BAC Information

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BAC

Clone NameB6Ng01-229K15
Chromosome5 (Build37)
Map Location 93,028,026 - 93,162,651
singlet/doubletdoublet
Overlap geneD5Ertd593e, 4932413O14Rik, Shroom3
Upstream gene9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381
Downstream geneLOC623798, Ankrd56, Sept11, Ccni, LOC100040826, 2010109A12Rik, Ccng2, LOC632115, EG330129, LOC100040885, LOC666064, LOC100040909, C87414, LOC666075, LOC666077
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229K15.bB6Ng01-229K15.g
ACCGA042739GA042740
length9601,132
definitionB6Ng01-229K15.b B6Ng01-229K15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,161,694 - 93,162,651)(93,028,026 - 93,029,157)
sequence
gaattctcggtttccttcaactatgtggaccccaggggttgagctcaggt
ccccgggcttggtggccagcaccttaatctagagagccatctcaccaacc
ccattaattggttttgagatgtaaaacccaaccccagtcatttactgatg
ctgcaaactcaaaacactttatagtctcagcttactgatggcactgcgag
ctgaggagcagatccaagccactgtgacaagccgggtgggggacagtcat
cccagctattcacatgagtgaggcaggaggattgaaagcataaggcctag
ctaggctgccaagtgagttcaaggccacccttaagaaattggattttttt
tttttcagtaaaaataatccaggtagaggcagaggcaggcagatctttga
gtttggggccaacctggtctacagagagacaaccaatctggacaaccaac
caagactacacagagaaacccagtctcaaaaaaaaaaaatgtaaaaaggg
acctgggaatatagctcagtggtggagcatttatctagcatacctgaagc
cctaagctcaattcctagcaacttccacccctgaatccaaactacctaag
actttaagaccaacagactatcaaaaacctaaaaatgatgttcaacttct
gaattagaagttaatcaatggataataaatagccttttgaaaacctaagg
attcagaaaatgagagaaatgttcaatttattttaaaagtcatggaacca
gtctccctctcttttgtcttaaagtattcacttatgttttttactttatt
tgtgtgtggtggggagggtcacagcatacttgtggaggtcaggggacacc
ttgtaagaatccattctctccttccccatgttggttcctgggtacctaac
tccgggccatcaggctgggtgcccagtgccttacctgttggcatggccct
cttactgctt
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcagattctccatttctaaaggt
ttcatcattaccaagtagctcagcctggagtccgtccaggtgccaagatg
agtcagaggtttgcaaacagttgcagttagaaaatgtctctatgaaaccc
gaggccgggaggcgccaacgtgaccgatctgcagagagggtgtttgcctg
tggagaatgtcatgtggagggagacacaggcgcagagtttgacagaaacg
cacaggtgctgtggtacattcccagagagccagggcttggagagagagga
gttggaaccagcagctcgtctgctatgctggaatattcccggaaggcaac
catgatgtcatgcatccaaattcacatacttctaaaaggttatgtgttga
aatgtgaacacggtttaggcaccaccaggatttggtatagccagagcctc
tgggccctggggtctggggaggctctgagtggaattctgagccgcgggga
gcactgccaagctttagggaagactttgagcagggttaagccaagaagag
ttgcagagtgcagtggagcctaaatagacggaggtactcagatgaggttc
gaacagggtacagacactgaaaccaataacacagagggtggtggaaaggg
aggtttactctgtcccactcttaaacacctctctccagggagagagctgg
taagtagggagaggttttgcacactaagcaattcttaattcacaggatat
caactcgatgtcctcccttttaacacagttctgacactctaccccgagtc
agttttggatctcatacgttaaagaactcagtttaagattctccccattt
caacaaatcaatcgcaagttcatgagtttttcttgcttctattggctgat
tgaacttccaggatccaacaaccattttccttggggtttcatgatttgct
agattcaagggaaacatcaatctatttttctttcatctatattcttctga
ctattcaactactatcttctttttgggatcatgatccagaactccaagga
aacatgggttatgctcactgaattttaatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_93161694_93162651
seq2: B6Ng01-229K15.b_47_1006 (reverse)

seq1  AAGCAGTAAGAAGGGCCA-GCCAACAGGTAAAGGCACTGGCCACCCAGCC  49
      |||||||||| ||||||| |||||||||| |||||||||| |||||||||
seq2  AAGCAGTAAG-AGGGCCATGCCAACAGGT-AAGGCACTGGGCACCCAGCC  48

seq1  TGATGGCCC-GAGTTAGGTACCCAGG-ACCCACATGGGGGAAGGAGAGAA  97
      ||||||||| |||||||||||||||| ||| |||| ||||||||||||||
seq2  TGATGGCCCGGAGTTAGGTACCCAGGAACCAACAT-GGGGAAGGAGAGAA  97

