BAC Information

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BAC

Clone NameB6Ng01-229O01
Chromosome5 (Build37)
Map Location 121,509,827 - 121,630,941
singlet/doubletdoublet
Overlap geneLOC665299, Ptpn11
Upstream geneRbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a
Downstream geneRpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229O01.bB6Ng01-229O01.g
ACCGA042891GA042892
length936943
definitionB6Ng01-229O01.b B6Ng01-229O01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,509,827 - 121,510,763)(121,630,004 - 121,630,941)
sequence
gaattccaggacagtcagagctagagaaaccctgtctcaaaaacaaacaa
acaaacaaaatctgggcagaaaggcttatttggaagaatattggctcatt
tcccattattgtaacacaatgcctaaagctgggtccttatatcaagacaa
gtggttctggaggttcaaagtccaagatagggtggcctctaggaagggcc
taacagtgtgtaatattgtaacaaaaaatatatctaggaatcagagattc
tatctccagacaggaaaccagccagggggagggcccaggctagctccttt
tgtaacagggggatgaaccagcaggtgtaaaaagagagacctcgatgcct
ttggaggccagctctcccaatggcttccaccaggcttcctctcttttaaa
tcccactgtttcattgagaaccagtttctacatgtgaacccttggatgaa
tgtgccacccccatgctatcacagggggtggggagtcatccagcacgttc
aggcagagatggggaaaggtagagagaggagggggctatatttaacaatc
tacctccatgagcagcccagctccattcagtggcatgagaaccctatctc
agtgcatttccaatgagtggtgtttgcccctcaacttttatcagtcattg
gtggagggtccttcctagggcacacaaactccacagaatgatcaatcgta
tgaagccagagagagctctctgcatctggaagagggagaagctccacgtg
aacttctggtctccaggaatgctctactgttcttgccacagtgggcttca
taacactgagaggctgtccagacactcataaatgtgtctgtttctccctc
tgaacaaagtgccaagagatgaaggattgtatttgagtttcagctcatac
tgattggataatggatgggcagatgggtgggtggat
gaattcctgatgtttcttccttcacatctctggctgaccgtcaagttctt
tttctttttttcttttttcttttggttttttgagacagggtttctctgtg
tagccctggctgtcctggaactcactttgtagagcaggctggcttcgaac
tcagaaatccgcctgcctctgcctcccgagtgctgggattaaaggcgtgc
accactactgcccggcaaccgtcaaattcttaacatgtctgcagcaccct
gtagatgggagcttgcttcatcagctgtgtgtgcccagtgtaagggatgc
actagaatcactagccattctctgcagtcggggagctgctggctgcactg
agtcttccagcgctggggagaccgaggcaggaagactggggctctagagt
cccctgggctgcagagtgaggctcttctgacttgagaataccttgctgtg
tgctagtccttagccaagaacatcttgctgtgtgctagccctttgcagga
gtttggcttccattgagaaagaaagagacagtcctctgtccctatggaat
tgctggtcttgagatctgcactaggcactgaattatgcatcacccagggg
aagggccctaataaaatacaagattttactgtggttcttttttttaaaat
tagatttgtattaaattttttatttttattttttattttgttttaaaatt
ttgctttcttgttttatggatgagagaaaggtgagtgtgtttgtttgtct
gtccctgggtgtggttggaggacagcattcaagagatggttctctccttt
accatgttggtttccgggccctaaccctgttgcccaggatcaacagtaag
tgcttttacaaacccctgagctgtctcactggcccttatgatttaattta
cttgtgcgtgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_121509827_121510763
seq2: B6Ng01-229O01.b_44_979

seq1  GAATTCCAGGACAGTCAGAGCTAGAGAAACCCTGTCTCAAAAACAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGTCAGAGCTAGAGAAACCCTGTCTCAAAAACAAACAA  50

seq1  ACAAACAAAATCTGGGCAGAAAGGCTTATTTGGAAGAATATTGGCTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAATCTGGGCAGAAAGGCTTATTTGGAAGAATATTGGCTCATT  100

