BAC Information

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BAC

Clone NameB6Ng01-227O13
Chromosome5 (Build37)
Map Location 91,893,294 - 92,025,080
singlet/doubletdoublet
Overlap gene9130213B05Rik
Upstream geneAlb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc
Downstream geneEG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227O13.bB6Ng01-227O13.g
ACCGA041456GA041457
length1,1151,103
definitionB6Ng01-227O13.b B6Ng01-227O13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,893,294 - 91,894,431)(92,023,978 - 92,025,080)
sequence
gaattcacctttcttttttgaggctaaaggaccagtgaagcaggtgaggt
gatctatttatacatttgcattgtttgaaatggtcagatctatgtcccag
aagtactggaagagatggggggtcttcaatgctaaaatacagttctgctt
actgaaccttatgcacagtgattcagttcacacctccctcctcatcctaa
ccaacgcatggaagaaaagcctaactcaaattaattggagaaattaatga
atctttggggccacgtaagaaatagcatgctttgatgcagccacgagacc
cattagctgcctaaagaagcagctgtgtgtgtgagcttcccagattattc
ctgcctcagaacagcaaagccattgttcgtgaccttttgcaccaatagac
tatattggtatgtctatgcgccagtttcaggggaaaggttgcaatggact
cataactttcaaaagaaaatgtgactgaactctcccatgcagttaatgat
gcacataaaatatttaccattttgggttcctttgatttgctttcaaaaac
tgttagatatatgccctgaaaagaggggaatatacagaaaccctacagta
aaactgtggagtcacttgcttttgcattagctgtatacacttcatgtgga
ttataaacatctctctgtgtcattatgcatgttttaaaagcagagtgttc
tggaacatcgactttaagaatctgtatttttaaacatgtggggtgttcca
aattcgtgggtataaataacactgagaaacatgcttatacataaatctgt
ctgcatgtttccttgagacacatttagaaaagccgaagtgctcagtcaaa
atatcctatttttaaatctttcgagaagtatagtaaattcccagcagcac
tttgatttatataacacagaaatgaaaaataatacccatgctttggagta
ttgctggcagagcaacatacaatgtggcccactctttcctgggataaatc
tcactgtcaggcagtggctgatcctgtgtgaccaccaggtgtcagtctaa
acagacaagctgactacacctagaacgaggttctctagctaaagacctcc
catctgttttcccag
gaattctggagggataaagggaagagaacatgcaggcaacggtgttaagg
gcccaaagggaaaggtggacaggaccacgcccacaggcatgaatgtagat
gatccctctatgagagatggatttcacgaaacccactctgctttagctga
cctagagtcgcgaacagagtgccaaggagatacagattccccaccccgct
gcaggcctgccctccacccgtcgccacctgactcttcactgtacggcagg
ctccacttgtcctggtttctggccacaggtaggatgggaggctgtttagc
agaggagagtgttgcactcaagggagaggctcttctgtcatggaggtggt
cttttcatagggcttagtaagttctggtttcagctcttttctgtctcagg
cctgacccccagtatgcctcctgtaccccagtcagggctctgtagtaggc
tccttcattccaactggaatgtttctttcattcttgctcccctcactgat
atgccccagccttttgaaataagattacatgtatagatataatatattat
acataatatgtatacatacattacatatattaatatatacaatgttattt
tatatacatattatatacatatgcaatgtattttattacatcaatagtaa
atataataaatatgttatttttattatataatatatacatatttatatat
ctatatgttatataatagtctataatatctgtattataatatataatatg
ttatattatatataaatattatactcatatttagaacataaataatatag
atttgatagacatatttatttattgctagtagactgtgtctaccaattca
tagttctcaggaattacttgcctgactggcctacaggctcttccaataga
agtcactgcttggctaattttagctttctctttccgccctctctctggta
ctatttctattcagagcactttgcttattttcattaaaaagatgtttatc
tcttcgccgtaaaagaaggaaaagtgaatctttcccctcttaaaggaaaa
gtgtgactattctctcttcaatcagactcttttttattaatctctgtatg
cat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_91893294_91894431
seq2: B6Ng01-227O13.b_48_1162

seq1  GAATTCACCTTTCTTTTTTGAGGCTAAAGGACCAGTGAAGCAGGTGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTTCTTTTTTGAGGCTAAAGGACCAGTGAAGCAGGTGAGGT  50

seq1  GATCTATTTATACATTTGCATTGTTTGAAATGGTCAGATCTATGTCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATTTATACATTTGCATTGTTTGAAATGGTCAGATCTATGTCCCAG  100

seq1  AAGTACTGGAAGAGATGGGGGGTCTTCAATGCTAAAATACAGTTCTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTGGAAGAGATGGGGGGTCTTCAATGCTAAAATACAGTTCTGCTT  150

seq1  ACTGAACCTTATGCACAGTGATTCAGTTCACACCTCCCTCCTCATCCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCTTATGCACAGTGATTCAGTTCACACCTCCCTCCTCATCCTAA  200

