BAC Information

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BAC

Clone NameB6Ng01-227D08
Chromosome5 (Build37)
Map Location 46,577,206 - 46,690,207
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227D08.bB6Ng01-227D08.g
ACCGA040938GA040939
length1,1701,130
definitionB6Ng01-227D08.b B6Ng01-227D08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,577,206 - 46,578,395)(46,689,071 - 46,690,207)
sequence
gaattcaaggaaatagataaatcattggtattcaaacaatgccgtttcaa
aaactcatcctttgtgaggtaagaagatcaaagcatgtttaagtcacaat
ttcaacatgaaacctaaatttaaaaaaaagtgtattttgcatttgtggaa
ctttacttaaagtaaacacagtgcttaatcttctttccccaaagcatcca
tctagctatatgaaaatcaaacagtttaaagaaagctttctctgtccttg
aattcaaaatctgtaaatgaacacaatccaaggaagtggatacaaagctg
cctcaaagtgaaatgggaagaactttattctgaaaaaaataaacgacaca
ctctggcagcttccactgctttccaaagtgaagatacatgtttataaatt
atcttaatgagctgagggacatccatttccaccaggagtgattcagcatc
cacacagataatttgagaggaaatagaatcctttcactaccccatgcatg
tgtaattctcactcagcacccttctccactgtcagaaacctctgagcact
tcaggatgggtaagccctcttaaggatcaagaaagacaaggagcacaatg
gaagacatgatggctgggtcagggctggggtgggattaattccggctctc
actctgacttggttttggacactccaatgagaactgtgtctgcttttagg
tagtcttgcttacttgggctgtaagaccagcttgcaagcaaaaagctaag
gagatagaacattataagctatacaatgtgtgccctaggtagcctatgcc
tggccagcctggttactaagaaaccattcgcctagctggttactaagaca
aagaggagggaggagaggaagaaaaccaggattcagattccttcctcatt
attattattattattccttcattatgctttcaaaatttagactccaacct
gagagactaatttcccccaaaccaaaatcctctgcatgtaataaagtcct
gatggcatttagtttcccccctccctaactgatatgcaatttctatttac
ttaaagcacactgtcatgcattataataaggtctatacatgcttcaatgt
aataatgccataataccagtgatcagtggggaggaggaagcagatgcatt
ggttcagctgatccgcacac

gaattcaaaggtcaaagatggattgatatggaaatttgagtctacaggca
gggagaagtgtgataagaattgataaaacatgtgtaccaagatgaaataa
gttggtcaaaatgaaaagaagaaaacaacagcaactctctgtttctttga
aggattatcggtgctgagtttaatacaaggaaaaagaaataggaagtttg
aaggacagactcactgttcagctttggaagtctgcagtttctgtgacaca
attcagcagagatactgaaggcatcacttaggtttgcagaaaggattcaa
aagggaacctgaatcatggtgtggaaagctgtcaatacttcattgacttg
tgagtcaagtgttaagtttgaaaagcagcatatgcgcatcatgagccacg
ttttcagaatctatcaccttgtcaaagaatgagaagtacatgaaaccaga
aacttcagaatcctaagctttggttctacagcaaattcagtttccaaaat
aatatgtgtgccatctaatccctcggtgcatctttatatccctcagtacc
atggccaggaaaagaagagaacactaaaatagtctaggcactaagcacta
cataaagaaaacctgaagggatatatatatatcttaacttgtaaatccaa
caactagataggccatgaacctaggagaaaactaaatacaactgttctac
tatagaaatgtagtaaacaatggctactagcaatgttctgctatactcat
agatcagtgccttacttagccatcactggagacacttcacctgtagcaga
tggtaacaaatacagatccacacacatagatggtgtgcagagaataagag
accttgaaacactcagtcctaaatgggctgcctccatcaaagagaaggct
gaaagactgtaagagccagaggggatggcggacaccaaaggaaccaaggc
ctgaacacagcaggacagacacatgtatgaattcacagagacagtgacag
catgcacagggtctgaatggctctgccccatccctggagtgggaaagtac
atatgcccaaatttctaacccagaagctattttcatggatacactaacag
tcaaaggtagttttctcatggagtctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_46577206_46578395
seq2: B6Ng01-227D08.b_40_1209

