BAC Information

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BAC

Clone NameB6Ng01-228K14
Chromosome5 (Build37)
Map Location 135,131,534 - 135,304,756
singlet/doubletdoublet
Overlap geneLimk1, Eln
Upstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081
Downstream geneWbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228K14.bB6Ng01-228K14.g
ACCGA042020GA042021
length934530
definitionB6Ng01-228K14.b B6Ng01-228K14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,303,825 - 135,304,756)(135,131,534 - 135,132,069)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttagatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
tttagtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcaatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaagtaacacttgttcctgtgttgttttgagca
gagttatcctggttgacagagaccattttttttttttttttttttttttg
atttgcaagcctctgatgattgatagcgctttgtgccttctgtgtgcttg
gggactgtgtgtgtgtgtgtgtctgtctgtctgtcttatttgcagaatgt
gcatttgtagcttctactacttaaatacaggctcggttgttgttttattc
ttatggagcctgcgccctggactctgggcaatatattagagtttttcaag
aattgtcttccattctgttcggtatttcttcactttcttgattttgtgtt
tggagcatagaggctcctttgcaatcttcccacctctcccctcccctctc
ctctcttctttctctctcctccctccttccttctccctcctatcgccctc
tcaattcctcaatccctcctcctctacccttcctttcccttcccttctct
cgtttcgtttcctttcctttcactttccctcccc
cagtccctttctagagccactgagctacatctcaagccaccccacattag
gcagggtttctctgtgcagtcctggcctagacctcacagggacctgtctg
cctgtctctcagcactcagtgtgggccaccgcacccagcaccgcacccag
ccccacattcgctcttttttttttttttttttccgagacagggtttctct
gtgtagccctggctgtcctggaactcactatgtagaccaggctggtctca
aactcagaaatcgcctgctctgcttcccaagtgctgggattaaaggcgtg
cgccactacgcccagctcgctctctcttcttgcttgctccgttggagctc
tcagacacacacacgaggatgcaagccccgcgtggggagcacagaattga
ttttattgttctgagtttgggttcattcctgtcatgatcactgggccgag
gcaaggagaccttgcctctttcagtcttggtcccgcgggggtctgctcaa
attctcttccatattcaaagtgcactggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135303825_135304756
seq2: B6Ng01-228K14.b_47_980 (reverse)

seq1  GGGGAGGG-AAGGGAAAGGAAAGGAAACGAAACGAAGAGAAGGGAAGGGA  49
      |||||||| ||| ||||||||||||||||||||| |||||||||||||||
seq2  GGGGAGGGAAAGTGAAAGGAAAGGAAACGAAACG-AGAGAAGGGAAGGGA  49

seq1  AAGGAAGGGTAGAGGAGGAGGGATTGAGGGATTGAGAGGGCGATAGGAGG  99
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAGGAAGGGTAGAGGAGGAGGGATTGAGGAATTGAGAGGGCGATAGGAGG  99

seq1  GAGAAGGAAGGAGGGAGGAGAGAGAAAGAAGAGAGGAGAGGGGAGGGGAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGAAGGAGGGAGGAGAGAGAAAGAAGAGAGGAGAGGGGAGGGGAG  149

seq1  AGGTGGGAAGATTGC-AAGGAGCCTCTATGCTCCAAACACAAAATCAAGA  198
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGTGGGAAGATTGCAAAGGAGCCTCTATGCTCCAAACACAAAATCAAGA  199

seq1  AAGTGAAGAAATACCGAACAGAATGGAAGACAATTCTTG-AAAACTCTAA  247
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGTGAAGAAATACCGAACAGAATGGAAGACAATTCTTGAAAAACTCTAA  249

seq1  TATATTGCCCAGAGTCCAGGGCGCAGGCTCCATAAGAATAAAACAACAAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGCCCAGAGTCCAGGGCGCAGGCTCCATAAGAATAAAACAACAAC  299

