BAC Information

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BAC

Clone NameB6Ng01-228J20
Chromosome5 (Build37)
Map Location 121,859,825 - 122,044,681
singlet/doubletdoublet
Overlap geneC330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2
Upstream geneLhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1
Downstream gene9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228J20.bB6Ng01-228J20.g
ACCGA041984GA041985
length1,037952
definitionB6Ng01-228J20.b B6Ng01-228J20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,043,662 - 122,044,681)(121,859,825 - 121,860,771)
sequence
gaattcaaattcccagcaaccacatgatcgctcacaaccatcagtacagc
tacagtgtactcataaacataaaataaatacttcctgaatgctgagatta
aagacccagacccatttttctgctgtttttcttttttaattctgaaaaca
aaggggtcctgtgtgtctctctgagccaagctttcattctgacctgattg
actaatacagagctgcacagtctccagggagatatgaaattcgagcatat
cttttggatttctgtatgtgcagacccccggggggaatctggaagtctgc
tcagtggctcctttttaatttctcccaacagcgttctcagtttcccagat
tcctttgcacctacggtgggtcatgtgaccagcctgtgaggtccttaaat
gcttttttcctcatgttttgtgctaacggtgcggagtccggaacaacttc
agctgtccggtgctaaaatgagaggcacacgaggaaacgcgcccagacac
cttgtctggtcactggctattacagcgcgggtgacaatatccttcgagtc
accaaagcagggcgatgctcatacacagcagtctcctccttctgggtgct
ttcagaaacaggctgggcctcagcttccaagggctccacccagtttgggg
ctcctgggtttcaaaacactttctctttgcactacccagaagcccctgcc
aagattctcaccatctcctttagcctagtgatgcgttcacctggttgaaa
ggcacacaaagtgaccaggcgtccacgtctctttctagccaatgacgtcc
ctgcacctcaagtgcccagtcccaggctgttcatggaataacccgcattc
atgaattctcttcgccgccatatctgcacagatgtgagccttaggcgcca
gccaccctgcttaggagcgcacaccactctggctaggctttctcaagggt
tctgcaaactccatctcttgacttggcttttgggaagccatgtggtcgcg
ccccttatatgccgttgaggggctggggacctccctg
gaattctttgtgtacatttgatgaagtcttttttggacacaggtttgaac
tggtttctgaataaagctgatattctagaaaaatgaaacctgtgttctga
agcgaagtagctatgttatgctgatatttacctattactgtttggggggc
ggttggcgtgttaaaccagggaatgcatgctggctatgttctcagacctt
tagaagttgcattggggcctggagagatggcttggcagttaagagcactg
agtgctcttccagaggtcctgagttcaattcccagcaaccacatggtggc
tcacaaccatctgtaatgggatcagggcctctgtccaccatgctctatcc
tggtgcagtttccctcacctctttggcttccttccctccttgcagttcct
gtaaagacacagacttataaatataattttgtcatctgttttagtttttt
tttgaagactttacaagcaaaatagttgtgtttcttccccatgaaattta
tttctttccttacatttttgctgctgagattgaacgtagggctttgcaaa
tactgggcatgtactcttcctacaaatcctagcttttggcttctctttct
ttggtaattctagagattggatccagggctttcttgttgttagaccagtg
ttctgctaagctgtctccagccttcttgggtctttcggaaagacagctct
taccactgagccatgtctccagccccatgactcggtttccctgattttgt
tgagattaatttcccctcctgagaactggttgactttctcacctgcttgt
gtatcataaatatcttcagtctggtctagagcttttgctttgtccttttg
aggtccatctgagatgtatttttccagggcatttcatcgtattactccca
ttttctcttaaagagggggaggactagccctggtgtatctcaaccttaat
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_122043662_122044681
seq2: B6Ng01-228J20.b_45_1081 (reverse)

seq1  CAGGGAG--TCCCAGCCCCTC-ACGGC--CTAAGGGGCGCGACC-CCTGG  44
      |||||||   ||||||||||| |||||   |||||||||||||| | |||
seq2  CAGGGAGGTCCCCAGCCCCTCAACGGCATATAAGGGGCGCGACCACATGG  50

seq1  CT--CCCAAAGCCAAGTC-AGAGATGGAGTTTGCAGAACCC-TGAGAAAG  90
      ||  || ||||||||||| |||||||||||||||||||||| ||||||||
seq2  CTTCCCAAAAGCCAAGTCAAGAGATGGAGTTTGCAGAACCCTTGAGAAAG  100

