BAC Information

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BAC

Clone NameB6Ng01-230E24
Chromosome5 (Build37)
Map Location 15,185,644 - 15,205,732
singlet/doubletdoublet
Overlap geneSpeer7-ps1
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230E24.bB6Ng01-230E24.g
ACCGA043209GA043210
length1,122994
definitionB6Ng01-230E24.b B6Ng01-230E24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,204,625 - 15,205,732)(15,185,644 - 15,186,573)
sequence
gaattcaatgaacatttatcatgatttcaattttattgttcagaattaat
gttcaaaaattaagtgattatctgatgttatttatatgaaacatgttggc
atttgttgacaatgatgaattgaaccatctctcttattaaatttcaacaa
ttcaaatgcaatttttatcacttattaacttatctgtctagtagcactaa
ccagctaaaattaattttagaaatctttttcacatgaaataataaataaa
ttgataacaagcttcatagcacatttttgtttgcctttaatgaaactctt
ctgaacacactctgacatttcctatctaattctcatcccacaggtattca
tttattactctattaacatgcacatcagtaatggtgtcttaatctatctc
accgtgctatcaattaggagaatatccttgaacatagggtggggagattt
gataatacacaattttttgaaacttgagatctctaatagtcctttgaata
atgtaatttctaataatttttctatttaaaatgcaccttctgaaaataaa
actctgaaagattaagtataatattaacattaaactcataggtcaccatg
ttggttcatactatgacataaggcttacaaatgcttatgtatgtatgtac
ttattcatttacttacttgtttattttctctaacatcctgctgcactggg
attcctgatgattggatttcagttaccagcatgcagagatcctaaagtta
atgacatattaaacatttagctttactttctattctgaaaattcagttaa
tgctattatttgaactttattgatctttgagacaaatctcactatgtttc
tcaggctggtctcaaatttgtaatattcctggctcagggtgctggctcct
gggattattagacaagtagtagtgtggtggcttgaatatgcttggcccag
atgggcactgttaggaggtatggagtaggtctggccttgttggaggaagg
aagtctgttcatgccttgagaacctcccctcctagcttcctgggaagcca
agtccttctctcaactgggcctcagaatgaagaatgtaagaactcctcag
ctccctccctgaaccatgcctg
gaattcacatcttatttccataaaacatatatgctgtagcatacatacat
acacacaaacacacatacacacatgcacacatacatacacacatacacac
atacacacatacacacatacacacacacacacacacacatacacacatac
acacatacacacatacacacatacaattggtttgtctgtttagtttttga
tgggtttgaggtgtggttgttgttggtttgtttttgaaacagcgtctgtc
tatgtagccctggctgtcatggaatttgctttgtagaccaggctggcctc
aaattcagatattcaccttcttctgtcttctgagaactagtagtcaagtc
tcctcagccagcagtttgaactgttggattaaagcttttggacatttgcc
tactttatcttttctgttaagatagaaaaaaggatagcctattattcaaa
tttactcaaaaaattattttatagtcagtcatggctggaatgcagatata
aaaaaatcagattgtttggaacttaaaaaaaaaagataaaaagtttaaga
aactctttaaaaatttcccttttcaaaactgactggccattcatatagct
catgaatcttaaggtttaacagtataaatgagtagcctcagcttattttc
agtttgtcttaaatttaatttaggtttaatcatgtgtctatagacctgta
ctttttatcatcgtgttatttttccttataacttaactgttaacattatt
agacctcaaaaaaaataaatacatttaaatcggatgagcacaagatgtcc
agattttgttagcaaacatcttgctttttgttactgtagctttctaggca
ccaagtacaccattctggggatttctgtttaccgcgaagtgactaaggaa
ttgcctttgctcatctgggtgcttttacacgtcaagaagaattccagtga
cttgaaaaggaaaggaaaggaaacagattgggatcgtttcggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15204625_15205732
seq2: B6Ng01-230E24.b_45_1166 (reverse)