seq1  CGAGCCTGTATTTAAGTAGTAGAAGCTACAAATGCACATTCTGCAAATAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCTGTATTTAAGTAGTAGAAGCTACAAATGCACATTCTGCAAATAA  349

seq1  GACAGACAGACAGACACACACACACACACAGTCCCCAAGCACACAGAAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGACAGACACACACACACACACAGTCCCCAAGCACACAGAAGG  399

seq1  CACAAAGCGCTATCAATCATCAGAGGCTTGCAAATCAAAAAAAAAAAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGCGCTATCAATCATCAGAGGCTTGCAAATCAAAAAAAAAAAAAA  449

seq1  AAAAAAAAAATGGTCTCTGTCAACCAGGATAACTCTGCTCAAAACAACAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATGGTCTCTGTCAACCAGGATAACTCTGCTCAAAACAACAC  499

seq1  AGGAACAAGTGTTACTTGTTATCGTGTAGAAGAATGCGAATCGATCCATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAAGTGTTACTTGTTATCGTGTAGAAGAATGCGAATCGATCCATA  549

seq1  CTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACA  599

seq1  TAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTT  649

seq1  GAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTG  699

seq1  TGCTGTAAGATTGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAAGATTGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTT  749

seq1  TCTGCAAGGCAAAAGACACCGTCAATAAGACTAAAAGACCACCAACAGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAGGCAAAAGACACCGTCAATAAGACTAAAAGACCACCAACAGAT  799

seq1  TGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCTAA  849

seq1  CATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCA  899

seq1  TTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  932
      |||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  934

seq1: chr5_135131534_135132069
seq2: B6Ng01-228K14.g_71_606

seq1  GAATTCCAGTCCCTTTCCAGAGCCACTGAGCTACATCTCAAGCCACCCCA  50
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCCTTTCTAGAGCCACTGAGCTACATCTCAAGCCACCCCA  50

seq1  CATTAGGCAGGGTTTCTCTGTGCAGTCCTGGCCTAGACCTCACAGGGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGCAGGGTTTCTCTGTGCAGTCCTGGCCTAGACCTCACAGGGACC  100

seq1  TGTCTGCCTGTCTCTCAGCACTCAGTGTGGGCCACCGCACCCAGCACCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCTGTCTCTCAGCACTCAGTGTGGGCCACCGCACCCAGCACCGC  150

seq1  ACCCAGCCCCACATTCGCTCTTTTTTTTTTTTTTTTTTCCGAGACAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCCCCACATTCGCTCTTTTTTTTTTTTTTTTTTCCGAGACAGGGT  200

seq1  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTATGTAGACCAGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTATGTAGACCAGGCTG  250

seq1  GTCTCAAACTCAGAAATCGCCTGCTCTGCTTCCCAAGTGCTGGGATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAACTCAGAAATCGCCTGCTCTGCTTCCCAAGTGCTGGGATTAAA  300

seq1  GGCGTGCGCCACTACGCCCAGCTCGCTCTCTCTTCTTGCTTGCTCCGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGCGCCACTACGCCCAGCTCGCTCTCTCTTCTTGCTTGCTCCGTTG  350

seq1  GAGCTCTCAGACACACACACGAGGATGCAAGCCCCGCGTGGGGAGCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTCAGACACACACACGAGGATGCAAGCCCCGCGTGGGGAGCACAG  400

seq1  AATTGATTTTATTGTTCTGAGTTTGGGTTCATTCCTGTCATGATCACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTTTATTGTTCTGAGTTTGGGTTCATTCCTGTCATGATCACTGG  450

seq1  GCCGAGGCAAGGAGACCTTGCCTCTTTCAGTCTTGGTCCCGCGGGGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAGGCAAGGAGACCTTGCCTCTTTCAGTCTTGGTCCCGCGGGGGTCT  500

seq1  GCTCAAATTCTCTTCCATATTCAAAGTGCACTGGGA  536
      ||||||||||||||||||||||||||||||||||||
seq2  GCTCAAATTCTCTTCCATATTCAAAGTGCACTGGGA  536