BAC Information

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BAC

Clone NameB6Ng01-228E21
Chromosome5 (Build37)
Map Location 79,498,111 - 79,642,412
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228E21.bB6Ng01-228E21.g
ACCGA041749GA041750
length1,1451,167
definitionB6Ng01-228E21.b B6Ng01-228E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,641,267 - 79,642,412)(79,498,111 - 79,499,174)
sequence
gaattcattaaaaggttttctaatatctctaatgctcactgttcaagatt
tatcatctgcttgcaatattgatgggatttgttgaagatttctatgtttg
tgttctttaggaacatttatttttagtttcctttcattgtcccatgttag
gctagtttagtgttaaaacaattaatgataactctcctcttatatcgttg
tagagttgatatcctctcttgtctatgcctttggtagatttttttcatta
gcattcctctgccttagaattttttcagggaagtatttcaactataactc
aatctagttgatctctactgaaatcctcagttcataggttcttttcttaa
atgaggtttaatagtttctcagtgaaagatggagatgtaagtctgtagat
aggctgaagctgcatgacatttaaatattcatatctaaagaatgacatct
atttaattttaaaaggaattgattttttaattatttctgatatttgcaag
tgtcttctgtgtaacaggcagattttaactactttaaaatatattagtgc
tctaattccatttggaagaaaatgtccctagtaaaaattaaaaaaaaaaa
atgaaagaaaatatctgtaccaaaatgctttctattttcaaagcaaaact
tatcacgaccaagaattctacttttggagactatagaatcactttgtgat
aataacactccagcacaggcttacaaaaggcaaatggatgtaatgtaata
aagacaaaggacttttaagaggtgaaagtcttttttttcagaatttcaaa
atgtgtatccctcataaatttacatatgaaatctagtactcagggtgggg
atgtgtgcaagtaagcctttgagaaattaagagtagggaagtctcctgcc
aaacctgaaaaatggagcttattaaaaattggacctatgatgtagaacct
cagttcctagaattgtgagggaaacatgtgtttgtgttgctttaaactaa
caaatatgtggactaaattcctgagtgagagattagagaggatgttatcc
agtaataaagcttctttcaggctaggccaccacctccaaagatcctttta
gtcttaatttatctgggatggataggaaaacacaggttagtatac
gaattcacttttggacatgataaatcccagtactggttacacatccatgt
caaaatgtcaaaagagattcatgctatttctgaattccactagagtagtt
cacgatggtaatattagatatggggagacaggagaatggatggtatcatc
aagagagtcagtaggatgaaaaactaaggacattcagttggtaaaattgg
aagcattccaaaaattactgaagtgagtcaaaaggattatgaaactattg
aggacaggaaggtagtgacaggcaagaaaatagcaaccacagaagtgtgt
actgggatgggagttaaatagacacattattctataagtggaagcagtta
cattttgccaaatgctgctgaaatgttaaagaaaatgtcaggggaatgtc
aatggtgggcctgagaaaagtggaaatcattgtgaactttgacagaagcc
tctcaggaggggaagatatcaacttaacaggagtaggatcaagaaatgat
aggtagaaattggaggcacagcatcaaaaggaattattttcctattaagg
agaaatcccagagtacatgagggcagacacacacagggaaaatcatcaag
tctttgttgctatgaaattgcagtcaaccaatcattatattcatttcatg
aagaaagcatgtgaatagtattggactacagtctgtttgcttgacagccc
tatactgctgaataagactctccctccattgtacaggagtccatttccag
cttcaaaacctcaccacctgaattttagatgactgttctttttctgttac
tctataaatttccctagataaacacatttctaattctgtctttaagtaag
cacacacacacacacacaatcacatatatttttaagatatatacacatat
atttatatttaccattgtccaaatttactttaatgattactttcagttgt
cccaagttatagactgaaggctttaataataaattgtaccacttggtctt
tttggaacaagaaaaaagggaatacaaagaatcctttgtgcaatggccta
atagattaatcctctaagaaacaagtctaaaagaaactttgttccttgga
gttcgaagactccaagtgttggcagggtgtgaggccttataagctctttc
tcaggctcactgtagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79641267_79642412
seq2: B6Ng01-228E21.b_46_1190 (reverse)

seq1  GTATACTAA-CTGTGTTTTTCTATTCCAT-CCAGAT-AATATAGACCTAA  47
      ||||||||| ||||||||| ||| ||||| |||||| |||  ||||  ||
seq2  GTATACTAACCTGTGTTTTCCTA-TCCATCCCAGATAAATTAAGACTAAA  49

seq1  AAGATCTTT-GAG--TGTGCCCCTTAGCCTGAA--GAGCTTTATTACTGG  92
      | ||||||| |||   ||| ||  |||||||||   ||||||||||||||
seq2  AGGATCTTTGGAGGTGGTGGCC--TAGCCTGAAAGAAGCTTTATTACTGG  97

