BAC Information

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BAC

Clone NameB6Ng01-225G08
Chromosome5 (Build37)
Map Location 135,461,022 - 135,617,672
singlet/doubletdoublet
Overlap geneCldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl
Upstream geneGats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4
Downstream geneTbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225G08.bB6Ng01-225G08.g
ACCGA039603GA039604
length821649
definitionB6Ng01-225G08.b B6Ng01-225G08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,461,022 - 135,461,838)(135,617,024 - 135,617,672)
sequence
gaattctccgtgtcgccaagatggtcttgaactcctgcctgcctccactt
tcccaagctctgggactacaggcatggcatgctgcacagggcttctgcac
aggagttgtgagacacagtttcgctgtatctggccttgaactcacagctg
tctgcttgcctcagcctcaggcaggagccaacacacctggctagacgtct
tttttttttctcatgtgtatcaaatctctttcccactgttcactcaccct
ggtactcactctgccccgcccccacccccaaaggaaagaaaacaagactc
catctagagaacctccgtgggggaaagcagcttctaggtgggcgggcatt
tgagctaagccatgtaggcttgccaccagcccaggtcacatgagggtgct
ggacaagaatttgaactcaacaccggtccctgaggtgcagagtgggctct
gcaggtggtcgttgtccctggtttcagagttctgtatatcaggttgcact
tggacaaggccagagtgcttgtgtcaaagcctgagggacttggagcaggt
gctacaattccatccacctacggcgacaaacagcctcagccacgccccca
cctaggtcctcccagtccgggttgtccagaggaattggccgcgcctccat
cctacgcctcccgcgctaaagaagacggaggtgggggacaagagagtcaa
gcagtttacaattggtgatttgcacttcaaatccttgaagcgcccctccc
actctgtatagctctagagaatttcgtttatgcttaaggagcttggggag
gtttgggaaggggagggagct
gaattctgtattgttactatagagggagttatgcatcctgggggagcagg
caaggtagtgccgggggatacatgcctggctcaccctggaaagaaaggga
ggcagatacagaggaggacctcagcagcaagctagaagctggtagtttgt
accacagtaagtggatacattggctgatgaagacaagccaagaaagagac
agcagaacagggaatgagattgtcagggaggaagaaggggagggctgtcc
caggatgctggagcctgggggagagtgctttaagggagagcaagatgtgt
gcctgggaatacctggattttgcaaagggcctggagggttctcgggcagg
ggggcggggggaataggacacaaagtcaataggcacagaatgagtgcagg
gctgcacttactaaaggtaccaggaaggagctgctaagatataggaggct
gagggagccgagggggcaggagggagcaggagggagcaggaggaaaaaga
gaagaaggagggagcaagaggaagcaggaggagcagaggtagagaaagcc
attgtacacatggagggagaaccatcaataacaggatcctgggctaagaa
ggacatttttgtttgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135461022_135461838
seq2: B6Ng01-225G08.b_46_866

seq1  GAATTCTCCGTGTCGCCAAGATGGTCTTGAACTCCTGCCTGCCTCCACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGTGTCGCCAAGATGGTCTTGAACTCCTGCCTGCCTCCACTT  50

seq1  TCCCAAGCTCTGGGACTACAGGCATGGCATGCTGCACAGGGCTTCTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGCTCTGGGACTACAGGCATGGCATGCTGCACAGGGCTTCTGCAC  100

seq1  AGGAGTTGTGAGACACAGTTTCGCTGTATCTGGCCTTGAACTCACAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTGTGAGACACAGTTTCGCTGTATCTGGCCTTGAACTCACAGCTG  150

seq1  TCTGCTTGCCTCAGCCTCAGGCAGGAGCCAACACACCTGGCTAGACGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGCCTCAGCCTCAGGCAGGAGCCAACACACCTGGCTAGACGTCT  200

seq1  TTTTTTTTTCTCATGTGTATCAAATCTCTTTCCCACTGTTCACTCACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCTCATGTGTATCAAATCTCTTTCCCACTGTTCACTCACCCT  250

seq1  GGTACTCACTCTGCCCCGCCCCCACCCCCAAAGGAAAGAAAACAAGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTCACTCTGCCCCGCCCCCACCCCCAAAGGAAAGAAAACAAGACTC  300

seq1  CATCTAGAGAACCTCCGTGGGGGAAAGCAGCTTCTAGGTGGGCGGGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGAGAACCTCCGTGGGGGAAAGCAGCTTCTAGGTGGGCGGGCATT  350

seq1  TGAGCTAAGCCATGTAGGCTTGCCACCAGCCCAGGTCACATGAGGGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAAGCCATGTAGGCTTGCCACCAGCCCAGGTCACATGAGGGTGCT  400

seq1  GGACAAGAATTTGAACTCAACACCGGTCCCTGAGGTGCAGAGTGGGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGAATTTGAACTCAACACCGGTCCCTGAGGTGCAGAGTGGGCTCT  450

