BAC Information

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BAC

Clone NameB6Ng01-229G17
Chromosome5 (Build37)
Map Location 23,288,140 - 23,422,994
singlet/doubletdoublet
Overlap genePus7, Rint1, 4933427G23Rik, Tomm7, LOC671410
Upstream geneLhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2
Downstream geneDrctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229G17.bB6Ng01-229G17.g
ACCGA042573GA042574
length598934
definitionB6Ng01-229G17.b B6Ng01-229G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,422,391 - 23,422,994)(23,288,140 - 23,289,070)
sequence
agtgcatgaagtattcaagtatccattctttagcaaactccttggcagat
agaagcttcataagtatctgttgaatacatgtgatttgagaaatgagatc
agagttcaaggataacaaggggtagatttatattctgaactcctagtctg
aaatttttaaaaagagatgacagagttagagaatacaaaataagaatgga
gtaaggccttttcctctgtgtctggaagtgcccagtagaacaattgtctt
gtcctcccctcccctcctctcctctcttcctctcccctcctctgccctcc
cctcccctctttctccttcccttctcccctccccttccctctattggttc
ctattgtcttaaaagttgtgcaacaaccaaagagaattgtataaaaggtg
tctaaggcacagatacctggacaaggtggaaagatgtacaggaactagat
ccaaagtccacttctcttcctgggctttgcagcccctgaaaagctctttg
gtgaagctctttgtagtgacaagttttgaggattatagaatcctggcttc
tttaaaatacacacacacacacacacacacacacacacacacacacac
gaattccaggactgacagtccacataacagagagactctgcctcaaccct
tcccccaaagagagagagagagagagagagagagagagagagagagagag
agagagagagagagagagagagagagagagagatgttcagaggggaactc
aagtggccgtccctctcctataagggcagcactcaaaaggctgagaaaga
cttgtgtctctagttcaagccagcctggtctacatagtaagtcctatctc
aagacaaaagaggtttatgtattcaaataaacttgttaagttaacaaatt
ctgactgttggttatttgctaatgactgcacatagtttcccctctttctc
actacagtgaacagtctgatatttgacagctccttcgttagtaaaaccat
tgccctgacattgaggcatagtgttttacggatggccacagatttttgtt
gttgtttaagagtgggaacaaaacaaagtagcacctatattttagagatc
tcttttttaaagaaatggccttgaactaaacccttcttccttgactggca
gtaattaagagcaataaccatgtgctggccattttaaaggcccctcagtg
aagggctttggtggtatggaccacagaataagtagcctgcactgtcaccc
agcagaggtttggagaaaagaccccagacgtcagcctgatcgcttctccg
tggttgagaagagcagcggccctttaaggcctgcccagcaagtaaaacat
cttgcgcccagtacccagcaccaggccgggaccagtgcaggctgctccgg
acgatctgggagcgctgagcaggacctggggaaggctggtttgtttttct
aacagggaattgagtttggggagtgcctgaggcaccacaagcaaggaaga
agtggaaaagaaggttctagcccacagcgtcgcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_23422391_23422994
seq2: B6Ng01-229G17.b_32_635 (reverse)

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTTAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTTAAAGA  50

seq1  AGCCAGGATTCTATAATCCTCAAAACTTGTCACTACAAAGAGCTTCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGATTCTATAATCCTCAAAACTTGTCACTACAAAGAGCTTCACCA  100

seq1  AAGAGCTTTTCAGGGGCTGCAAAGCCCAGGAAGAGAAGTGGACTTTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTTTTCAGGGGCTGCAAAGCCCAGGAAGAGAAGTGGACTTTGGAT  150

seq1  CTAGTTCCTGTACATCTTTCCACCTTGTCCAGGTATCTGTGCCTTAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCCTGTACATCTTTCCACCTTGTCCAGGTATCTGTGCCTTAGACA  200

seq1  CCTTTTATACAATTCTCTTTGGTTGTTGCACAACTTTTAAGACAATAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTATACAATTCTCTTTGGTTGTTGCACAACTTTTAAGACAATAGGA  250

seq1  ACCAATAGAGGGAAGGGGAGGGGAGAAGGGAAGGAGAAAGAGGGGAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATAGAGGGAAGGGGAGGGGAGAAGGGAAGGAGAAAGAGGGGAGGGG  300

seq1  AGGGCAGAGGAGGGGAGAGGAAGAGAGGAGAGGAGGGGAGGGGAGGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGAGGAGGGGAGAGGAAGAGAGGAGAGGAGGGGAGGGGAGGACAA  350

seq1  GACAATTGTTCTACTGGGCACTTCCAGACACAGAGGAAAAGGCCTTACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTGTTCTACTGGGCACTTCCAGACACAGAGGAAAAGGCCTTACTC  400

seq1  CATTCTTATTTTGTATTCTCTAACTCTGTCATCTCTTTTTAAAAATTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTATTTTGTATTCTCTAACTCTGTCATCTCTTTTTAAAAATTTCA  450

