BAC Information

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BAC

Clone NameB6Ng01-228B08
Chromosome5 (Build37)
Map Location 68,223,850 - 68,369,531
singlet/doubletdoublet
Overlap geneAtp8a1, EG330097
Upstream gene3732412D22Rik, LOC624662, Phox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, LOC100042458
Downstream geneEG666977, AY616753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228B08.bB6Ng01-228B08.g
ACCGA041584GA041585
length993649
definitionB6Ng01-228B08.b B6Ng01-228B08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,368,539 - 68,369,531)(68,223,850 - 68,224,494)
sequence
gaattcatttcagacctgtgagtctggaagcttgttaacaattcattcaa
tgatgcctccaaagaggcaaaagaatcatgggaatgagtaaacttcatct
aagccctgatatcagaagcaaggtaactatgttgtgatgtaatgctgatc
aaaagtgcactggtttcccttaaatcattcaaaatctgttacaattagtc
acttagagggcctaacagagtctagtgacaagcttggttctgacccctgt
tactggccctaacatggattctgtggataagttgggagcttacaatagga
ggatcatgtctgctgaatggaccgagtccttctttcattactgtatgctc
ccagcatcaaaacccactttttcaagtcagggctgagtaattgagacatc
tttgtaagtatcctctatttccttttctagggcatcaaggtttaatacac
acatgagaaacactttctcatcacaccattcatcaacatggatataaact
catcacacccttgccatcagcatgccagggtgtagagctgctgcagtatt
cctgagcaggaggggacaagggacaagccaggcctcttacctgggctgta
agaatggcaaatcaaagcacactgttccaatcattccataaaaatgtagc
tgtggtgtccaagaggtaggtgtgttctgcataaacagtatgttgtgtta
tacatgtatacttatgtgcagaatcctttttagccagcaaatatgcataa
tctcaccagggctattgaaaggcttttgaaaaggttaagtttaaaaggac
tcacacactaatgtgcactaaacaatcaagtcacacttgatttttttgtg
tctgctctaatgcatgcttctttttctaattcccccggatttcttttccc
attggggtgggactttactttccggtctcttctttgttccttttgtactg
ttagcatcatatgaaagtgtctgttgtggatgattaactgtac
gaattctttataagacaccagtgtgagatggtaaactcaccatctcaact
cactctgtatggtgttggacacctgagcatggagcctgccctggagtggg
gctgagatgccagtgactgatttttgcttgtttgttttttattagtttag
gtttttttttcctccctccctcctttcctccctgtctccctccctccctt
cctcccctcctttgagaaggaccacgaagttggataaatgggttggtacg
aaggatgtgggaggggctgggtaaaaggaaagaatatgatcaaaatagag
agtatggaaaacttttaactaaaaaatctttttcaaatgctaaagagaaa
caggagagtaccacctgaaggagagcctcaggggtgcatcacagtacaaa
tgcactctattgtctgtggtttccatgaccaacagctgccagcgaacaga
caaaacactcaagaagcccaaacagaaaagaggccatcattcatttgctt
cagtgaatgtttttaaaaagacatttccaattggacaatatagaaagata
cctgacattaaagaccactattaagctcagggtaaaagctctggtttttt
attatttatcattctttcaaatatatatgatagtgttttcatgagcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_68368539_68369531
seq2: B6Ng01-228B08.b_35_1027 (reverse)

seq1  GTACAGTTTATC-TCCAC-ACAGACACTTTCCTCTGATGCTAACAGTACA  48
      |||||||| ||| ||||| |||||||||||| | ||||||||||||||||
seq2  GTACAGTTAATCATCCACAACAGACACTTTCATATGATGCTAACAGTACA  50

seq1  AAAGGAAC-AAGAAGAGA-CAGAAAGTAAAGTACCAACACAAATGAGAAA  96
      |||||||| ||||||||| | ||||||||||| || || | |||| |  |
seq2  AAAGGAACAAAGAAGAGACCGGAAAGTAAAGT-CCCACCCCAATGGG--A  97

seq1  AAAGAAAATACAGGAGGAATAAGAAAAAGAAAGCATGCATTAGAGCAGAC  146
      |||||||   | || ||||| |||||||| ||||||||||||||||||||
seq2  AAAGAAA--TCCGGGGGAATTAGAAAAAG-AAGCATGCATTAGAGCAGAC  144

seq1  ACAAAAAAATCAAGTGTGACTTGATTGTTTAGTGCACATTAGTGTGTGAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAATCAAGTGTGACTTGATTGTTTAGTGCACATTAGTGTGTGAG  194

seq1  TCCTTTTAAACTTAACCTTTTCAAAAGCCTTTCAATAGCCCTGGTGAGAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTAAACTTAACCTTTTCAAAAGCCTTTCAATAGCCCTGGTGAGAT  244

seq1  TATGCATATTTGCTGGCT-AAAAGGATTCTGCACATAAGTATACATGTAT  295
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATGCATATTTGCTGGCTAAAAAGGATTCTGCACATAAGTATACATGTAT  294

seq1  AACACAACATACTGTTTATGCAG-ACACACCTACCTCTTGGACACCACAG  344
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACACAACATACTGTTTATGCAGAACACACCTACCTCTTGGACACCACAG  344

seq1  CTACATTTTTATGGAATGATTGGAACAGTGTGCTTTGATTTGCCATTCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTTTATGGAATGATTGGAACAGTGTGCTTTGATTTGCCATTCTT  394

seq1  ACAGCCCAGGTAAGAGGCCTGGCTTGTCCCTTGTCCCCTCCTGCTCAGGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCAGGTAAGAGGCCTGGCTTGTCCCTTGTCCCCTCCTGCTCAGGA  444