seq1  CAGGCATGGTTCAGG--AGGAGCTGA-GAGTTC-TAGA-TCTTCA-TCTG  44
      |||||||||||||||   |||||||| |||||| || | |||||| ||||
seq2  CAGGCATGGTTCAGGGAGGGAGCTGAGGAGTTCTTACATTCTTCATTCTG  50

seq1  AAGGCCAGTTG-GAGAA-GAC-TGGCTT-CCAGGAAGCTAGGA-GGGAGG  89
      | | ||||||| ||||| ||| |||||| |||||||||||||| ||||||
seq2  AGGCCCAGTTGAGAGAAGGACTTGGCTTCCCAGGAAGCTAGGAGGGGAGG  100

seq1  -TCTCAAAGCATG-ACAGACTTCCTTCCTCCAACAAGGCCATACCTACTC  137
       |||||| ||||| ||||||||||||||||||||||||||| ||||||||
seq2  TTCTCAAGGCATGAACAGACTTCCTTCCTCCAACAAGGCCAGACCTACTC  150

seq1  CATACCTCCTAACAGTGCCATCCTGGGTTAAGCATATTCAAGCCACCACA  187
      |||||||||||||||||||   |||||  |||||||||||||||||||||
seq2  CATACCTCCTAACAGTGCCCATCTGGGCCAAGCATATTCAAGCCACCACA  200

seq1  CTACTACTTGTCT-ATAATCCCAGGAGCCAGCACCCTGAGCCAGGAATAT  236
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTACTACTTGTCTAATAATCCCAGGAGCCAGCACCCTGAGCCAGGAATAT  250

seq1  TACAAATTTGAGACCAGCCTGAGAAACATAGTGAGATTTGTCTCAAAGAT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATTTGAGACCAGCCTGAGAAACATAGTGAGATTTGTCTCAAAGAT  300

seq1  CAATAAAGTTCAAATAATAGCATTAACTGAATTTTCAGAATAGAAAGTAA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAGTTCAAATAATAGCATTAACTGAATTTTCAGAATAGAAAGTAA  350

seq1  AGCTAAATGTTTAATATGTCATTAACTTTAGGATCTCTGCGTGCTCGTAA  386
      |||||||||||||||||||||||||||||||||||||||| |||| ||||
seq2  AGCTAAATGTTTAATATGTCATTAACTTTAGGATCTCTGCATGCTGGTAA  400

seq1  CTGAAATCCAATCATCAGGAATCCCAGTGCAGCAGGATGTTAGAGAAAAT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATCCAATCATCAGGAATCCCAGTGCAGCAGGATGTTAGAGAAAAT  450

seq1  AAACAAGTAAGTAAATGAATAAGTACATACATACAGAAGCATTTGTAAGC  486
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAACAAGTAAGTAAATGAATAAGTACATACATACATAAGCATTTGTAAGC  500

seq1  CTTATGTCATAGTATGAACCACCGTCGTGACCTATGAGTTTAATGTTAAT  536
      ||||||||||||||||||||| | | ||||||||||||||||||||||||
seq2  CTTATGTCATAGTATGAACCAACATGGTGACCTATGAGTTTAATGTTAAT  550

seq1  ATTATACTTAATCTTTCAGAGTTTTATTTTCAGAAGGTTCATTTTAAATA  586
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTATACTTAATCTTTCAGAGTTTTATTTTCAGAAGGTGCATTTTAAATA  600

seq1  GAAAAATTATTAGAAATTACATTATTCAAAGGACTATTAGAGATCTCAAG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTATTAGAAATTACATTATTCAAAGGACTATTAGAGATCTCAAG  650

seq1  TTTCAAAAAATTGTGTATTAGCAAATCTCCCCACCCTATGTTCAAGGATA  686
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTCAAAAAATTGTGTATTATCAAATCTCCCCACCCTATGTTCAAGGATA  700