seq1  GACTAGGAGTTCAGAATATAAATCTACCCCTTGTTATCCTTGAACTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGAGTTCAGAATATAAATCTACCCCTTGTTATCCTTGAACTCTGA  500

seq1  TCTCATTTCTCAAATCACATGTATTCAACAGATACTTATGAAGCTTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTCTCAAATCACATGTATTCAACAGATACTTATGAAGCTTCTAT  550

seq1  CTGCCAAGGAGTTTGCTAAAGAATGGATACTTGAATACTTCATGCACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGGAGTTTGCTAAAGAATGGATACTTGAATACTTCATGCACTGA  600

seq1  ATTC  604
      ||||
seq2  ATTC  604

seq1: chr5_23288140_23289070
seq2: B6Ng01-229G17.g_65_998

seq1  GAATTCCAGGACTGACAGTCCACATAACAGAGAGACTCTGCCTCAACCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACTGACAGTCCACATAACAGAGAGACTCTGCCTCAACCCT  50

seq1  TCCCCCAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  100

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTTCAGAGGGGAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTTCAGAGGGGAACTC  150

seq1  AAGTGGCCGTCCCTCTCCTATAAGGGCAGCACTCAAAAGGCTGAGAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCCGTCCCTCTCCTATAAGGGCAGCACTCAAAAGGCTGAGAAAGA  200

seq1  CTTGTGTCTCTAGTTCAAGCCAGCCTGGTCTACATAGTAAGTCCTATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTCTCTAGTTCAAGCCAGCCTGGTCTACATAGTAAGTCCTATCTC  250

seq1  AAGACAAAAGAGGTTTATGTATTCAAATAAACTTGTTAAGTTAACAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAAGAGGTTTATGTATTCAAATAAACTTGTTAAGTTAACAAATT  300

seq1  CTGACTGTTGGTTATTTGCTAATGACTGCACATAGTTTCCCCTCTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGTTGGTTATTTGCTAATGACTGCACATAGTTTCCCCTCTTTCTC  350

seq1  ACTACAGTGAACAGTCTGATATTTGACAGCTCCTTCGTTAGTAAAACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGTGAACAGTCTGATATTTGACAGCTCCTTCGTTAGTAAAACCAT  400

seq1  TGCCCTGACATTGAGGCATAGTGTTTTACGGATGGCCACAGATTTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGACATTGAGGCATAGTGTTTTACGGATGGCCACAGATTTTTGTT  450

seq1  GTTGTTTAAGAGTGGGAACAAAACAAAGTAGCACCTATATTTTAGAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTAAGAGTGGGAACAAAACAAAGTAGCACCTATATTTTAGAGATC  500

seq1  TCTTTTTTAAAGAAATGGCCTTGAACTAAACCCTTCTTCCTTGACTGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTAAAGAAATGGCCTTGAACTAAACCCTTCTTCCTTGACTGGCA  550

seq1  GTAATTAAGAGCAATAACCATGTGCTGGCCATTTTAAAGGCCCCTCAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAAGAGCAATAACCATGTGCTGGCCATTTTAAAGGCCCCTCAGTG  600

seq1  AAGGGC-TTGGTGGTATGGACCACAGAATAAGTAGCCTGCACTGTCACCC  649
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTTTGGTGGTATGGACCACAGAATAAGTAGCCTGCACTGTCACCC  650

seq1  AGCAGAGG-TTGGAGAAAAGACCCCAGACGTCAGCCTGATCGCTTCTCCG  698
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGTTTGGAGAAAAGACCCCAGACGTCAGCCTGATCGCTTCTCCG  700

seq1  TGGTTGAGAAGAGCAGCGGCCC-TTAAGGCCTGCCCAGCAAGTAAAACAT  747
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGGTTGAGAAGAGCAGCGGCCCTTTAAGGCCTGCCCAGCAAGTAAAACAT  750

seq1  C-TGCGCCCAGTACCCAGCACCAGGCCGGGACCAGTGCAGGCTGCT-CGG  795
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTGCGCCCAGTACCCAGCACCAGGCCGGGACCAGTGCAGGCTGCTCCGG  800

seq1  ACGATCTGGGAGCGCTGAGCAGGACCGGGGGAAGGCTGGTTTGTTTTTCT  845
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACGATCTGGGAGCGCTGAGCAGGACCTGGGGAAGGCTGGTTTGTTTTTCT  850

seq1  AACAGGGAATTGAGTTTGGGGAGTGCCTGAGGCACCACAAAGCAAGGAAG  895
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AACAGGGAATTGAGTTTGGGGAGTGCCTGAGGCACCAC-AAGCAAGGAAG  899

seq1  AAGTGGAAAAAGAAGGTTCTAGCCCACAGCGGCGCG  931
      |||||| |||||||||||||||||||||||| ||||
seq2  AAGTGG-AAAAGAAGGTTCTAGCCCACAGCGTCGCG  934