seq1  TGGATTCTTACAAGTTGTCCCCTGACCTCCACAAGTATGCTGTGACCCTC  147
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGATTCTTACAAGGTGTCCCCTGACCTCCACAAGTATGCTGTGACCCTC  147

seq1  CCCACCACACACAAATAAAGT-AAAAACATAAGTGAAATACTTTAAGAC-  195
      ||||||||||||||||||||| ||||||||||||| ||||||||||||| 
seq2  CCCACCACACACAAATAAAGTAAAAAACATAAGTG-AATACTTTAAGACA  196

seq1  AAAGAGAGGGAGACTGGTTCCATGACTTTTAAAAT-AATTGAACATTTCT  244
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAGAGAGGGAGACTGGTTCCATGACTTTTAAAATAAATTGAACATTTCT  246

seq1  CTCATTTTCTGAATCCTTAGGTTTTCAAAAGGCTATTTATTATCCATTGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTCTGAATCCTTAGGTTTTCAAAAGGCTATTTATTATCCATTGA  296

seq1  TTAACTTCTAATTCAGAAGTTGAACATCATTTTTAGGTTTTTGATAGTCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTCTAATTCAGAAGTTGAACATCATTTTTAGGTTTTTGATAGTCT  346

seq1  GTTGGTCTTAAAGTCTTAGGTAGTTTGGATTCAGGGGTGGAAGTTGCTAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCTTAAAGTCTTAGGTAGTTTGGATTCAGGGGTGGAAGTTGCTAG  396

seq1  GAATTGAGCTTAGGGCTTCAGGTATGCTAGATAAATGCTCCACCACTGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAGCTTAGGGCTTCAGGTATGCTAGATAAATGCTCCACCACTGAG  446

seq1  CTATATTCCCAGGTCCCTTTTTACATTTTTTTTTTTTGAGACTGGGTTTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTCCCAGGTCCCTTTTTACATTTTTTTTTTTTGAGACTGGGTTTC  496

seq1  TCTGTGTAGTCTTGGTTGGTTGTCCAGATTGGTTGTCTCTCTGTAGACCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTAGTCTTGGTTGGTTGTCCAGATTGGTTGTCTCTCTGTAGACCA  546

seq1  GGTTGGCCCCAAACTCAAAGATCTGCCTGCCTCTGCCTCTACCTGGATTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCCCCAAACTCAAAGATCTGCCTGCCTCTGCCTCTACCTGGATTA  596

seq1  TTTTTACTGAAAAAAAAAAAATCCAATTTCTTAAGGGTGGCCTTGAACTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTGAAAAAAAAAAAATCCAATTTCTTAAGGGTGGCCTTGAACTC  646

seq1  ACTTGGCAGCCTAGCTAGGCCTTATGCTTTCAATCCTCCTGCCTCACTCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCAGCCTAGCTAGGCCTTATGCTTTCAATCCTCCTGCCTCACTCA  696

seq1  TGTGAATAGCTGGGATGACTGTCCCCCACCCGGCTTGTCACAGTGGCTTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATAGCTGGGATGACTGTCCCCCACCCGGCTTGTCACAGTGGCTTG  746

seq1  GATCTGCTCCTCAGCTCGCAGTGCCATCAGTAAGCTGAGACTATAAAGTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCTCCTCAGCTCGCAGTGCCATCAGTAAGCTGAGACTATAAAGTG  796

seq1  TTTTGAGTTTGCAGCATCAGTAAATGACTGGGGTTGGGTTTTACATCTCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTTTGCAGCATCAGTAAATGACTGGGGTTGGGTTTTACATCTCA  846

seq1  AAACCAATTAATGGGGTTGGTGAGATGGCTCTCTAGATTAAGGTGCTGGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAATTAATGGGGTTGGTGAGATGGCTCTCTAGATTAAGGTGCTGGC  896

seq1  CACCAAGCCCGGGGACCTGAGCTCAACCCCTGGGGTCCACATAGTTGAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGCCCGGGGACCTGAGCTCAACCCCTGGGGTCCACATAGTTGAAG  946

seq1  GAAACCGAGAATTC  958
      ||||||||||||||
seq2  GAAACCGAGAATTC  960

seq1: chr5_93028026_93029157
seq2: B6Ng01-229K15.g_70_1201

seq1  GAATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATG  50

seq1  TTCAACATCCTTAATCATCAGGGAAATGCAGATTCTCCATTTCTAAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAATCATCAGGGAAATGCAGATTCTCCATTTCTAAAGGT  100

seq1  TTCATCATTACCAAGTAGCTCAGCCTGGAGTCCGTCCAGGTGCCAAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCATTACCAAGTAGCTCAGCCTGGAGTCCGTCCAGGTGCCAAGATG  150