seq1  CCTAGCCAGAGTGGTGTGCGCTCCT-AGCAGGGTGGCTGGCGCCTAAGGC  139
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCTAGCCAGAGTGGTGTGCGCTCCTAAGCAGGGTGGCTGGCGCCTAAGGC  150

seq1  TCACATCTGTGCAGATATGGCGGCGAAGAGAATTCATGAATGC-GGTTAT  188
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCACATCTGTGCAGATATGGCGGCGAAGAGAATTCATGAATGCGGGTTAT  200

seq1  TCCATGAACAGCCTGGGACTGGGCACTTGAGGTGCA-GGACGTCATTGGC  237
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCCATGAACAGCCTGGGACTGGGCACTTGAGGTGCAGGGACGTCATTGGC  250

seq1  TAGAAAGAGACGTGGACGCCTGGTCAC-TTGTGTGCCTTTCAACCAGGTG  286
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAGAAAGAGACGTGGACGCCTGGTCACTTTGTGTGCCTTTCAACCAGGTG  300

seq1  AACGCATCACTAGGCT-AAGGAGATGGTGAGAATCTTGGCAGGGGCTTCT  335
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AACGCATCACTAGGCTAAAGGAGATGGTGAGAATCTTGGCAGGGGCTTCT  350

seq1  GGGTAGTGCAAAGAG-AAGTGTTTTGAAACCCAGGAGCCCCAAACTGGGT  384
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGGTAGTGCAAAGAGAAAGTGTTTTGAAACCCAGGAGCCCCAAACTGGGT  400

seq1  GGAGCCCTTGGAAGCTGAGGCCCAGCCTGTTTCTG-AAGCACCCAGAAGG  433
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGAGCCCTTGGAAGCTGAGGCCCAGCCTGTTTCTGAAAGCACCCAGAAGG  450

seq1  AGGAGACTGCTGTGTATGAGCATCGCCCTGCTTTGGTGACTCGAAGGATA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTGCTGTGTATGAGCATCGCCCTGCTTTGGTGACTCGAAGGATA  500

seq1  TTGTCACCCGCGCTGTAATAGCCAGTGACCAGACAAGGTGTCTGGGCGCG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACCCGCGCTGTAATAGCCAGTGACCAGACAAGGTGTCTGGGCGCG  550

seq1  TTTCCTCGTGTGCCTCTCATTTTAGCACCGGACAGCTGAAGTTGTTCCGG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCGTGTGCCTCTCATTTTAGCACCGGACAGCTGAAGTTGTTCCGG  600

seq1  ACTCCGCACCGTTAGCACAAAACATGAGGAAAAAAGCATTTAAGGACCTC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGCACCGTTAGCACAAAACATGAGGAAAAAAGCATTTAAGGACCTC  650

seq1  ACAGGCTGGTCACATGACCCACCGTAGGTGCAAAGGAATCTGGGAAACTG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTGGTCACATGACCCACCGTAGGTGCAAAGGAATCTGGGAAACTG  700

seq1  AGAACGCTGTTGGGAGAAATTAAAAAGGAGCCACTGAGCAGACTTCCAGA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGCTGTTGGGAGAAATTAAAAAGGAGCCACTGAGCAGACTTCCAGA  750

seq1  TTCCCCCCGGGGGTCTGCACATACAGAAATCCAAAAGATATGCTCGAATT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCCGGGGGTCTGCACATACAGAAATCCAAAAGATATGCTCGAATT  800

seq1  TCATATCTCCCTGGAGACTGTGCAGCTCTGTATTAGTCAATCAGGTCAGA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTCCCTGGAGACTGTGCAGCTCTGTATTAGTCAATCAGGTCAGA  850

seq1  ATGAAAGCTTGGCTCAGAGAGACACACAGGACCCCTTTGTTTTCAGAATT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGCTTGGCTCAGAGAGACACACAGGACCCCTTTGTTTTCAGAATT  900

seq1  AAAAAAGAAAAACAGCAGAAAAATGGGTCTGGGTCTTTAATCTCAGCATT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAAACAGCAGAAAAATGGGTCTGGGTCTTTAATCTCAGCATT  950

seq1  CAGGAAGTATTTATTTTATGTTTATGAGTACACTGTAGCTGTACTGATGG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTATTTATTTTATGTTTATGAGTACACTGTAGCTGTACTGATGG  1000

seq1  TTGTGAGCGATCATGTGGTTGCTGGGAATTTGAATTC  1020
      |||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCGATCATGTGGTTGCTGGGAATTTGAATTC  1037

