTTTCAATATTCTCTGAGGCTTAGCAGAAGTTGTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCCTCCTGTTTTTCAATATTCTCTGAGGCTTAGCAGAAGTTGTTT  535

seq1  TGTAGATCCATCAGTTGGAACTGTCTTCCACAGCTTTATATTTTGATTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATCCATCAGTTGGAACTGTCTTCCACAGCTTTATATTTTGATTGG  585

seq1  CTGTGGTAATTATTTTGTTTGAGTGTTTATTTTACTTTAACTCATATTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTAATTATTTTGTTTGAGTGTTTATTTTACTTTAACTCATATTTA  635

seq1  TGCTATTTTTCCTACAAAGGCTTGGATCCTGATTTTAAATCTGTAAGACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTTTTCCTACAAAGGCTTGGATCCTGATTTTAAATCTGTAAGACA  685

seq1  CATACCTATATTAATTAGTTCACATCTTATTATGTTCAGTTCACTAATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTATATTAATTAGTTCACATCTTATTATGTTCAGTTCACTAATTT  735

seq1  TTCATTTTAGTTGTTTTATATCAAACATGATTTTCAAAATTTCTTTTGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTAGTTGTTTTATATCAAACATGATTTTCAAAATTTCTTTTGTT  785

seq1  ATCAGTAGTTTTTAAAATATAATCATTTTTATTTTAAGTGTATACAATTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAGTTTTTAAAATATAATCATTTTTATTTTAAGTGTATACAATTT  835

seq1  ACATAGAATAATGAAATTTAAGTATATTCTTTGATGAATATATTATGTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAATAATGAAATTTAAGTATATTCTTTGATGAATATATTATGTCT  885

seq1  ATGTCAGCCAATTCTAACTTAAAACTGGGAGATAAATTAGTTTTGTATCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGCCAATTCTAACTTAAAACTGGGAGATAAATTAGTTTTGTATCA  935

seq1  ATCAAATCATGCAAACATATTAATTAAATAATCTTTATTTTCACAACCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATCATGCAAACATATTAATTAAATAATCTTTATTTTCACAACCAT  985

seq1  AACTATATGATCTATTTTAAGTTAATGGCTAATTATGTAGAACATGGATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATATGATCTATTTTAAGTTAATGGCTAATTATGTAGAACATGGATT  1035

seq1  TGATTCTTTCACTTTCCTGCAAATTGCAGTGATCATTGATATTAAAAAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTTCACTTTCCTGCAAATTGCAGTGATCATTGATATTAAAAAAT  1085

seq1  TGTTTTATGCTTGTTTGAACAGATTATTAATATACTCTTTAGGCCTCTAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATGCTTGTTTGAACAGATTATTAATATACTCTTTAGGCCTCTAG  1135

seq1  TTTTTTCTAAATCTGTTCTCTTCAGAGATTACAGAAGAGATGTAAAATTA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTAAATCTGTTCTCTTCAGAGATTACAGAAGAGATGTAAAATTA  1185

seq1  TTTGTTCGTGGAATTC  1214
      ||||||||||||||||
seq2  TTTGTTCGTGGAATTC  1201


seq1: chr5_58228651_58229613
seq2: B6Ng01-225F03.g_68_1032

seq1  GAATTCTTTTCTGCAGCATTCCAGAAATAATTGCCTACCGTTTAATCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTGCAGCATTCCAGAAATAATTGCCTACCGTTTAATCTAG  50

seq1  AAACAGATTAGACCATAAAAAAAAAGTCAGACTGCAGAACCTAAGAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATTAGACCATAAAAAAAAAGTCAGACTGCAGAACCTAAGAAGTT  100

seq1  GATGGTCCATAGATATGAACACAAAACCAAAGGTGGAAAAGAGCATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCCATAGATATGAACACAAAACCAAAGGTGGAAAAGAGCATTTAA  150

seq1  GAACATTTGCAAATAAAGTTGCTTAAAACACAGCTGAACTTTGGTGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTGCAAATAAAGTTGCTTAAAACACAGCTGAACTTTGGTGGAGA  200

seq1  GATGATCTTCTGTTGTGGTGGTTTTGTCTTTCAGTTACAGTTTTCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCTTCTGTTGTGGTGGTTTTGTCTTTCAGTTACAGTTTTCTTCCT  250

seq1  GGAGGAAGGTTGCAAGGGCAGAGGACAAATGTGGAGGAATGGGCAGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGGTTGCAAGGGCAGAGGACAAATGTGGAGGAATGGGCAGATGA  300

seq1  GTTGGATCGGGGTGACTGATGTGAAATTCAGAAAGATCAATATAATGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATCGGGGTGACTGATGTGAAATTCAGAAAGATCAATATAATGCTA  350

seq1  AGTAAAAAGAACACACATGAGTATGTAGTCTCAGTGGAGTGACAGGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAGAACACACATGAGTATGTAGTCTCAGTGGAGTGACAGGTTTG  400

seq1  CTTTGAAATATATGCCAGAGGGTTCATTTTGTTTCAGAGTGATGAACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAATATATGCCAGAGGGTTCATTTTGTTTCAGAGTGATGAACTGT  450

seq1  TTTAATTAATGTCTTCTTTATAGTTTGAAAAAGTTGCACAGATTTTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTAATGTCTTCTTTATAGTTTGAAAAAGTTGCACAGATTTTCTTA  500

seq1  AAAGGTAATGTTTTATAAATTGAAGAGCATGTACATGCTACTCACAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAATGTTTTATAAATTGAAGAGCATGTACATGCTACTCACAAATG  550

seq1  ATATTTTCTGCACTTTCTACAAAATAA-TTCTAACTCTATCCTCCATATA  599
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATATTTTCTGCACTTTCTACAAAATAATTTCTAACTCTATCCTCCATATA  600

seq1  TCTACAAATGAAATTAGAACATAAAGCATTAATCCT-AACACAAAGAACA  648
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTACAAATGAAATTAGAACATAAAGCATTAATCCTAAACACAAAGAACA  650

seq1  AAATTTAAAATTAGCTGAACATTCACTAACACACACACAGTTACTATATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAATTAGCTGAACATTCACTAACACACACACAGTTACTATATT  700

seq1  TGGG-TTTATGCTTTACTTATACAAGGTCAGCTCTGTTCCAATTTGGCAC  747
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTATGCTTTACTTATACAAGGTCAGCTCTGTTCCAATTTGGCAC  750

seq1  TGATAGTTCACAAGAGTGTTTTAAGTTCCAAACGCTGCAGCCAAATATCG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTTCACAAGAGTGTTTTAAGTTCCAAACGCTGCAGCCAAATATCG  800

seq1  -TTTCCATCATGCTGGGCTCGGGGCAAAGAGAGATGATCTGGTTCACTTG  846
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATCATGCTGGGCTCGGGGCAAAGAGAGATGATCTGGTTCACTTG  850

seq1  TATTCAGAATGCCTAGGTGCTCCATATGGCTTTCTTTCCCTTGGCAAGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGAATGCCTAGGTGCTCCATATGGCTTTCTTTCCCTTGGCAAGTG  900

seq1  TGTCCTTAAAAATCTTTGGGCACTCTATTATAATTGTATAAATAATATAA  946
      ||||||| |||||| |||||||||||||||||||||||||||| ||||||
seq2  TGTCCTT-AAAATC-TTGGGCACTCTATTATAATTGTATAAAT-ATATAA  947

seq1  ATTAGCATT-CTAGTGTA  963
      |||||| || ||||||||
seq2  ATTAGCCTTCCTAGTGTA  965


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