seq1  ATACTGCAGCAGCTCTACACCCTGGCATGCTGATGGCAAGGGTGTGATGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCAGCAGCTCTACACCCTGGCATGCTGATGGCAAGGGTGTGATGA  494

seq1  GTTTATATCCATGTTGATGAATGGTGTGATGAGAAAGTGTTTCTCATGTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATCCATGTTGATGAATGGTGTGATGAGAAAGTGTTTCTCATGTG  544

seq1  TGTATTAAACCTTGATGCCCTAGAAAAGGAAATAGAGGATACTTACAAAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAAACCTTGATGCCCTAGAAAAGGAAATAGAGGATACTTACAAAG  594

seq1  ATGTCTCAATTACTCAGCCCTGACTTGAAAAAGTGGGTTTTGATGCTGGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCAATTACTCAGCCCTGACTTGAAAAAGTGGGTTTTGATGCTGGG  644

seq1  AGCATACAGTAATGAAAGAAGGACTCGGTCCATTCAGCAGACATGATCCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACAGTAATGAAAGAAGGACTCGGTCCATTCAGCAGACATGATCCT  694

seq1  CCTATTGTAAGCTCCCAACTTATCCACAGAATCCATGTTAGGGCCAGTAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGTAAGCTCCCAACTTATCCACAGAATCCATGTTAGGGCCAGTAA  744

seq1  CAGGGGTCAGAACCAAGCTTGTCACTAGACTCTGTTAGGCCCTCTAAGTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTCAGAACCAAGCTTGTCACTAGACTCTGTTAGGCCCTCTAAGTG  794

seq1  ACTAATTGTAACAGATTTTGAATGATTTAAGGGAAACCAGTGCACTTTTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTGTAACAGATTTTGAATGATTTAAGGGAAACCAGTGCACTTTTG  844

seq1  ATCAGCATTACATCACAACATAGTTACCTTGCTTCTGATATCAGGGCTTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCATTACATCACAACATAGTTACCTTGCTTCTGATATCAGGGCTTA  894

seq1  GATGAAGTTTACTCATTCCCATGATTCTTTTGCCTCTTTGGAGGCATCAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGTTTACTCATTCCCATGATTCTTTTGCCTCTTTGGAGGCATCAT  944

seq1  TGAATGAATTGTTAACAAGCTTCCAGACTCACAGGTCTGAAATGAATTC  993
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAATTGTTAACAAGCTTCCAGACTCACAGGTCTGAAATGAATTC  993

seq1: chr5_68223850_68224494
seq2: B6Ng01-228B08.g_69_717

seq1  GAATTCTTTATAAGACACCAGTGTGAGATGGTAAACTCACCATCTCAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATAAGACACCAGTGTGAGATGGTAAACTCACCATCTCAACT  50

seq1  CACTCTGTATGGTGTTGGACACCTGAGCATGGAGCCTGCCCTGGAGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTATGGTGTTGGACACCTGAGCATGGAGCCTGCCCTGGAGTGGG  100

seq1  GCTGAGATGCCAGTGACTGATTTTTGCTTGTTTGTTTTTTATTAGTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGATGCCAGTGACTGATTTTTGCTTGTTTGTTTTTTATTAGTTTAG  150

seq1  GTTTTTTTTTCCTCCCTCCCTCCTTTCCTCCCTGTCTCCCTCCCTCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTCCTCCCTCCCTCCTTTCCTCCCTGTCTCCCTCCCTCCCTT  200

seq1  CCTCCCCTCCTTTGAGAAGGACCACGAAGTTGGATAAATGGGTTGGTACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTCCTTTGAGAAGGACCACGAAGTTGGATAAATGGGTTGGTACG  250

seq1  AAGGATGTGGGAGGGGCTGGGTAAAAGGAAAGAATATGATCAAAATAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTGGGAGGGGCTGGGTAAAAGGAAAGAATATGATCAAAATAGAG  300

seq1  AGTATGGAAAACTTTTAACTAAAAAATCTTTTTCAAATGCTAAAGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGAAAACTTTTAACTAAAAAATCTTTTTCAAATGCTAAAGAGAAA  350

seq1  CAGGAGAGTACCACCTGAAGGAGAGCCTCAGGGGTGCATCACAGTACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGTACCACCTGAAGGAGAGCCTCAGGGGTGCATCACAGTACAAA  400

seq1  TGCACTCTATTGTCTGTGGTTTCCATGACCAACAGCTGCCAGCGAACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCTATTGTCTGTGGTTTCCATGACCAACAGCTGCCAGCGAACAGA  450

seq1  CAAAACACACAAGAAGCCCAAACAGAAAAGAGGCCATCATTCATTTGCTT  500
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACTCAAGAAGCCCAAACAGAAAAGAGGCCATCATTCATTTGCTT  500

seq1  CAGTGAATGTTTTTAAAAAGACATTTCCAATTGGACAATATAGAAAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAATGTTTTTAAAAAGACATTTCCAATTGGACAATATAGAAAGATA  550

seq1  CCTGACA-TAAAGACCACTATTAAGCTCAGGGTAAAAGCTCTGG-TCTTT  598
      ||||||| |||||||||||||||||||||||||||||||||||| | |||
seq2  CCTGACATTAAAGACCACTATTAAGCTCAGGGTAAAAGCTCTGGTTTTTT  600

seq1  AGTATTAATCA-ACATTCAAATATATAGGAGAGTG-TTTCACGAGCCCC  645
      | |||| ||||  | |||||||||||| || |||| ||||| |||||||
seq2  ATTATTTATCATTCTTTCAAATATATATGATAGTGTTTTCATGAGCCCC  649