BAC Information

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BAC

Clone NameB6Ng01-229I20
Chromosome5 (Build37)
Map Location 30,692,065 - 30,693,182
singlet/doubletsinglet
Overlap geneOtof
Upstream geneLmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060
Downstream gene1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229I20.bB6Ng01-229I20.g
ACCGA042662GA042663
length1,0451,121
definitionB6Ng01-229I20.b B6Ng01-229I20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctcatttacacgttctttaataatatttacggtgctttgcagg
cactgagttagcacttaaacatatcttgtcatttttaaaataacagcttt
aaggtataattgacgcaccatacaattcactcctacaaagtatgtaactt
caaggtttttaagctattcagagttgtaccaccatttaattttacaacac
attcatttacccataaggaggcttggttctcatttgcagtcactcactct
cggtttcctgccccttagcccctgaaaactaccaacctactttttaatcc
ccatggctttgcccactccagacatcttaagcaggggggtcctacactgc
atggcctttgtgactgttttcaaggcatgctgttttgtgggaccaaactt
cacctgtagtggcaagtactattttgctttgtaggtacacactagttaat
gggctttgggcttgcttccacttccggcgattatggataatgccgctgtg
agcacacttattctctttttaagcagccatcctggtgggtatgaagaggc
atcttagtgtggctttgatttgcatcagcttcctgatggctaatgatgtt
gagatgcttttcatggactcttaagacattcccttatcttcttggagaaa
tgcctattcatatctgtcttggttagggttccctgctgtgagcggacacc
atgaccaaggcaagtcttataaaggacaacatttagttggggctggcata
caggttcagaggttcagtccattatcatcaaggtggaacatggcagcatc
caggcagggatgatgcaggaggagctgagagttctacatcttcatctgaa
agctgctagcaaatactgggcttccaggcatctaggatgagggtcttaaa
gcccatatccagtgacacacctactccaacaggccacactttctaatagt
gcactccctgggctgagcatatacagaccatcacatatccttggtccatt
ttcaatttaatttaaattttaaagacttattttatttttaaagtg
gaattctgggttcagaccactctacaagcttcctttgggggaactttgtg
ttcaggtctctaggggagatggagcctcacccttcaatgtcgtcctcatc
cgtctcgttggccttgtggggtgtcttgatgttgtctcccttgcccacca
cagcgacatcacactttacataacccttcaacccagcagagatgtcatcg
gggtctgacaggatggcccatttgtgatggaactggtgttctgcagaggt
ggaagggcattgcatttaccatctatcccaggattccacagggcgtccaa
gctcagtgcttgctagggcttgcaagctcaaggctgcaggctcaggagac
tcaaggccatggctctggttgcattcagccagtgaagacagagggcctct
gcaggcagagggctgagcgagaccctgcccaggagcaagtgtcaggactc
cgaattgcttccaagtcagtttcacagcttgcagtctctgctgtggtccc
tgctacagctggccccacatagctgctagatagggcctactataatagag
gctttacctatcatgttcttcctttcagcccttctgagtctctccgtgtc
ttgaggtgaagccaaacatgtggcaatgctactctcttccctgcttggtc
ccaccaccccaggactgtccaggcaaagtacccattgcttcctgagctta
cacagagccaaactctaggtcattgtgtctgctccgaatgtcctcgcctt
cttcctcctccttagttagctggaaaacggatcattttatccaagagtct
cctctttccatgcagcgtcccctgaccccttcagaggaataggccctgac
ctctcagtgctcacagggtcccgtgtgcatgccccccaccacagaaatca
cctacgcaatgcctgtctccattgttgagactggtgcagagattagcagt
gtgccttcttggtgtccccaggccacaggacagtgtagagaatggtacaa
gtgtcagcaagagcattttaggaagattttgtcccccactgggttgattt
aaggtaagttgataagtacgaggttggggagacttgcttaccagttccct
tgcaggaatgaaatctgcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_30692065_30693182
seq2: B6Ng01-229I20.g_66_1186

seq1  GAATTCTGGGTTCAGACCACTCTACAAGCTTCCTTTGGGGGAACTTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGTTCAGACCACTCTACAAGCTTCCTTTGGGGGAACTTTGTG  50

seq1  TTCAGGTCTCTAGGGGAGATGGAGCCTCACCCTTCAATGTCGTCCTCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTCTCTAGGGGAGATGGAGCCTCACCCTTCAATGTCGTCCTCATC  100

seq1  CGTCTCGTTGGCCTTGTGGGGTGTCTTGATGTTGTCTCCCTTGCCCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCGTTGGCCTTGTGGGGTGTCTTGATGTTGTCTCCCTTGCCCACCA  150

seq1  CAGCGACATCACACTTTACATAACCCTTCAACCCAGCAGAGATGTCATCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGACATCACACTTTACATAACCCTTCAACCCAGCAGAGATGTCATCG  200