seq1  GAATTCAAGGAAATAGATAAATCATTGGTATTCAAACAATGCCGTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAAATAGATAAATCATTGGTATTCAAACAATGCCGTTTCAA  50

seq1  AAACTCATCCTTTGTGAGGTAAGAAGATCAAAGCATGTTTAAGTCACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATCCTTTGTGAGGTAAGAAGATCAAAGCATGTTTAAGTCACAAT  100

seq1  TTCAACATGAAACCTAAATTTAAAAAAAAGTGTATTTTGCATTTGTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATGAAACCTAAATTTAAAAAAAAGTGTATTTTGCATTTGTGGAA  150

seq1  CTTTACTTAAAGTAAACACAGTGCTTAATCTTCTTTCCCCAAAGCATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTAAAGTAAACACAGTGCTTAATCTTCTTTCCCCAAAGCATCCA  200

seq1  TCTAGCTATATGAAAATCAAACAGTTTAAAGAAAGCTTTCTCTGTCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTATATGAAAATCAAACAGTTTAAAGAAAGCTTTCTCTGTCCTTG  250

seq1  AATTCAAAATCTGTAAATGAACACAATCCAAGGAAGTGGATACAAAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAATCTGTAAATGAACACAATCCAAGGAAGTGGATACAAAGCTG  300

seq1  CCTCAAAGTGAAATGGGAAGAACTTTATTCTGAAAAAAATAAACGACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAGTGAAATGGGAAGAACTTTATTCTGAAAAAAATAAACGACACA  350

seq1  CTCTGGCAGCTTCCACTGCTTTCCAAAGTGAAGATACATGTTTATAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCAGCTTCCACTGCTTTCCAAAGTGAAGATACATGTTTATAAATT  400

seq1  ATCTTAATGAGCTGAGGGACATCCATTTCCACCAGGAGTGATTCAGCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAATGAGCTGAGGGACATCCATTTCCACCAGGAGTGATTCAGCATC  450

seq1  CACACAGATAATTTGAGAGGAAATAGAATCCTTTCACTACCCCATGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGATAATTTGAGAGGAAATAGAATCCTTTCACTACCCCATGCATG  500

seq1  TGTAATTCTCACTCAGCACCCTTCTCCACTGTCAGAAACCTCTGAGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTCTCACTCAGCACCCTTCTCCACTGTCAGAAACCTCTGAGCACT  550

seq1  TCAGGATGGGTAAGCCCTCTTAAGGATCAAGAAAGACAAGGAGCACAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGGGTAAGCCCTCTTAAGGATCAAGAAAGACAAGGAGCACAATG  600

seq1  GAAGACATGATGGCTGGGTCAGGGCTGGGGTGGGATTAATTCCGGCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACATGATGGCTGGGTCAGGGCTGGGGTGGGATTAATTCCGGCTCTC  650

seq1  ACTCTGACTTGGTTTTGGACACTCCAATGAGAACTGTGTCTGCTTTTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGACTTGGTTTTGGACACTCCAATGAGAACTGTGTCTGCTTTTAGG  700

seq1  TAGTCTTGCTTACTTGGGCTGTAAGACCAGCTTGCAAGCAAAAAGCTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTGCTTACTTGGGCTGTAAGACCAGCTTGCAAGCAAAAAGCTAAG  750

seq1  GAGATAGAACATTATAAGCTATACAATGTGTGCCCTAGGTAGCCTATGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGAACATTATAAGCTATACAATGTGTGCCCTAGGTAGCCTATGCC  800

