BAC Information

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BAC

Clone NameB6Ng01-230E16
Chromosome5 (Build37)
Map Location 16,904,346 - 16,905,440
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668121, Hgf, EG668131, LOC626390, LOC668142, LOC100041749, LOC100041832
Downstream geneSpeer4f, EG630927, Sema3c, Cd36, Gnat3, Gnai1, LOC100041818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230E16.bB6Ng01-230E16.g
ACCGA043193GA043194
length9741,092
definitionB6Ng01-230E16.b B6Ng01-230E16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaggactggaactcaagcaggtcagaaaacaggagctgatgcaga
ggccatggagggatattctttactggcttgcttccctggtttgctcagcc
atgtctcttatagaacccaaaactcccagcccagggatggtcccactcac
agggggcccttcccccttgatcactaattgagaaaatgcctcacagctgg
atctcatggaggcacttccccaactgaagctcctttctctgtgataactc
tagcttgtgtcaagttgacacaaactagccagtacaattgaccccttgtc
aaattgacacacaaacacatcactagtaagcctcaacatttagtttctta
ttcatccccaagatctaaacaactttaaaagtcccagagtctttgcaaaa
tcttaaaaattcaatttccttaaaatatccaatctcttttaaaatccaaa
gtctttttaaattaaagtttcttaactgtgggctctactcaaatacttcc
ttcaagagggaaaaatatcaggacaaagtcacaatcaaaagcaaaaatcg
atctccaatcatccagtgtctgggatccaactcacaatcttctgggttcc
tccaagggcttgggtcacttttccagctctgccctttgtagcacacacct
tgtcctctaggctccagatgcctgtactccactgctgctgctgttctcgg
tgttcattcatggaactggcatctccaaaatgctgccatcttcagctgta
actaggcttcaccaatagcctctcacaggctctcttcaaaggtgctgtgc
ctcaactcctttgcatgaccccttcagtcctgggacatcaaatgctactg
aggctacacctttaccaaaggccttccattacctctcacagtgccaaacc
tcagctgctcttcatgaccccttcatgccttcaaaactagtaccacctgg
gtgactcttaacattaccaagtcc
gaattcttaaaaagtggagtctcattactatttgtaaccaattgaatttt
tttctttttgactattagactctagaattgctacacattgtgttgttgct
agttctgttctgcaatagtaattattaaatgattgtttctagcaaataaa
ggaatctacaagggaatgtgtcttgctttcctgtctgtatttcaataact
ctggtgattttagatgctgtctaagtcatccatgtacaaaacaccgattc
caggttattttattttattttctatttacattattgatactgaatacaca
gatatgaattcactgggattaatgattcattttttgatgagtaaaaagtg
aatttttctaaagagaaggatgccatgtgtcctttcaaaaattaatgtgt
ctagtttgggagaagagaataaagcaagagaaagggaaatgaggagaaga
tagatggggataaagaaaggaagaataaatgaagctggtaccagggaaat
agcttttgtgagtattgttcagttgttgctcttctttcttctttccttgt
ttctttctcaaaacacagaatgaaccctgggtctgaagtcagctaggcaa
attctctgctggcaatgcctatctttcacacaaatagtcttaaatcccag
tcatccatacctccatcctagtaatgtgtctgtagatactcaaactaact
gaccctgcctgtgtgtttatgaaaaaataacacaggggtgttttaaccat
atataagggcaaagttcccttatatatgttcccagagtcacgactcttct
cattgactacagcatttaagttatagagcctctttcctgggaatttctct
actgaatgaaaggtgactattatcagtcttgtcctccccacagcccaaaa
tttaattaagatatataaagtatgtgaaattaaaatacatacatgtctat
ccctaaagatatagagctctacaaatacatgagtatgtatgatgcatact
atatataaatggtgaatattgtaaaaacctgtgagattttatgtgttcag
aatgaatgtgcaaacggccttctaaattcatcagtaaaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16904346_16905440
seq2: B6Ng01-230E16.g_65_1156

seq1  GAATTCTTAAAAAGTGGAGTCTCATTACTATTTGTAACCAATTGAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAAAAGTGGAGTCTCATTACTATTTGTAACCAATTGAATTTT  50

seq1  TTTCTTTTTGACTATTAGACTCTAGAATTGCTACACATTGTGTTGTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTGACTATTAGACTCTAGAATTGCTACACATTGTGTTGTTGCT  100

seq1  AGTTCTGTTCTGCAATAGTAATTATTAAATGATTGTTTCTAGCAAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTTCTGCAATAGTAATTATTAAATGATTGTTTCTAGCAAATAAA  150