seq1  CCAACGCATGGAAGAAAAGCCTAACTCAAATTAATTGGAGAAATTAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACGCATGGAAGAAAAGCCTAACTCAAATTAATTGGAGAAATTAATGA  250

seq1  ATCTTTGGGGCCACGTAAGAAATAGCATGCTTTGATGCAGCCACGAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGGGGCCACGTAAGAAATAGCATGCTTTGATGCAGCCACGAGACC  300

seq1  CATTAGCTGCCTAAAGAAGCAGCTGTGTGTGTGAGCTTCCCAGATTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCTGCCTAAAGAAGCAGCTGTGTGTGTGAGCTTCCCAGATTATTC  350

seq1  CTGCCTCAGAACAGCAAAGCCATTGTTCGTGACCTTTTGCACCAATAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCAGAACAGCAAAGCCATTGTTCGTGACCTTTTGCACCAATAGAC  400

seq1  TATATTGGTATGTCTATGCGCCAGTTTCAGGGGAAAGGTTGCAATGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGGTATGTCTATGCGCCAGTTTCAGGGGAAAGGTTGCAATGGACT  450

seq1  CATAACTTTCAAAAGAAAATGTGACTGAACTCTCCCATGCAGTTAATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTTTCAAAAGAAAATGTGACTGAACTCTCCCATGCAGTTAATGAT  500

seq1  GCACATAAAATATTTACCATTTTGGGTTCCTTTGATTTGCTTTCAAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAAAATATTTACCATTTTGGGTTCCTTTGATTTGCTTTCAAAAAC  550

seq1  TGTTAGATATATGCCCTGAAAAGAGGGGAATATACAGAAACCCTACAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGATATATGCCCTGAAAAGAGGGGAATATACAGAAACCCTACAGTA  600

seq1  AAACTGTGGAGTCACTTGCTTTTGCATTAGCTGTATACACTTCATGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGGAGTCACTTGCTTTTGCATTAGCTGTATACACTTCATGTGGA  650

seq1  TTATAAACATCTCTCTGTGTCATTATGCATGTTTTAAAAGCAGAGTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACATCTCTCTGTGTCATTATGCATGTTTTAAAAGCAGAGTGTTC  700

seq1  TGGAACATCGACTTTAAGAATCTGTATTTTTAAACATGTGGGGTGTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACATCGACTTTAAGAATCTGTATTTTTAAACATGTGGGGTGTTCCA  750

seq1  AATTCGTGGGTATAAATAACACTGAGAAACATGCTTATACATAAATCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCGTGGGTATAAATAACACTGAGAAACATGCTTATACATAAATCTGT  800

seq1  CTGCATGTTTCCTTGAGACACATTTAGAAAAGCCGAAGTGCTCAGTCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTTTCCTTGAGACACATTTAGAAAAGCCGAAGTGCTCAGTCAAA  850

seq1  ATATCCTATTTTTAAATCTTTCGAGAAGTATAGTAAAATCCCAGCAGGCA  900
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  ATATCCTATTTTTAAATCTTTCGAGAAGTATAGTAAATTCCCAGCA-GCA  899

seq1  CTTTGATTTATATAACAACAGAAAATGAAAAATAAATACCCATGCTTTGG  950
      |||||||||||||||| |||| ||||||||||| ||||||||||||||||
seq2  CTTTGATTTATATAAC-ACAG-AAATGAAAAAT-AATACCCATGCTTTGG  946

seq1  AGTATTTGCTGGCAAGAGCAACATACAATGTGGCCCACTCTTCCCTGGGA  1000
      |||| |||||||| |||||||||||||||||||||||||||| |||||||
seq2  AGTA-TTGCTGGC-AGAGCAACATACAATGTGGCCCACTCTTTCCTGGGA  994

seq1  TAAAATTCTTCACTGTCCAGGCAGTGGCTGATCCTGTGTGACCACCAGGT  1050
      ||||  || ||||||| |||||||||||||||||||||||||||||||||
seq2  TAAA--TC-TCACTGT-CAGGCAGTGGCTGATCCTGTGTGACCACCAGGT  1040

seq1  GTCAGTCTAAAACAGAACAAGCTGAACTACACCTAAGAAGGGAGGTTCTC  1100
      |||||||| |||||| |||||||| ||||||||| ||||  |||||||||
seq2  GTCAGTCT-AAACAG-ACAAGCTG-ACTACACCT-AGAA-CGAGGTTCTC  1085

seq1  TAAGGCTTAAAGACCTCCACATCCTGTTTTTTCCCCAG  1138
      ||  || ||||||||||| ||| |||||||   |||||
seq2  TA--GC-TAAAGACCTCC-CAT-CTGTTTT---CCCAG  1115

seq1: chr5_92023978_92025080
seq2: B6Ng01-227O13.g_67_1169 (reverse)

seq1  ATGCATACAGAGATTTAAAATAAAAAGAGTCTGA-TGAAGAGGAGGAATA  49
      |||||||||||||||  ||  ||||||||||||| |||||||   |||||
seq2  ATGCATACAGAGATT--AATAAAAAAGAGTCTGATTGAAGAG--AGAATA  46