seq1  AGTCAGAGGTTTGCAAACAGTTGCAGTTAGAAAATGTCTCTATGAAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGGTTTGCAAACAGTTGCAGTTAGAAAATGTCTCTATGAAACCC  200

seq1  GAGGCCGGGAGGCGCCAACGTGACCGATCTGCAGAGAGGGTGTTTGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCGGGAGGCGCCAACGTGACCGATCTGCAGAGAGGGTGTTTGCCTG  250

seq1  TGGAGAATGTCATGTGGAGGGAGACACAGGCGCAGAGTTTGACAGAAACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATGTCATGTGGAGGGAGACACAGGCGCAGAGTTTGACAGAAACG  300

seq1  CACAGGTGCTGTGGTACATTCCCAGAGAGCCAGGGCTTGGAGAGAGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGCTGTGGTACATTCCCAGAGAGCCAGGGCTTGGAGAGAGAGGA  350

seq1  GTTGGAACCAGCAGCTCGTCTGCTATGCTGGAATATTCCCGGAAGGCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAACCAGCAGCTCGTCTGCTATGCTGGAATATTCCCGGAAGGCAAC  400

seq1  CATGATGTCATGCATCCAAATTCACATACTTCTAAAAGGTTATGTGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTCATGCATCCAAATTCACATACTTCTAAAAGGTTATGTGTTGA  450

seq1  AATGTGAACACGGTTTAGGCACCACCAGGATTTGGTATAGCCAGAGCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAACACGGTTTAGGCACCACCAGGATTTGGTATAGCCAGAGCCTC  500

seq1  TGGGCCCTGGGGTCTGGGGAGGCTCTGAGTGGAATTCTGAGCCGCGGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCTGGGGTCTGGGGAGGCTCTGAGTGGAATTCTGAGCCGCGGGGA  550

seq1  GCACTGCCAAGCTTTAGGGAAGACTTTGAGCAGGGTTAAGCCAAGAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCCAAGCTTTAGGGAAGACTTTGAGCAGGGTTAAGCCAAGAAGAG  600

seq1  TTGCAGAGTGCAGTGGAGCCTAAATAGACGGAGGTACTCAGATGAGGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAGTGCAGTGGAGCCTAAATAGACGGAGGTACTCAGATGAGGTTC  650

seq1  GAACAGGGTACAGACACTGAAACCAATAACACAGAGGGTGGTGGAAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGGTACAGACACTGAAACCAATAACACAGAGGGTGGTGGAAAGGG  700

seq1  AGGTTTACTCTGTCCCACTCTTAAACACCTCTCTCCAGGGAGAGAGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTACTCTGTCCCACTCTTAAACACCTCTCTCCAGGGAGAGAGCTGG  750

seq1  TAAGTAGGGAGAGGTTTTGCACACTAAGCAATTCTTAAATTCACAGGATA  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAGTAGGGAGAGGTTTTGCACACTAAGCAATTCTT-AATTCACAGGATA  799

seq1  TCAACTCGATGTCCTCCCTTTTAACACAGTTCTGACACTCTACCCCGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCGATGTCCTCCCTTTTAACACAGTTCTGACACTCTACCCCGAGT  849

seq1  CAGTTTT-GATCTCATACGTTAAAGAACTCAGTTTAAGATTCTCCCCATT  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGGATCTCATACGTTAAAGAACTCAGTTTAAGATTCTCCCCATT  899

seq1  TCAAC-AATCAATCGCAAGTTCATGAGTTTT--CTGCTTCTATTGGCTGA  946
      ||||| |||||||||||||||||||||||||   ||||||||||||||||
seq2  TCAACAAATCAATCGCAAGTTCATGAGTTTTTCTTGCTTCTATTGGCTGA  949

seq1  -TGAACTTCCAGGATCCAACAACCA-TTTCCTT-GGGTTTCATGATTTGC  993
       |||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  TTGAACTTCCAGGATCCAACAACCATTTTCCTTGGGGTTTCATGATTTGC  999

seq1  TAGAATTCAA-GGAAACATCATTCTAATTTTCTTTCATCTATATCTTTCT  1042
      ||| |||||| |||||||||| |||| |||||||||||||||||  ||||
seq2  TAG-ATTCAAGGGAAACATCAATCTATTTTTCTTTCATCTATATTCTTCT  1048

seq1  GACTATCCACCTACCTATCTTCTTTTTGGGAATCATGAATTCACAGAACT  1092
      |||||| || ||| |||||||||||||||| |||||||  || |||||||
seq2  GACTATTCAACTA-CTATCTTCTTTTTGGG-ATCATGA--TC-CAGAACT  1093

seq1  -CAAGGAAACCATGGGTTTATGCTCACTGGATTATAATGGA  1132
       |||||||| |||||| |||||||||||| ||| |||||||
seq2  CCAAGGAAA-CATGGG-TTATGCTCACTGAATTTTAATGGA  1132