BAC Information

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BAC

Clone NameB6Ng01-227F15
Chromosome5 (Build37)
Map Location 9,827,696 - 9,828,671
singlet/doubletsinglet
Overlap genenone
Upstream geneAbcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik, Grm3
Downstream geneLOC100042768, LOC625446, LOC435832, LOC100041395, LOC381612, EG625586, LOC242809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227F15.bB6Ng01-227F15.g
ACCGA041044GA041045
length9761,034
definitionB6Ng01-227F15.b B6Ng01-227F15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatattttgatctctgggcagttaggaagagagtattgtccaca
ccaggcaaagcttaaacataggaagcttcaaagcctacctacacagtggc
acacttcctccaacaaggccacacctcctccaataaggccacacccttta
aagggggcactatgtatgggccaaacattcaaacacatgaatctatgggg
accatatctaatcactacattacattccctggcccaaataagctggtaga
cataacgtaatgcaaattcattcagttcaacatcaaaaatctccatagtc
tatcacagtctcaacaatgtttaagtccaagttcaaagtctcttctgaga
ttcatgtaagctcttaattgaaatcccctataaaatcaaatttaaaaacc
aattcatatactttcagcatcacaagatatatgttaccattcgaaaccat
agtgaggaaatacaggagcaagaccaaaaagcaaactctaacctttgcat
cttcatgtctgatgtccaactccttttagctttgttgatggcaacccaat
tctttctcttgagctgatgctctcccagttagcagctttcctccccaggt
atcctatggctcatgcatctctaacatcttgaagttttcaacgaaccttc
attttcacagtttcttgttacagtgtctggatccacaaatgatcttctgg
gctactctaaagggtttgggtcgcttctcaagctctgtcctttgtagcat
cctaggctccagctgactcctctccactgctattgctattcttggtgaac
atcccatgatactggcatctccaatatgttgggctctatcatagtaataa
tgcttcattttcatcaacatctttttcataggctcacttcatggtgccaa
gccatgatccctttatatgatccctttagtcctaggtctccaactgccac
tgagacagcaccttcactaatggttt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatatcctgagta
atttaagaaaaaaaaaaaaaaacctgactaagccttaaggagccagtaac
taagtactttaccttagcctctgcctccaggttccagtcctgagttcttg
ccctgacttctttcattgataaattttgacctgagagttaaaagactgaa
taacttctcctaggctacttatagtaatggaattttatcacagcaaaaga
aaccctatggcaatggcaaagtgtttctatagtttaagttttatgagtga
tgtcatttgagattaggcagtgaacataaatgtcctagcataagcagaac
tgaaattggttactgcataaaattctatacttttatcatgaaagaattaa
tttgattattaggttaaaatattttatacatctacagtgtctggtacagt
gataggtatttagggcataaacatatcatatacattctctatttgattaa
tgtgttgcctcagaagagaatataagagttatgtggtctggtgtctagat
tagaaacactgactgcctagtaagcagtcataggatggggtgactttagc
aaaagtgactgagagctagtttcctttgtggatgtgttattaagacctaa
gttcagatgatagagatgagtttggtgcaagcaagtatacagcttgtgcc
aaagcttcgagtccaaagttccaatgatgtctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_9827696_9828671
seq2: B6Ng01-227F15.g_130_1102

seq1  TAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACA  50

seq1  CCAGTGAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCG  100

seq1  AGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGC  150

seq1  TTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGAC  200

seq1  ATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGA  250

seq1  AGAAGCCCCAACTGGTAAGAAGGACACATATCCTGAGTAATTTAAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCCCAACTGGTAAGAAGGACACATATCCTGAGTAATTTAAGAAAA  300

seq1  AAAAAAAAAAACCTGACTAAGCCTTAAGGAGCCAGTAACTAAGTACTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACCTGACTAAGCCTTAAGGAGCCAGTAACTAAGTACTTTA  350

seq1  CCTTAGCCTCTGCCTCCAGGTTCCAGTCCTGAGTTCTTGCCCTGACTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCCTCTGCCTCCAGGTTCCAGTCCTGAGTTCTTGCCCTGACTTCT  400

seq1  TTCATTGATAAATTTTGACCTGAGAGTTAAAAGACTGAATAACTTCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGATAAATTTTGACCTGAGAGTTAAAAGACTGAATAACTTCTCCT  450

seq1  AGGCTACTTATAGTAATGGAATTTTATCACAGCAAAAGAAACCCTATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACTTATAGTAATGGAATTTTATCACAGCAAAAGAAACCCTATGGC  500

seq1  AATGGCAAAGTGTTTCTATAGTTTAAGTTTTATGAGTGATGTCATTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAAAGTGTTTCTATAGTTTAAGTTTTATGAGTGATGTCATTTGAG  550

seq1  ATTAGGCAGTGAACATAAATGTCCTAGCATAAGCAGAACTGAAATTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCAGTGAACATAAATGTCCTAGCATAAGCAGAACTGAAATTGGTT  600

seq1  ACTGCATAAAATTCTATACTTTTATCATGAAAGAATTAATTTGATTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATAAAATTCTATACTTTTATCATGAAAGAATTAATTTGATTATTA  650

seq1  GGTTAAAATATTTTATACATCTACAGTGTCAGGTACAGTGATAGGTATTT  700
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGTTAAAATATTTTATACATCTACAGTGTCTGGTACAGTGATAGGTATTT  700

seq1  AGGGCATAAACATATCATATACATTCTCTATTTGATTAATGTGTTGCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATAAACATATCATATACATTCTCTATTTGATTAATGTGTTGCCTC  750

seq1  AGAAGAGAATATAAGAG-TATGTGGTCTGGTGTCTAGATTAGAAACACTG  799
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGAAGAGAATATAAGAGTTATGTGGTCTGGTGTCTAGATTAGAAACACTG  800

seq1  ACTGCCTAGTAAGCAGTCATAGGATGGGGTGACTTT-GGAAAAGTGACTG  848
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  ACTGCCTAGTAAGCAGTCATAGGATGGGGTGACTTTAGCAAAAGTGACTG  850

seq1  AGAGCTAGTTT-CTTTGTGGATGTGTTATTTAAGACCTAAGTTCAGATGA  897
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  AGAGCTAGTTTCCTTTGTGGATGTGTTA-TTAAGACCTAAGTTCAGATGA  899

seq1  TAGAGATGAAGTTTGGTGCAAGGAAAGTATACAGCTTGTG-CAAAGGTTC  946
      |||||||| |||||||||||| | |||||||||||||||| ||||| |||
seq2  TAGAGATG-AGTTTGGTGCAA-GCAAGTATACAGCTTGTGCCAAAGCTTC  947

seq1  AGAGTCCAGAGTTTCCCAATGAGTGTCTGA  976
       ||||||| ||||  ||||||| |||||||
seq2  -GAGTCCAAAGTT--CCAATGA-TGTCTGA  973