seq1  TCCCATTATTGTAACACAATGCCTAAAGCTGGGTCCTTATATCAAGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTATTGTAACACAATGCCTAAAGCTGGGTCCTTATATCAAGACAA  150

seq1  GTGGTTCTGGAGGTTCAAAGTCCAAGATAGGGTGGCCTCTAGGAAGGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCTGGAGGTTCAAAGTCCAAGATAGGGTGGCCTCTAGGAAGGGCC  200

seq1  TAACAGTGTGTAATATTGTAACAAAAAATATATCTAGGAATCAGAGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGTGTAATATTGTAACAAAAAATATATCTAGGAATCAGAGATTC  250

seq1  TATCTCCAGACAGGAAACCAGCCAGGGGGAGGGCCCAGGCTAGCTCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCAGACAGGAAACCAGCCAGGGGGAGGGCCCAGGCTAGCTCCTTT  300

seq1  TGTAACAGGGGGATGAACCAGCAGGTGTAAAAAGAGAGACCTCGATGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGGGGGATGAACCAGCAGGTGTAAAAAGAGAGACCTCGATGCCT  350

seq1  TTGGAGGCCAGCTCTCCCAATGGCTTCCACCAGGCTTCCTCTCTTTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGCCAGCTCTCCCAATGGCTTCCACCAGGCTTCCTCTCTTTTAAA  400

seq1  TCCCACTGTTTCATTGAGAACCAGTTTCTACATGTGAACCCTTGGATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTGTTTCATTGAGAACCAGTTTCTACATGTGAACCCTTGGATGAA  450

seq1  TGTGCCACCCCCATGCTATCACAGGGGGTGGGGAGTCATCCAGCACGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCACCCCCATGCTATCACAGGGGGTGGGGAGTCATCCAGCACGTTC  500

seq1  AGGCAGAGATGGGGAAAGGTAGAGAGAGGAGGGGGCTATATTTAACAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGATGGGGAAAGGTAGAGAGAGGAGGGGGCTATATTTAACAATC  550

seq1  TACCTCCATGAGCAGCCCAGCTCCATTCAGTGGCATGAGAACCCTATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCATGAGCAGCCCAGCTCCATTCAGTGGCATGAGAACCCTATCTC  600

seq1  AGTGCATTTCCAATGAGTGGTGTTTGCCCCTCAACTTTTATCAGTCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATTTCCAATGAGTGGTGTTTGCCCCTCAACTTTTATCAGTCATTG  650

seq1  GTGGAGGGTCCTTCCTAGGGCACACAAACTCCACAGAATGATCAATCGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGGTCCTTCCTAGGGCACACAAACTCCACAGAATGATCAATCGTA  700

seq1  TGAAGCCAGAGAGAGCTCTCTGCATCTGGAAGAGGGAGAAGCTCCACGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCAGAGAGAGCTCTCTGCATCTGGAAGAGGGAGAAGCTCCACGTG  750

seq1  AACTTCTGGTCTCCAGGAATGCTCTACTGTTCTTGCCACAGTGGGCTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGGTCTCCAGGAATGCTCTACTGTTCTTGCCACAGTGGGCTTCA  800

seq1  TAACACTGAGAGGCTGTCCAGACACTCATAAATGTGTCTGTTTCTCCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTGAGAGGCTGTCCAGACACTCATAAATGTGTCTGTTTCTCCCTC  850

seq1  TGAACAAAAGTGCCAAGAGATGAAGGATTGTATTTGAGTTTCAGCTCATA  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAC-AAAGTGCCAAGAGATGAAGGATTGTATTTGAGTTTCAGCTCATA  899

seq1  CTGATTGGATAATGGATGGGCAGATGGGTGGGTGGAT  937
      |||||||||||||||||||||||||||||||||||||
seq2  CTGATTGGATAATGGATGGGCAGATGGGTGGGTGGAT  936

seq1: chr5_121630004_121630941
seq2: B6Ng01-229O01.g_68_1010 (reverse)