seq1  ATTAACATTCCTCTCTAATTCTCTCACTCAGGAATTTAGTCCACATATTT  142
      | ||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  A-TAACA-TCCTCTCTAA-TCTCTCACTCAGGAATTTAGTCCACATATTT  144

seq1  GTTAGTTTTAAAGCAACAACAAACACATGTTTTCCCTCACAATTCTAGGA  192
      ||||| ||||||||||| ||||||||||| ||||||||||||||||||||
seq2  GTTAG-TTTAAAGCAAC-ACAAACACATG-TTTCCCTCACAATTCTAGGA  191

seq1  ACTGAGGTTCTACATCATAGGTCCAATTTTTAATAAGCTCCATTTTTCAG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGTTCTACATCATAGGTCCAATTTTTAATAAGCTCCATTTTTCAG  241

seq1  GTTTGGCAGGAGACTTCCCTACTCTTAATTTCTCAAAGGCTTACTTGCAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCAGGAGACTTCCCTACTCTTAATTTCTCAAAGGCTTACTTGCAC  291

seq1  ACATCCCCACCCTGAGTACTAGATTTCATATGTAAATTTATGAGGGATAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCCACCCTGAGTACTAGATTTCATATGTAAATTTATGAGGGATAC  341

seq1  ACATTTTGAAATTCTGAAAAAAAAGACTTTCACCTCTTAAAAGTCCTTTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGAAATTCTGAAAAAAAAGACTTTCACCTCTTAAAAGTCCTTTG  391

seq1  TCTTTATTACATTACATCCATTTGCCTTTTGTAAGCCTGTGCTGGAGTGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTACATTACATCCATTTGCCTTTTGTAAGCCTGTGCTGGAGTGT  441

seq1  TATTATCACAAAGTGATTCTATAGTCTCCAAAAGTAGAATTCTTGGTCGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCACAAAGTGATTCTATAGTCTCCAAAAGTAGAATTCTTGGTCGT  491

seq1  GATAAGTTTTGCTTTGAAAATAGAAAGCATTTTGGTACAGATATTTTCTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTTTTGCTTTGAAAATAGAAAGCATTTTGGTACAGATATTTTCTT  541

seq1  TCATTTTTTTTTTTTAATTTTTACTAGGGACATTTTCTTCCAAATGGAAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTTTTTTTAATTTTTACTAGGGACATTTTCTTCCAAATGGAAT  591

seq1  TAGAGCACTAATATATTTTAAAGTAGTTAAAATCTGCCTGTTACACAGAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCACTAATATATTTTAAAGTAGTTAAAATCTGCCTGTTACACAGAA  641

seq1  GACACTTGCAAATATCAGAAATAATTAAAAAATCAATTCCTTTTAAAATT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTGCAAATATCAGAAATAATTAAAAAATCAATTCCTTTTAAAATT  691

seq1  AAATAGATGTCATTCTTTAGATATGAATATTTAAATGTCATGCAGCTTCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATGTCATTCTTTAGATATGAATATTTAAATGTCATGCAGCTTCA  741

seq1  GCCTATCTACAGACTTACATCTCCATCTTTCACTGAGAAACTATTAAACC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATCTACAGACTTACATCTCCATCTTTCACTGAGAAACTATTAAACC  791

seq1  TCATTTAAGAAAAGAACCTATGAACTGAGGATTTCAGTAGAGATCAACTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAGAAAAGAACCTATGAACTGAGGATTTCAGTAGAGATCAACTA  841

seq1  GATTGAGTTATAGTTGAAATACTTCCCTGAAAAAATTCTAAGGCAGAGGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGTTATAGTTGAAATACTTCCCTGAAAAAATTCTAAGGCAGAGGA  891

seq1  ATGCTAATGAAAAAAATCTACCAAAGGCATAGACAAGAGAGGATATCAAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATGAAAAAAATCTACCAAAGGCATAGACAAGAGAGGATATCAAC  941

seq1  TCTACAACGATATAAGAGGAGAGTTATCATTAATTGTTTTAACACTAAAC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAACGATATAAGAGGAGAGTTATCATTAATTGTTTTAACACTAAAC  991

seq1  TAGCCTAACATGGGACAATGAAAGGAAACTAAAAATAAATGTTCCTAAAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTAACATGGGACAATGAAAGGAAACTAAAAATAAATGTTCCTAAAG  1041

seq1  AACACAAACATAGAAATCTTCAACAAATCCCATCAATATTGCAAGCAGAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAACATAGAAATCTTCAACAAATCCCATCAATATTGCAAGCAGAT  1091

seq1  GATAAATCTTGAACAGTGAGCATTAGAGATATTAGAAAACCTTTTAATGA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATCTTGAACAGTGAGCATTAGAGATATTAGAAAACCTTTTAATGA  1141

seq1  ATTC  1146
      ||||
seq2  ATTC  1145

seq1: chr5_79498111_79499174
seq2: B6Ng01-228E21.g_144_1231

seq1  CTGAATTCCACTAGAGTAGTTCACGATGGTAATATTAGATATGGGGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTCCACTAGAGTAGTTCACGATGGTAATATTAGATATGGGGAGAC  50