seq1  GGAATCTACAAGGGAATGTGTCTTGCTTTCCTGTCTGTATTTCAATAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTACAAGGGAATGTGTCTTGCTTTCCTGTCTGTATTTCAATAACT  200

seq1  CTGGTGATTTTAGATGCTGTCTAAGTCATCCATGTACAAAACACCGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGATTTTAGATGCTGTCTAAGTCATCCATGTACAAAACACCGATTC  250

seq1  CAGGTTATTTTATTTTATTTTCTATTTACATTATTGATACTGAATACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTATTTTATTTTATTTTCTATTTACATTATTGATACTGAATACACA  300

seq1  GATATGAATTCACTGGGATTAATGATTCATTTTTTGATGAGTAAAAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGAATTCACTGGGATTAATGATTCATTTTTTGATGAGTAAAAAGTG  350

seq1  AATTTTTCTAAAGAGAAGGATGCCATGTGTCCTTTCAAAAATTAATGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTAAAGAGAAGGATGCCATGTGTCCTTTCAAAAATTAATGTGT  400

seq1  CTAGTTTGGGAGAAGAGAATAAAGCAAGAGAAAGGGAAATGAGGAGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTGGGAGAAGAGAATAAAGCAAGAGAAAGGGAAATGAGGAGAAGA  450

seq1  TAGATGGGGATAAAGAAAGGAAGAATAAATGAAGCTGGTACCAGGGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGGGATAAAGAAAGGAAGAATAAATGAAGCTGGTACCAGGGAAAT  500

seq1  AGCTTTTGTGAGTATTGTTCAGTTGTTGCTCTTCTTTCTTCTTTCCTTGT  550
      ||||||||||||||||||                     |||||||||||
seq2  AGCTTTTGTGAGTATTGTNNNNNNNNNNNNNNNNNNNNNTCTTTCCTTGT  550

seq1  TTCTTTCTCAAAACACAGAATGAACCCTGGGTCTGAAGTCAGCTAGGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTCAAAACACAGAATGAACCCTGGGTCTGAAGTCAGCTAGGCAA  600

seq1  ATTCTCTGCTGGCAATGCCTATCTTTCACACAAATAGTCTTAAATCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGCTGGCAATGCCTATCTTTCACACAAATAGTCTTAAATCCCAG  650

seq1  TCATCCATACCTCCATCCTAGTAATGTGTCTGTAGATACTCAAACTAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCATACCTCCATCCTAGTAATGTGTCTGTAGATACTCAAACTAACT  700

seq1  GACCCTGCCTGTGTGTTTATG-AAAAATAACACAGGGGTGTTTTAACCAT  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GACCCTGCCTGTGTGTTTATGAAAAAATAACACAGGGGTGTTTTAACCAT  750

seq1  ATATAAGGGCAAAGTTCCCTTATATATGTTCCCAGAGTCACGACTCTTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGGGCAAAGTTCCCTTATATATGTTCCCAGAGTCACGACTCTTCT  800

seq1  CATTGACTACAGCATTTAAGTTATAGAGCCTCTTTCCTGGGAATTTCTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACTACAGCATTTAAGTTATAGAGCCTCTTTCCTGGGAATTTCTCT  850

seq1  ACTGAATGAAAGGTGACTATTATCAGTCTTGTCCTCCCCACAG-CCAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACTGAATGAAAGGTGACTATTATCAGTCTTGTCCTCCCCACAGCCCAAAA  900

seq1  TTTAATTAAGATATATAAAGTATGTG-AATTAAAATACATACATGTCTAT  947
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTAATTAAGATATATAAAGTATGTGAAATTAAAATACATACATGTCTAT  950

seq1  CCCTAAAGATATAGAGCTCTACAAATACATGAGTATGTATGATGCATACT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAGATATAGAGCTCTACAAATACATGAGTATGTATGATGCATACT  1000

seq1  ATATATAAAATGGTGAATATTTGTAAAAACCTGTGAGATTTTATGTGTTC  1047
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  ATATAT-AAATGGTGAATA-TTGTAAAAACCTGTGAGATTTTATGTGTTC  1048

seq1  CAAGGAAATGAATGTGCAAAACGGCTTCTAAATTCATCAGTAAAAATT  1095
        ||  ||||||||||||||  | ||||||||||||||||||||||||
seq2  --AG--AATGAATGTGCAAACGGCCTTCTAAATTCATCAGTAAAAATT  1092