seq1  GGGTCTGACAGGATGGCCCATTTGTGATGGAACTGGTGTTCTGCAGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGACAGGATGGCCCATTTGTGATGGAACTGGTGTTCTGCAGAGGT  250

seq1  GGAAGGGCATTGCATTTACCATCTATCCCAGGATTCCACAGGGCGTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGCATTGCATTTACCATCTATCCCAGGATTCCACAGGGCGTCCAA  300

seq1  GCTCAGTGCTTGCTAGGGCTTGCAAGCTCAAGGCTGCAGGCTCAGGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGCTTGCTAGGGCTTGCAAGCTCAAGGCTGCAGGCTCAGGAGAC  350

seq1  TCAAGGCCATGGCTCTGGTTGCATTCAGCCAGTGAAGACAGAGGGCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCATGGCTCTGGTTGCATTCAGCCAGTGAAGACAGAGGGCCTCT  400

seq1  GCAGGCAGAGGGCTGAGCGAGACCCTGCCCAGGAGCAAGTGTCAGGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGAGGGCTGAGCGAGACCCTGCCCAGGAGCAAGTGTCAGGACTC  450

seq1  CGAATTGCTTCCAAGTCAGTTTCACAGCTTGCAGTCTCTGCTGTGGTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTGCTTCCAAGTCAGTTTCACAGCTTGCAGTCTCTGCTGTGGTCCC  500

seq1  TGCTACAGCTGGCCCC-CATAGCTGCTAGATAGGGCCTACTATAATAGAG  549
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCTACAGCTGGCCCCACATAGCTGCTAGATAGGGCCTACTATAATAGAG  550

seq1  GCTTTACCTATCATGTTCTTCCTTTCAGCCCTTCTGAGTCTCTCCGTGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACCTATCATGTTCTTCCTTTCAGCCCTTCTGAGTCTCTCCGTGTC  600

seq1  TTGAGGTGAAGCCAAACATGTGGCAATGCTACTCTCTTCCCTGCTTGGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTGAAGCCAAACATGTGGCAATGCTACTCTCTTCCCTGCTTGGTC  650

seq1  CCACCACCCCAGGACTGTCCAGGCAAAGTACCCATTGCTTCCTGAGCTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCCCAGGACTGTCCAGGCAAAGTACCCATTGCTTCCTGAGCTTA  700

seq1  CACAGAGCCAAACTCTAGGTCATTGTGTCTGCTCCGAATGTCCTCGCCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCCAAACTCTAGGTCATTGTGTCTGCTCCGAATGTCCTCGCCTT  750

seq1  CTTCCTCCTCCTTAGTTAGCTGGAAAACGGATCATTTTATCCAAGAGTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCTCCTTAGTTAGCTGGAAAACGGATCATTTTATCCAAGAGTCT  800

seq1  CCTC-TTCCATGCAGCGTCCCCTGACCCCTTCAGAGGAATAGGCCCTGAC  848
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCCATGCAGCGTCCCCTGACCCCTTCAGAGGAATAGGCCCTGAC  850

seq1  CTCTCAGTGCTCACAGGGTCCCGTGTGCATGCCCCCCACCACAGAAATCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGTGCTCACAGGGTCCCGTGTGCATGCCCCCCACCACAGAAATCA  900

seq1  CCTACGCAATGCCTGTCTCCA-TGTTGAGACTGGTGCAGAGATTAGCAGT  947
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCTACGCAATGCCTGTCTCCATTGTTGAGACTGGTGCAGAGATTAGCAGT  950

seq1  GTGCCTTC-TGGTGTCCCCAGGCCACAGGACAGTGTAGAGAAAGGTACAA  996
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  GTGCCTTCTTGGTGTCCCCAGGCCACAGGACAGTGTAGAGAATGGTACAA  1000

seq1  GTGTCAGCAAAGGAGGCATTTTAGGAAGA-TTTGT-CCCCACTGGGTTGA  1044
      ||||||||||  || |||||||||||||| ||||| ||||||||||||||
seq2  GTGTCAGCAA--GA-GCATTTTAGGAAGATTTTGTCCCCCACTGGGTTGA  1047

seq1  TTTTAAAGTTAG-TGATAAGGTACGAGG-TGGGGAGACCTGCTTAACAGT  1092
       ||||| || || |||||| |||||||| ||||||||| |||||| ||||
seq2  -TTTAAGGTAAGTTGATAA-GTACGAGGTTGGGGAGACTTGCTTACCAGT  1095

seq1  TTCC-TGCAGGAATTGAAATCTGCAGG  1118
      | || |||||||| |||||||||||||
seq2  TCCCTTGCAGGAA-TGAAATCTGCAGG  1121