seq1  TTCTCCTAATTGATAGCACGATGAGATAGATTAAGACACCATTACTGATG  736
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCTCCTAATTGATAGCACGGTGAGATAGATTAAGACACCATTACTGATG  750

seq1  TGCATGTTAATAGAGTGATAAATGAATACCTGTGGGATGAGAATTAGATA  786
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCATGTTAATAGAGTAATAAATGAATACCTGTGGGATGAGAATTAGATA  800

seq1  GGAAATGTCAGAGTGTGTTCAGAAGAGTTTCATTAAAGGCAAACAAAAAT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGTCAGAGTGTGTTCAGAAGAGTTTCATTAAAGGCAAACAAAAAT  850

seq1  GTGCTATGAAGCTTGTTATCAATTTATTTATTATTTCATGTGAAAAAGAT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTATGAAGCTTGTTATCAATTTATTTATTATTTCATGTGAAAAAGAT  900

seq1  TTCTAAAATTAAGTTTAGCTGGTTAGTGCTACTAGACAAATAAGTTAATA  936
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  TTCTAAAATTAATTTTAGCTGGTTAGTGCTACTAGACAGATAAGTTAATA  950

seq1  AGTGATAAAACTTGCATTTGAATTGTTGAAATTTAATAAGAGAGATGGTT  986
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAAAAATTGCATTTGAATTGTTGAAATTTAATAAGAGAGATGGTT  1000

seq1  CAATTCATTATTGTCAACAACTGCCAACATGTTTCATAAAAATAACATCA  1036
      |||||||| ||||||||||| ||||||||||||||||| |||||||||||
seq2  CAATTCATCATTGTCAACAAATGCCAACATGTTTCATATAAATAACATCA  1050

seq1  GATAATCACTTAATTTTTGAACATTAATTCTGAACAATAAAATTGAAATC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATCACTTAATTTTTGAACATTAATTCTGAACAATAAAATTGAAATC  1100

seq1  ATGATAAAAGATCATTGAATTC  1108
      |||||||| | |||||||||||
seq2  ATGATAAATGTTCATTGAATTC  1122

seq1: chr5_15185644_15186573
seq2: B6Ng01-230E24.g_67_1060

seq1  GAATTCACATCTTATTTCCATAAAACATATATGCTGTAGCATACATACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCTTATTTCCATAAAACATATATGCTGTAGCATACATACAT  50

seq1  ACACACATAC----------------------------------------  60
      ||||||| ||                                        
seq2  ACACACAAACACACATACACACATGCACACATACATACACACATACACAC  100

seq1  ------------------ACACACACACACATACACATATACACATATAC  92
                        ||||||||||||| ||||| ||||||| ||||
seq2  ATACACACATACACACATACACACACACACACACACACATACACACATAC  150

seq1  ACACATACACACATACACACATACAATTGGTTTGTCTGTTTAGTTTTGGT  142
      ||||||||||||||||||||||||||||||||||||||||||||||| | 
seq2  ACACATACACACATACACACATACAATTGGTTTGTCTGTTTAGTTTTTGA  200

seq1  TGGGTTTGAGGTGTGGTTGTTGTTGGATTGTTTTTGAAACAGAGTCTGTC  192
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  TGGGTTTGAGGTGTGGTTGTTGTTGGTTTGTTTTTGAAACAGCGTCTGTC  250

seq1  TATGTAGCCTTGGCTGTCATGGAATTTGCTTTGTAAACCAGGCTGGCCTC  242
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  TATGTAGCCCTGGCTGTCATGGAATTTGCTTTGTAGACCAGGCTGGCCTC  300

seq1  AAATTCAGAGATTCACCTTCTTCTGTCTTCTGAGACCGAATAGTCAAGTC  292
      ||||||||| ||||||||||||||||||||||||| | | ||||||||||
seq2  AAATTCAGATATTCACCTTCTTCTGTCTTCTGAGAACTAGTAGTCAAGTC  350