seq1  TGGCCAGCCTGGTTACTAAGAAACCATTCGCCTAGCTGGTTACTAAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGCCTGGTTACTAAGAAACCATTCGCCTAGCTGGTTACTAAGACA  850

seq1  AAGAGGAGGGAGGAGAGGAAGAAAACCAGGATTCAGATTCCTTCCTCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGGGAGGAGAGGAAGAAAACCAGGATTCAGATTCCTTCCTCATT  900

seq1  ATTATTATTATTATTCCTTCATTATGCTTTCAAAATTTAGACTCCAACCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTATTCCTTCATTATGCTTTCAAAATTTAGACTCCAACCT  950

seq1  GAGAGAACTAATTTCCCCCAAACCAAAAATCCTCTGCATGTAAATAAAAG  1000
      ||||| |||||||||||||||||| |||||||||||||||| ||||||  
seq2  GAGAG-ACTAATTTCCCCCAAACC-AAAATCCTCTGCATGT-AATAAA--  995

seq1  GTCCTGAATGGCATTTTAGTTTCCCCCCTCCCCTTAAACTGATATGCAAA  1050
      |||||| |||||| ||||||||||||||||||    ||||||||||| ||
seq2  GTCCTG-ATGGCA-TTTAGTTTCCCCCCTCCC---TAACTGATATGC-AA  1039

seq1  TTTCTAATTTACTTAAAGCACACTGTCATGCATTATAATAAAGTCTAATA  1100
      ||||| ||||||||||||||||||||||||||||||||||| |||| |||
seq2  TTTCT-ATTTACTTAAAGCACACTGTCATGCATTATAATAAGGTCT-ATA  1087

seq1  CATGCTTCCATGTAATTATG-CATAATAACCAGTGATCAGT-GGGAGGAG  1148
      |||||||| ||||||| ||| |||||| ||||||||||||| ||||||||
seq2  CATGCTTCAATGTAATAATGCCATAAT-ACCAGTGATCAGTGGGGAGGAG  1136

seq1  GAAGGAAAGAAGGGAATTGTGTTTCCAGCTGGCCCCGCACAC  1190
      |||| | |     | |||| |||  ||||| |  ||||||||
seq2  GAAGCAGA----TGCATTG-GTT--CAGCT-GATCCGCACAC  1170


seq1: chr5_46689071_46690207
seq2: B6Ng01-227D08.g_64_1193 (reverse)

seq1  AGAGAGACTCCATTGGAGAAAACCTACTTTTGACTTGTTAGTGGTAATCC  50
      |||||||||||||  ||||||| |||| |||||| ||||||||   ||||
seq2  AGAGAGACTCCAT--GAGAAAA-CTACCTTTGAC-TGTTAGTG--TATCC  44

seq1  ATTGGAGATAGCTTCTGGGTTAGAAATTTGGGGCATATGTAACTTTCCCA  100
      | || | |||||||||||||||||||||| |||||||||| |||||||||
seq2  A-TGAAAATAGCTTCTGGGTTAGAAATTT-GGGCATATGT-ACTTTCCCA  91

seq1  CT-CAGGGATGGGGCAGAGCCATTCAGACCCTGTGCATGCTGTCACTGTC  149
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGGATGGGGCAGAGCCATTCAGACCCTGTGCATGCTGTCACTGTC  141

seq1  TCTGTGAATTCATACATGTGTCTGTCCTGCTGTGTTCAGGCCTTGGTTCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAATTCATACATGTGTCTGTCCTGCTGTGTTCAGGCCTTGGTTCC  191

seq1  -TTGGTGTCCGCCATCCCCTCTGGCTCTTACAGTCTTTCAGCCTTCTCTT  248
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTCCGCCATCCCCTCTGGCTCTTACAGTCTTTCAGCCTTCTCTT  241