seq1: chr5_121859825_121860771
seq2: B6Ng01-228J20.g_69_1020

seq1  GAATTCTTTGTGTACATTTGATGAAGTCTTTTTTGGACACAGGTTTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGTACATTTGATGAAGTCTTTTTTGGACACAGGTTTGAAC  50

seq1  TGGTTTCTGAATAAAGCTGATATTCTAGAAAAATGAAACCTGTGTTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTGAATAAAGCTGATATTCTAGAAAAATGAAACCTGTGTTCTGA  100

seq1  AGCGAAGTAGCTATGTTATGCTGATATTTACCTATTACTGTTTGGGGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAAGTAGCTATGTTATGCTGATATTTACCTATTACTGTTTGGGGGGC  150

seq1  GGTTGGCGTGTTAAACCAGGGAATGCATGCTGGCTATGTTCTCAGACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCGTGTTAAACCAGGGAATGCATGCTGGCTATGTTCTCAGACCTT  200

seq1  TAGAAGTTGCATTGGGGCCTGGAGAGATGGCTTGGCAGTTAAGAGCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTTGCATTGGGGCCTGGAGAGATGGCTTGGCAGTTAAGAGCACTG  250

seq1  AGTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGC  300

seq1  TCACAACCATCTGTAATGGGATCAGGGCCTCTGTCCACCATGCTCTATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCATCTGTAATGGGATCAGGGCCTCTGTCCACCATGCTCTATCC  350

seq1  TGGTGCAGTTTCCCTCACCTCTTTGGCTTCCTTCCCTCCTTGCAGTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCAGTTTCCCTCACCTCTTTGGCTTCCTTCCCTCCTTGCAGTTCCT  400

seq1  GTAAAGACACAGACTTATAAATATAATTTTGTCATCTGTTTTAGTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGACACAGACTTATAAATATAATTTTGTCATCTGTTTTAGTTTTTT  450

seq1  TTTGAAGACTTTACAAGCAAAATAGTTGTGTTTCTTCCCCATGAAATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGACTTTACAAGCAAAATAGTTGTGTTTCTTCCCCATGAAATTTA  500

seq1  TTTCTTTCCTTACATTTTTGCTGCTGAGATTGAACGTAGGGCTTTGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCCTTACATTTTTGCTGCTGAGATTGAACGTAGGGCTTTGCAAA  550

seq1  TACTGGGCATGTACTCTTCCTACAAATCCTAGCTTTTGGCTTCTCTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGCATGTACTCTTCCTACAAATCCTAGCTTTTGGCTTCTCTTTCT  600

seq1  TTGGTAATTCTAGAGATTGGATCCAGGGCTTTCTTGTTGTTAGACCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAATTCTAGAGATTGGATCCAGGGCTTTCTTGTTGTTAGACCAGTG  650

seq1  TTCTGCTAAGCTGTCTCCAGCCTTCTT-GGTCTTTCGGAAAGACAGCTCT  699
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCTGCTAAGCTGTCTCCAGCCTTCTTGGGTCTTTCGGAAAGACAGCTCT  700

seq1  TAACCACTGAGCCATGTCTCCAGCCCCATGACTCGGTTTCCCTGATTTTG  749
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-ACCACTGAGCCATGTCTCCAGCCCCATGACTCGGTTTCCCTGATTTTG  749

seq1  TTGAGATTAATTTCCCCTCCTGAGAACTGGTTGACTTTCTCACCTGCTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATTAATTTCCCCTCCTGAGAACTGGTTGACTTTCTCACCTGCTTG  799

seq1  TGTATCATAAATATCTTCAGCCTGGTCTAGAGC-TTTGCTTTGTCC-TTT  847
      |||||||||||||||||||| |||||||||||| |||||||||||| |||
seq2  TGTATCATAAATATCTTCAGTCTGGTCTAGAGCTTTTGCTTTGTCCTTTT  849

seq1  GAGGTCCATCTGAGATGGTATTTTCCAGGGCATTTCATCGTAATACTTCC  897
      |||||||||||||||||   |||||||||||||||||||||| ||||  |
seq2  GAGGTCCATCTGAGATGTATTTTTCCAGGGCATTTCATCGTATTACT--C  897

seq1  CCATTTTCTCTTAAAGA-GGGGAGGAC-AGCC--TGTGTATCTC-ACCTT  942
      ||||||||||||||||| ||||||||| ||||   ||||||||| |||||
seq2  CCATTTTCTCTTAAAGAGGGGGAGGACTAGCCCTGGTGTATCTCAACCTT  947

seq1  TATTG  947
       ||||
seq2  AATTG  952