BAC Information

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BAC

Clone NameB6Ng01-228G04
Chromosome5 (Build37)
Map Location 14,960,884 - 14,961,900
singlet/doubletsinglet
Overlap geneSpeer8-ps1
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228G04.bB6Ng01-228G04.g
ACCGA041810GA041811
length1,0961,024
definitionB6Ng01-228G04.b B6Ng01-228G04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccataaattcattttttttaattgctgagtagtattccattgtgt
aaatgtaccacattttatgtatccatttttctgttgagtggcatgtgggt
tctttccagcttctggctattataaacaaggctgctatgaacatagtgga
gcatgtgttcttcttaccggttgggacatcttctggatatatgcccagga
gaggtattgcaggatcctccggtagtactatgtctaattttctgaggaac
cgccagactgatttccagagtggttttacaagcttgcaatcccaccaaca
atggaggagtgctccccattctccacatccttgccagcatctgctgtcac
ctgagtttttgatcttagccattctgataggagtgaagtggaatctcagt
gttgttttaatttgcatttccctgatgattaaggatgttgaacatttttt
caggttcttctctgccattcggtattcctcaggtgagaattctttgttca
gctctgagccccatttttaatgttgttatttgattttctggagtccacct
tcttgagttctttatatatattggatattagtcacctatctgatttgtga
taggtaaagatactttcccaatcttgttggtggcctttttgtcttattga
cggtgtcttttgcttttgcagaagctttgcaattttatgaggtcccattt
gtcaattctagatcttactgcacaagccattgctgttctattcaggaact
tttcccctgtacccatatcttcaggcttctccctactttctcctctataa
gtttcagtgtctctggttttatgtggagttccttaatccacttagatttg
ggccttagtacaaggagatagaaatgggatcaattcgcattcttctacat
gataaccaccagttgttccagcaccattgtttgaaaattgctgtcttttt
tttccacctggatggtttagcttcccattggtcaaagatcaaatgaccat
aggtgtgctgggtccatcttctgggtcttcattctgcctcaatggactgg
gcctactggtctgccttatcccagtatcaatgcagttttatcacta

gaattcacatggaattagatttttcaaatttttcactttattaagaaaga
gagaatcattgtctacaaattcttttatgtccaactatgcaaatacaact
tcaagcactctggaaattctatgatggtgctaacaatttcaggaatttcc
aacaggacgcataacaagaaaaatccatatagtacaagtcttaggtgtta
gctgaatgttcaaatcagaaagcaaagagaagaatttacattttcagtaa
ctttaggatctgtgagtgttgttaatttaaataccgttatgaggagtcca
ggtacagcaggatattagcccatgcaatcgtatacggagatacagaagct
acatagtacttcaagtgttgctatcatatgtgtctaagtgacattttaca
gattaatgccaagtaaaatcaaaatatagtcccctacccattacatctta
aaacacaatgatctatcaacagttgccatttcacagcagaaagaaagcag
taggtataaattgaacacagaactgcttctcttgtaagaaatgaacacag
atatatagatacatgtatacttatacattctctttgaaattcaaggtgat
taatttgctttactaccatataaaaacaatctggctgtggtcagggaaaa
aaagctcattttccacatttaaaaagtacattggctgggtgtggtggtgc
acgcctttaatcccagctctggggaggcaggggcaggcagattttctgag
ttggaggccagcctggtctacaaagtgagttccaggacagccagggctat
acagagaaaccctgtctagaaaaaccaaaaaaaagtacacattgtcttct
ggcaagggaatcacatccatagaccacttagacctatgtgattggctaga
atgcagacataccctaattacacaccctttaatcccaaacaatgaaagta
aagttcgtttatagaaaggaagagtcattgtttgtaagtgacatctaatt
tgaaggggcaaagtgataatcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14960884_14961900
seq2: B6Ng01-228G04.g_70_1093

seq1  GAATTCACATGGAATTAGATTTTTCAAATTTTTCATTTTATTAAAAAAGA  50
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  GAATTCACATGGAATTAGATTTTTCAAATTTTTCACTTTATTAAGAAAGA  50

seq1  GAGAATCATTGTCTACAAATTCTTTTATGTCCAACTATGCAAATACAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCATTGTCTACAAATTCTTTTATGTCCAACTATGCAAATACAACT  100

seq1  TCAAGCACACTGGAAATTCTATGATGGTGCTAACAATTTCAGGAATTTCC  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCACTCTGGAAATTCTATGATGGTGCTAACAATTTCAGGAATTTCC  150