seq1  TGATGGAGGCAGCCCATTTAGGACTGAGTGTTTCAAGGTCTCTTATTCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAGGCAGCCCATTTAGGACTGAGTGTTTCAAGGTCTCTTATTCTC  291

seq1  TGCACACCATCTATGTGTGTGGATCTGTATTTGTTACCATCTGCTACAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACCATCTATGTGTGTGGATCTGTATTTGTTACCATCTGCTACAGG  341

seq1  TGAAGTGTCTCCAGTGATGGCTAAGTAAGGCACTGATCTATGAGTATAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGTCTCCAGTGATGGCTAAGTAAGGCACTGATCTATGAGTATAGC  391

seq1  AGAACATTGCTAGTAGCCATTGTTTACTACATTTCTATAGTAGAACAGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATTGCTAGTAGCCATTGTTTACTACATTTCTATAGTAGAACAGTT  441

seq1  GTATTTAGTTTTCTCCTAGGTTCATGGCCTATCTAGTTGTTGGATTTACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAGTTTTCTCCTAGGTTCATGGCCTATCTAGTTGTTGGATTTACA  491

seq1  AGTTAAGATATATATATATCCCTTCAGGTTTTCTTTATGTAGTGCTTAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGATATATATATATCCCTTCAGGTTTTCTTTATGTAGTGCTTAGT  541

seq1  GCCTAGACTATTTTAGTGTTCTCTTCTTTTCCTGGCCATGGTACTGAGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGACTATTTTAGTGTTCTCTTCTTTTCCTGGCCATGGTACTGAGGG  591

seq1  ATATAAAGATGCACCGAGGGATTAGATGGCACACATATTATTTTGGAAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGATGCACCGAGGGATTAGATGGCACACATATTATTTTGGAAAC  641

seq1  TGAATTTGCTGTAGAACCAAAGCTTAGGATTCTGAAGTTTCTGGTTTCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGCTGTAGAACCAAAGCTTAGGATTCTGAAGTTTCTGGTTTCAT  691

seq1  GTACTTCTCATTCTTTGACAAGGTGATAGATTCTGAAAACGTGGCTCATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCTCATTCTTTGACAAGGTGATAGATTCTGAAAACGTGGCTCATG  741

seq1  ATGCGCATATGCTGCTTTTCAAACTTAACACTTGACTCACAAGTCAATGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCATATGCTGCTTTTCAAACTTAACACTTGACTCACAAGTCAATGA  791

seq1  AGTATTGACAGCTTTCCACACCATGATTCAGGTTCCCTTTTGAATCCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGACAGCTTTCCACACCATGATTCAGGTTCCCTTTTGAATCCTTT  841

seq1  CTGCAAACCTAAGTGATGCCTTCAGTATCTCTGCTGAATTGTGTCACAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAACCTAAGTGATGCCTTCAGTATCTCTGCTGAATTGTGTCACAGA  891

seq1  AACTGCAGACTTCCAAAGCTGAACAGTGAGTCTGTCCTTCAAACTTCCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAGACTTCCAAAGCTGAACAGTGAGTCTGTCCTTCAAACTTCCTA  941

seq1  TTTCTTTTTCCTTGTATTAAACTCAGCACCGATAATCCTTCAAAGAAACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTCCTTGTATTAAACTCAGCACCGATAATCCTTCAAAGAAACA  991

seq1  GAGAGTTGCTGTTGTTTTCTTCTTTTCATTTTGACCAACTTATTTCATCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTGCTGTTGTTTTCTTCTTTTCATTTTGACCAACTTATTTCATCT  1041

seq1  TGGTACACATGTTTTATCAATTCTTATCACACTTCTCCCTGCCTGTAGAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACACATGTTTTATCAATTCTTATCACACTTCTCCCTGCCTGTAGAC  1091

seq1  TCAAATTTCCATATCAATCCATCTTTGACCTTTGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTCCATATCAATCCATCTTTGACCTTTGAATTC  1130


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