seq1  AGGAGAATGGATGGTATCATCAAGAGAGTCAGTAGGATGAAAAACTAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAATGGATGGTATCATCAAGAGAGTCAGTAGGATGAAAAACTAAGG  100

seq1  ACATTCAGTTGGTAAAATTGGAAGCATTCCAAAAATTACTGAAGTGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGTTGGTAAAATTGGAAGCATTCCAAAAATTACTGAAGTGAGTC  150

seq1  AAAAGGATTATGAAACTATTGAGGACAGGAAGGTAGTGACAGGCAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATTATGAAACTATTGAGGACAGGAAGGTAGTGACAGGCAAGAAA  200

seq1  ATAGCAACCACAGAAGTGTGTACTGGGATGGGAGTTAAATAGACACATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAACCACAGAAGTGTGTACTGGGATGGGAGTTAAATAGACACATTA  250

seq1  TTCTATAAGTGGAAGCAGTTACATTTTGCCAAATGCTGCTGAAATGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAAGTGGAAGCAGTTACATTTTGCCAAATGCTGCTGAAATGTTAA  300

seq1  AGAAAATGTCAGGGGAATGTCAATGGTGGGCCTGAGAAAAGTGGAAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGTCAGGGGAATGTCAATGGTGGGCCTGAGAAAAGTGGAAATCA  350

seq1  TTGTGAACTTTGACAGAAGCCTCTCAGGAGGGGAAGATATCAACTTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACTTTGACAGAAGCCTCTCAGGAGGGGAAGATATCAACTTAACA  400

seq1  GGAGTAGGATCAAGAAATGATAGGTAGAAATTGGAGGCACAGCATCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGGATCAAGAAATGATAGGTAGAAATTGGAGGCACAGCATCAAAA  450

seq1  GGAATTATTTTCCTATTAAGGAGAAATCCCAGAGTACATGAGGGCAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTATTTTCCTATTAAGGAGAAATCCCAGAGTACATGAGGGCAGACA  500

seq1  CACACAGGGAAAATCATCAAGTCTTTGTTGCTATGAAATTGCAGTCAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGGAAAATCATCAAGTCTTTGTTGCTATGAAATTGCAGTCAACC  550

seq1  AATCATTATATTCATTTCATGAAGAAAGCATGTGAATAGTATTGGACTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTATATTCATTTCATGAAGAAAGCATGTGAATAGTATTGGACTAC  600

seq1  AGTCTGTTTGCTTGACAGCCCTATACTGCTGAATAAGACTCTCCCTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTTTGCTTGACAGCCCTATACTGCTGAATAAGACTCTCCCTCCAT  650

seq1  TGTACAGGAGTCCATTTCCAGCTTCAAAACCTCACCACCTGAATTTTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGGAGTCCATTTCCAGCTTCAAAACCTCACCACCTGAATTTTAGA  700

seq1  TGACTGTTCTTTTTCTGTTACTCTATAAATTTCCCTAGATAAACACATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTCTTTTTCTGTTACTCTATAAATTTCCCTAGATAAACACATTT  750

seq1  CTAATTCTGTCTTTAAGTAAGCACACACACACACACACAATCACATATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCTGTCTTTAAGTAAGCACACACACACACACACAATCACATATAT  800

seq1  TTTTAAGATATATACACATATATTTATATTTACCATTGTCCAAATTTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGATATATACACATATATTTATATTTACCATTGTCCAAATTTACT  850

seq1  TTAATGATTACTTTCAGTTGTCCCAAGTTATAGACTGTAAGGCTTT-ATA  899
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  TTAATGATTACTTTCAGTTGTCCCAAGTTATAGACTG-AAGGCTTTAATA  899

seq1  ATAAATTGTA-CACTTGGTCTTTT--GGACCAGAAAAA--GGAATACAAA  944
      |||||||||| |||||||||||||  | || |||||||  ||||||||||
seq2  ATAAATTGTACCACTTGGTCTTTTTGGAACAAGAAAAAAGGGAATACAAA  949

seq1  G-ATCCTTTGTGCAATGGC--TATAGA-TAATCCTCT-AGAA--CAGTCT  987
      | |||||||||||||||||   ||||| ||||||||| ||||   |||||
seq2  GAATCCTTTGTGCAATGGCCTAATAGATTAATCCTCTAAGAAACAAGTCT  999

seq1  -AAAGAA--CTTGTTCC-TGGAGTTCG-AGACTCC-AGTGTT-GCA-GGT  1029
       ||||||   ||||||| ||||||||| ||||||| |||||| ||| |||
seq2  AAAAGAAACTTTGTTCCTTGGAGTTCGAAGACTCCAAGTGTTGGCAGGGT  1049

seq1  GTGAG--CTTATTAGCTC-TTCTCA-GCTCACTGTAGGA  1064
      |||||  ||||| ||||| |||||| |||||||||||||
seq2  GTGAGGCCTTATAAGCTCTTTCTCAGGCTCACTGTAGGA  1088