seq1  AACAGGACGCATAACAAGAAAAATCCATATAGTACAAGTCTTAGGTGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGACGCATAACAAGAAAAATCCATATAGTACAAGTCTTAGGTGTTA  200

seq1  GCTGAATTTTCAAATCAAAAAGCAAAGAGAAGAATTTACATTTTCAGTAA  250
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  GCTGAATGTTCAAATCAGAAAGCAAAGAGAAGAATTTACATTTTCAGTAA  250

seq1  CTTTAGGATCTGTGAGTGTTGTTAATTTAAATACCGTTATGAGGAGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGATCTGTGAGTGTTGTTAATTTAAATACCGTTATGAGGAGTCCA  300

seq1  GGTACATCAGGATATTAGGCCATGCAATCGTATACGGAGATACAGAAGCT  350
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  GGTACAGCAGGATATTAGCCCATGCAATCGTATACGGAGATACAGAAGCT  350

seq1  ACATAGTACTTCAAGTGTTGCTATCATATATGTCTAATTGATATTTTACA  400
      ||||||||||||||||||||||||||||| ||||||| ||| ||||||||
seq2  ACATAGTACTTCAAGTGTTGCTATCATATGTGTCTAAGTGACATTTTACA  400

seq1  GATTAATGCCAAGTAAAATCAAAATATAGTCTCCTACCCATTACATCTTA  450
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GATTAATGCCAAGTAAAATCAAAATATAGTCCCCTACCCATTACATCTTA  450

seq1  AAACACAATGATCTATCAACAGTTGCCATTTCACAGCAAAAGGAAAGCAG  500
      |||||||||||||||||||||||||||||||||||||| || ||||||||
seq2  AAACACAATGATCTATCAACAGTTGCCATTTCACAGCAGAAAGAAAGCAG  500

seq1  TAGGTATAAATTGAACACAGAACTGCTTCTCTTCTAAGAAATGAACACAG  550
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAGGTATAAATTGAACACAGAACTGCTTCTCTTGTAAGAAATGAACACAG  550

seq1  ATATATAGATACATGTATACTTATACATTCTCTTTGAAATTCAAGGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGATACATGTATACTTATACATTCTCTTTGAAATTCAAGGTGAT  600

seq1  TAATTTGCTTTACTACCATATAAAAACAATCTCGCTGTGGTCAGGG-AAA  649
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  TAATTTGCTTTACTACCATATAAAAACAATCTGGCTGTGGTCAGGGAAAA  650

seq1  AAAGCTCATTTTCCACATTTAAAAAGTACGTTGGCCGGGTGTGGTGGCAC  699
      ||||||||||||||||||||||||||||| ||||| |||||||||||  |
seq2  AAAGCTCATTTTCCACATTTAAAAAGTACATTGGCTGGGTGTGGTGGTGC  700

seq1  ACGTCTTTAATCCCAGCTCTGGGTAGGCAGAGGCAGGCAGA-TTTCTGAG  748
      ||| ||||||||||||||||||| |||||| |||||||||| ||||||||
seq2  ACGCCTTTAATCCCAGCTCTGGGGAGGCAGGGGCAGGCAGATTTTCTGAG  750

seq1  TTGGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTAT  800

seq1  ACAGAGAAACCCTGTCTAGAAAAACCAAAAAAAAGTACACATTGTC-TCT  847
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACAGAGAAACCCTGTCTAGAAAAACCAAAAAAAAGTACACATTGTCTTCT  850

seq1  GGCAA-GGAATCACATCCATAGACCACTTAGACCTATGTGATTTGGCTAG  896
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGCAAGGGAATCACATCCATAGACCACTTAGACCTATGTGA-TTGGCTAG  899

seq1  AATGCAGACATTCCCTAATTACACA-CCTTTAATCCCAAACAATGAAAGT  945
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  AATGCAGACATACCCTAATTACACACCCTTTAATCCCAAACAATGAAAGT  949

seq1  AACATTCATTTATAG-AAGGAAGAGTCA-TGTTTGCAAGTGACATCTAAT  993
      ||  ||| ||||||| |||||||||||| |||||| ||||||||||||||
seq2  AAAGTTCGTTTATAGAAAGGAAGAGTCATTGTTTGTAAGTGACATCTAAT  999

seq1  T--GAGGGGCAAAGTGATGAATCAGA  1017
      |   |||||||||||||| |||||||
seq2  TTGAAGGGGCAAAGTGAT-AATCAGA  1024


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