seq1  TCCACGCCCAGCAGTTTGAATTGTTGGATTAAAGATTTTGGACATTTGTC  342
      ||| |  ||||||||||||| ||||||||||||| ||||||||||||| |
seq2  TCCTCAGCCAGCAGTTTGAACTGTTGGATTAAAGCTTTTGGACATTTGCC  400

seq1  TACTTTATCTTTTCTATTAAGATAGAAAGAA-GATAGCCTATTATTCAAA  391
      ||||||||||||||| |||||||||||| || ||||||||||||||||||
seq2  TACTTTATCTTTTCTGTTAAGATAGAAAAAAGGATAGCCTATTATTCAAA  450

seq1  TTTACTCAGAAAATTATTTTATAGTCAGTCATGGCTGGAATGCAGATATA  441
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCAAAAAATTATTTTATAGTCAGTCATGGCTGGAATGCAGATATA  500

seq1  AAAAAATCAGATTGTTTGGAAC-TGAAAAAAAAAGATAAAAAGTTTAAGA  490
      |||||||||||||||||||||| | |||||||||||||||||||||||||
seq2  AAAAAATCAGATTGTTTGGAACTTAAAAAAAAAAGATAAAAAGTTTAAGA  550

seq1  AACTCTTTAAAAATTTCCCTTTTCAAAACTGGCTGGCCATTCATACAGCT  540
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  AACTCTTTAAAAATTTCCCTTTTCAAAACTGACTGGCCATTCATATAGCT  600

seq1  CATGAATCTTAAGGTTTAACAATATAAGTGAGTAGCCTCAGCTTA-TTTC  589
      ||||||||||||||||||||| ||||| ||||||||||||||||| ||||
seq2  CATGAATCTTAAGGTTTAACAGTATAAATGAGTAGCCTCAGCTTATTTTC  650

seq1  AGTTTGTCTTAAATTTAATTTAGGTTTAATCATGTGTCTATAAACCTGTA  639
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTTTGTCTTAAATTTAATTTAGGTTTAATCATGTGTCTATAGACCTGTA  700

seq1  C-TTTTATCATCGTGTTATTTTTCCTTATAACTTAACTGTTAACATTAAT  688
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTTTTATCATCGTGTTATTTTTCCTTATAACTTAACTGTTAACATTATT  750

seq1  AGACCTTAAAAAAAATAAATACATTTAAATCCGATGAGCACAAGATGTTC  738
      |||||| |||||||||||||||||||||||| |||||||||||||||| |
seq2  AGACCTCAAAAAAAATAAATACATTTAAATCGGATGAGCACAAGATGTCC  800

seq1  AGA-ATTGTTAGCAAACGTCTTGC-TTTTGTTACTGTAGC-TTCTAGGCC  785
      |||  |||||||||||| |||||| ||||||||||||||| |||||||| 
seq2  AGATTTTGTTAGCAAACATCTTGCTTTTTGTTACTGTAGCTTTCTAGGCA  850

seq1  CCAAGTACAGCCATTCTTGGGATTTCTGTTAACGCCGAAGTGACTTAGGA  835
      ||||||||| ||||||| |||||||||||| ||  |||||||||| ||||
seq2  CCAAGTACA-CCATTCTGGGGATTTCTGTTTACCGCGAAGTGACTAAGGA  899

seq1  ATTGCC-TTGCTCATCT-GGTG-TCTTACACGTCACAGAGAATCCAAGTG  882
      |||||| |||||||||| |||| | ||||||||||   ||||| | ||||
seq2  ATTGCCTTTGCTCATCTGGGTGCTTTTACACGTCAAGAAGAATTCCAGTG  949

seq1  ACGTGAAAAAGGAAAGGAAAGGAAACAGAATGGGATCAGTTTCTGGAT  930
      || || ||||||||||||||||||||||| ||||||| ||||| ||||
seq2  ACTTG-AAAAGGAAAGGAAAGGAAACAGATTGGGATC-GTTTC-GGAT  994