seq1  GTCACAACTTTTCCTTTAAGAGGGG-AAGATTCCACTTTTCCTCCTTTTA  98
      ||||| ||||||||||||||||||| |||||| |||||||||| ||||||
seq2  GTCAC-ACTTTTCCTTTAAGAGGGGAAAGATT-CACTTTTCCTTCTTTTA  94

seq1  CGGCG-AGAGATAAACATC-TTTTAATGAAAATAAGC-AAGTGCTCTGAA  145
      ||||| ||||||||||||| ||||||||||||||||| ||||||||||||
seq2  CGGCGAAGAGATAAACATCTTTTTAATGAAAATAAGCAAAGTGCTCTGAA  144

seq1  TAGAAATAGTACCAGAGAGAGGGCGGAAAGAGAAAGCTAAAATTAGCCAA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATAGTACCAGAGAGAGGGCGGAAAGAGAAAGCTAAAATTAGCCAA  194

seq1  GCAGTGACTTCTATTGGAAGAGCCTGTAGGCCAGTCAGGCAAGTAATTCC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGACTTCTATTGGAAGAGCCTGTAGGCCAGTCAGGCAAGTAATTCC  244

seq1  TGAGAACTATG-ATTGGTAGACACAGTCTACTAGCAATAAATAAATATGT  294
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACTATGAATTGGTAGACACAGTCTACTAGCAATAAATAAATATGT  294

seq1  CTATCAAATCTATATTATTTATGTTCTAAATATGAGTATAATATTTATAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAAATCTATATTATTTATGTTCTAAATATGAGTATAATATTTATAT  344

seq1  ATAATATAACATATTATATATTATAATACAGATATTATAGACTATTATAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATAACATATTATATATTATAATACAGATATTATAGACTATTATAT  394

seq1  AACATATAGATATATAAATATGTATATATTATATAATAAAAATAACATAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATAGATATATAAATATGTATATATTATATAATAAAAATAACATAT  444

seq1  TTATTATATTTACTATTGATGTAATAAAATACATTGCATATGTATATAAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATATTTACTATTGATGTAATAAAATACATTGCATATGTATATAAT  494

seq1  ATGTATATAAAATAACATTGTATATATTAATATATGTAATGTATGTATAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATAAAATAACATTGTATATATTAATATATGTAATGTATGTATAC  544

seq1  ATATTATGTATAATATATTATATCTATACATGTAATCTTATTTCAAAAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATGTATAATATATTATATCTATACATGTAATCTTATTTCAAAAGG  594

seq1  CTGGGGCATATCAGTGAGGGGAGCAAGAATGAAAGAAACATTCCAGTTGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCATATCAGTGAGGGGAGCAAGAATGAAAGAAACATTCCAGTTGG  644

seq1  AATGAAGGAGCCTACTACAGAGCCCTGACTGGGGTACAGGAGGCATACTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGAGCCTACTACAGAGCCCTGACTGGGGTACAGGAGGCATACTG  694

seq1  GGGGTCAGGCCTGAGACAGAAAAGAGCTGAAACCAGAACTTACTAAGCCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCAGGCCTGAGACAGAAAAGAGCTGAAACCAGAACTTACTAAGCCC  744

seq1  TATGAAAAGACCACCTCCATGACAGAAGAGCCTCTCCCTTGAGTGCAACA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAAGACCACCTCCATGACAGAAGAGCCTCTCCCTTGAGTGCAACA  794

seq1  CTCTCCTCTGCTAAACAGCCTCCCATCCTACCTGTGGCCAGAAACCAGGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCTGCTAAACAGCCTCCCATCCTACCTGTGGCCAGAAACCAGGA  844

seq1  CAAGTGGAGCCTGCCGTACAGTGAAGAGTCAGGTGGCGACGGGTGGAGGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGAGCCTGCCGTACAGTGAAGAGTCAGGTGGCGACGGGTGGAGGG  894

seq1  CAGGCCTGCAGCGGGGTGGGGAATCTGTATCTCCTTGGCACTCTGTTCGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTGCAGCGGGGTGGGGAATCTGTATCTCCTTGGCACTCTGTTCGC  944

seq1  GACTCTAGGTCAGCTAAAGCAGAGTGGGTTTCGTGAAATCCATCTCTCAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTAGGTCAGCTAAAGCAGAGTGGGTTTCGTGAAATCCATCTCTCAT  994

seq1  AGAGGGATCATCTACATTCATGCCTGTGGGCGTGGTCCTGTCCACCTTTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGATCATCTACATTCATGCCTGTGGGCGTGGTCCTGTCCACCTTTC  1044

seq1  CCTTTGGGCCCTTAACACCGTTGCCTGCATGTTCTCTTCCCTTTATCCCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGGCCCTTAACACCGTTGCCTGCATGTTCTCTTCCCTTTATCCCT  1094

seq1  CCAGAATTC  1103
      |||||||||
seq2  CCAGAATTC  1103