seq1  ACACACACACACACACACACACACACACATGCACACGCACAAGTAAA-TA  49
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACACACACACACACACACACACACACACATGCACACGCACAAGTAAATTA  50

seq1  AATCATAA-GGCCAGTGAGACAGCTCA-GGGTTTGTAAAAGCACTTACTG  97
      |||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  AATCATAAGGGCCAGTGAGACAGCTCAGGGGTTTGTAAAAGCACTTACTG  100

seq1  TTGATCCT-GGCAACAGGGTTA-GGCCCGGAAACCAACATGGTAAAGGAG  145
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  TTGATCCTGGGCAACAGGGTTAGGGCCCGGAAACCAACATGGTAAAGGAG  150

seq1  AGAACCATCTCTTGAATGCTGTCCTCCAACCACACCCAGGGACAGACAAA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCATCTCTTGAATGCTGTCCTCCAACCACACCCAGGGACAGACAAA  200

seq1  CAAACACACTCACCTTTCTCTCATCCATAAAACAAGAAAGCAAAATTTTA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACACTCACCTTTCTCTCATCCATAAAACAAGAAAGCAAAATTTTA  250

seq1  AAACAAAATAAAAAATAAAAATAAAAAATTTAATACAAATCTAATTTTAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATAAAAAATAAAAATAAAAAATTTAATACAAATCTAATTTTAA  300

seq1  AAAAAAGAACCACAGTAAAATCTTGTATTTTATTAGGGCCCTTCCCCTGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAACCACAGTAAAATCTTGTATTTTATTAGGGCCCTTCCCCTGG  350

seq1  GTGATGCATAATTCAGTGCCTAGTGCAGATCTCAAGACCAGCAATTCCAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGCATAATTCAGTGCCTAGTGCAGATCTCAAGACCAGCAATTCCAT  400

seq1  AGGGACAGAGGACTGTCTCTTTCTTTCTCAATGGAAGCCAAACTCCTGCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGAGGACTGTCTCTTTCTTTCTCAATGGAAGCCAAACTCCTGCA  450

seq1  AAGGGCTAGCACACAGCAAGATGTTCTTGGCTAAGGACTAGCACACAGCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTAGCACACAGCAAGATGTTCTTGGCTAAGGACTAGCACACAGCA  500

seq1  AGGTATTCTCAAGTCAGAAGAGCCTCACTCTGCAGCCCAGGGGACTCTAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTCTCAAGTCAGAAGAGCCTCACTCTGCAGCCCAGGGGACTCTAG  550

seq1  AGCCCCAGTCTTCCTGCCTCGGTCTCCCCAGCGCTGGAAGACTCAGTGCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCAGTCTTCCTGCCTCGGTCTCCCCAGCGCTGGAAGACTCAGTGCA  600

seq1  GCCAGCAGCTCCCCGACTGCAGAGAATGGCTAGTGATTCTAGTGCATCCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAGCTCCCCGACTGCAGAGAATGGCTAGTGATTCTAGTGCATCCC  650

seq1  TTACACTGGGCACACACAGCTGATGAAGCAAGCTCCCATCTACAGGGTGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTGGGCACACACAGCTGATGAAGCAAGCTCCCATCTACAGGGTGC  700

seq1  TGCAGACATGTTAAGAATTTGACGGTTGCCGGGCAGTAGTGGTGCACGCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACATGTTAAGAATTTGACGGTTGCCGGGCAGTAGTGGTGCACGCC  750

seq1  TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAA  800

seq1  GCCAGCCTGCTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGCTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAG  850

seq1  AAACCCTGTCTCAAAAAACCAAAAGAAAAAAGAAAAAAAGAAAAAGAACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGTCTCAAAAAACCAAAAGAAAAAAGAAAAAAAGAAAAAGAACT  900

seq1  TGACGGTCAGCCAGAGATGTGAAGGAAGAAACATCAGGAATTC  938
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGGTCAGCCAGAGATGTGAAGGAAGAAACATCAGGAATTC  943