seq1  GCAGGTGGTCGTTGTCCCTGGTTTCAGAGTTCTGTATATCAGGTTGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGTCGTTGTCCCTGGTTTCAGAGTTCTGTATATCAGGTTGCACT  500

seq1  TGGACAAGGCCAGAGTGCTTGTGTCAAAGCCTGAGGGACTTGGAGCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAGGCCAGAGTGCTTGTGTCAAAGCCTGAGGGACTTGGAGCAGGT  550

seq1  GCTACAATTCCATCCACCTACGGCGACAAACAGCCTCAGCCACGCCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAATTCCATCCACCTACGGCGACAAACAGCCTCAGCCACGCCCCCA  600

seq1  CCTAGGTCCTCCCAGTCCGGGTTGTCCAGAGGAATTGGCCGCGCCTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTCCTCCCAGTCCGGGTTGTCCAGAGGAATTGGCCGCGCCTCCAT  650

seq1  CCTACGCCTCCCGCGCTAAAGAAGACGGAGGTGGGGGACAAGAGAGTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACGCCTCCCGCGCTAAAGAAGACGGAGGTGGGGGACAAGAGAGTCAA  700

seq1  GCAGTTTACAATTGGTGATTTGCACTTCAAATCCTTGAAGCGCCCCTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTACAATTGGTGATTTGCACTTCAAATCCTTGAAGCGCCCCTCCC  750

seq1  ACTCTGTATAGCTCTAGAGAA-TTCG-TTATGCTTAAGGAGCTTGGGGAG  798
      ||||||||||||||||||||| |||| |||||||||||||||||||||||
seq2  ACTCTGTATAGCTCTAGAGAATTTCGTTTATGCTTAAGGAGCTTGGGGAG  800

seq1  G-TTGGGAA-GGGAGGGAGCT  817
      | ||||||| |||||||||||
seq2  GTTTGGGAAGGGGAGGGAGCT  821

seq1: chr5_135617024_135617672
seq2: B6Ng01-225G08.g_64_712 (reverse)

seq1  TACACACACACACACACACACACACACACACAAGCAAACAAAAATGTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACACACACACACACACACACACAAGCAAACAAAAATGTCCT  50

seq1  TCTTAGCCCAGGATCCTGTTATTGATGGTTCTCCCTCCATGTGTACAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCCCAGGATCCTGTTATTGATGGTTCTCCCTCCATGTGTACAATG  100

seq1  GCTTTCTCTACCTCTGCTCCTCCTGCTTCCTCTTGCTCCCTCCTTCTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCTACCTCTGCTCCTCCTGCTTCCTCTTGCTCCCTCCTTCTTCT  150

seq1  CTTTTTCCTCCTGCTCCCTCCTGCTCCCTCCTGCCCCCTCGGCTCCCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCTCCTGCTCCCTCCTGCTCCCTCCTGCCCCCTCGGCTCCCTCA  200

seq1  GCCTCCTATATCTTAGCAGCTCCTTCCTGGTACCTTTAGTAAGTGCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTATATCTTAGCAGCTCCTTCCTGGTACCTTTAGTAAGTGCAGCC  250

seq1  CTGCACTCATTCTGTGCCTATTGACTTTGTGTCCTATTCCCCCCGCCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTCATTCTGTGCCTATTGACTTTGTGTCCTATTCCCCCCGCCCCC  300

seq1  CTGCCCGAGAACCCTCCAGGCCCTTTGCAAAATCCAGGTATTCCCAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCGAGAACCCTCCAGGCCCTTTGCAAAATCCAGGTATTCCCAGGCA  350

seq1  CACATCTTGCTCTCCCTTAAAGCACTCTCCCCCAGGCTCCAGCATCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTGCTCTCCCTTAAAGCACTCTCCCCCAGGCTCCAGCATCCTGG  400

seq1  GACAGCCCTCCCCTTCTTCCTCCCTGACAATCTCATTCCCTGTTCTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCCTCCCCTTCTTCCTCCCTGACAATCTCATTCCCTGTTCTGCTG  450

seq1  TCTCTTTCTTGGCTTGTCTTCATCAGCCAATGTATCCACTTACTGTGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTTGGCTTGTCTTCATCAGCCAATGTATCCACTTACTGTGGTA  500

seq1  CAAACTACCAGCTTCTAGCTTGCTGCTGAGGTCCTCCTCTGTATCTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTACCAGCTTCTAGCTTGCTGCTGAGGTCCTCCTCTGTATCTGCCT  550

seq1  CCCTTTCTTTCCAGGGTGAGCCAGGCATGTATCCCCCGGCACTACCTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTTTCCAGGGTGAGCCAGGCATGTATCCCCCGGCACTACCTTGC  600

seq1  CTGCTCCCCCAGGATGCATAACTCCCTCTATAGTAACAATACAGAATTC  649
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCCCCAGGATGCATAACTCCCTCTATAGTAACAATACAGAATTC  649