BAC Information

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BAC

Clone NameB6Ng01-230J21
Chromosome5 (Build37)
Map Location 61,179,981 - 61,181,073
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546866, Cbfa2t2-ps1, LOC100041498
Downstream geneLOC666597, EG666610, LOC100041524
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230J21.bB6Ng01-230J21.g
ACCGA043433GA043434
length1,1461,105
definitionB6Ng01-230J21.b B6Ng01-230J21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctcacagaaatctttgtctctttgtatataacagtgatactga
ttttttaaattattttttaattaggtattttatttacattttcaatgcta
ccccaaaagtcccccaaaccctccccccactttcctcccccctactccca
cttcttggccatggcattcccttgtactgaggcatataaagtttgcaaga
ccaatgggactctctttccactgatggccaactaggtcatcttctgatac
atatgcagctagagacacgagctccaggaggtactggatagttcatattg
ttgttccacctatagggatgcagacccctttaactccttgggtactttct
ctagctcctccattggagaccctgtgatcgatccaatagctgactgtgag
catccacttctgtgtttgctaggccccagcatagcctcgcaagctatatc
agggtcctttcagcaaaattttgctagtgtgtacaatagtgtgagcattt
ggaggctgattatgggatggatccccgggtatggcagtctctagatggtc
cacccttttgtctcatctccaatctttgtctctgtaactcctttcatggg
tgttttgttcccaattctaagaaggggcaaagtgtccacacttacgtctt
cgttcttcttgagtttcatgtggtttgcaaactgaatcttggatcaagga
actccacataaaaccagagacagtgaaacttatagaggagaaagtgagaa
aaaacctagaagatatgggcacaagggaaaaattcctgaatagaacagca
atggcctgtgctgtaagatcaagaattgacaaatgggacctcataaaatt
gcaaagcttctgtaaggcaaaagacaccgtcaataagactaaaaggccac
caacagattgggaaaggatctttacctatcctaattcagataggggacta
atatccaacatatataaagaactcaagcgtgggctccagaaaatcaaata
accccatttaaatggggcttcagagctaaactaagaatctccacctgaga
atactgaatgctgaaagcactgaaaaatgtcagcatcctatcatcaagaa
tgccatcaaacatccctggagattccacctccatatcatgcatgac

gaattccagacattcaatatgatcagacatctttgtgtctcacaggatca
tctcaaactagggaataaaaggaaacccgagtttgggatgatccttataa
tagcactgaactctggtacaatattttcaatgacttagagagaaaatgtg
ccgaaagaaagcttcccagctgctggcttttggagcaagtcctgagttct
tttctactcactccttggggagagaaggctgactcaaaaataatgtgcct
tcgcccagccctcctactgttagttattggagcaaatccgaagaactttt
cttttctctcctcagggaaagacaggcttgctcataaaaataaagtatgt
atgcccagtatgtctcccacacaggtaaggaggaaagaacattcagtatg
agtggagaacctaggtgaaatcagccccatccaaagataaaatggcaatg
agcaaagcaaagtaaaaacaagaaaacaaacaaacagacaaacaaacaaa
tggagatagctgtattttcatatgcgtgtgtatactccagcatgagtgca
tatatatcaaaaaataatcatgtataagttatgatttgagttacaaagaa
agtgggaagttgcagaataatgtgtgaagtaactagtatgtttttaacta
tttaagtggcaatgccttttatctaaaatacattgcatatatatttaata
tacagttacacagagagtgacataggtacattattgaaattcaccaccca
aaatgaacacgtcgatgaccatactaaaatttttatgcttattaataaga
acatatccttatttatgttttggatttttttgtttaaattttactgatga
tatataataaaaatcatcatttgctaaacttatttgataagtctctactg
attaatatatatttgcttgtttgtttcaattattgttctattttgaagag
ctttattacattttagaatagtagtgtgttgtagaacattgttttataat
gatattcctctaattcctatagccttttcctgccactttcttgacttttg
ttcttaataaagaagaatgtttttgaactgtatggaactgctaacttgat
ggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_61179981_61181073
seq2: B6Ng01-230J21.g_64_1168 (reverse)

seq1  TCACCAACAAG-TAGCAGTTCAATACAGT--CAAAACATTCT--CTTATT  45
      |||||| |||| ||||||||| |||||||   ||||||||||   |||||
seq2  TCACCATCAAGTTAGCAGTTCCATACAGTTCAAAAACATTCTTCTTTATT  50

seq1  AAGA--CAAAGTCAAGAAAGTGGCAGGAAAA-GCTATA-GAATTAGA-GA  90
      ||||   |||||||||||||||||||||||| |||||| |||||||| ||
seq2  AAGAACAAAAGTCAAGAAAGTGGCAGGAAAAGGCTATAGGAATTAGAGGA  100

seq1  ATATCATTATAAAACAATGTTCTACAACACACTACTA-TCTAAAATGT-A  138
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  ATATCATTATAAAACAATGTTCTACAACACACTACTATTCTAAAATGTAA  150

seq1  TAAAGCTCTTCAAAATAGAACAATAATTGAAACAAACAAGCAAATATATA  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTCTTCAAAATAGAACAATAATTGAAACAAACAAGCAAATATATA  200

seq1  TTAATCAGTAGAGACTTATCAAATAAGTTTAGCAAATGATGATTTTTATT  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAGTAGAGACTTATCAAATAAGTTTAGCAAATGATGATTTTTATT  250

seq1  ATATATCATCAGTAAAATTTAAACAAAAAAATCCAAAACATAAATAAGGA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCATCAGTAAAATTTAAACAAAAAAATCCAAAACATAAATAAGGA  300

seq1  TATGTTCTTATTAATAAGCATAAAAATTTTAGTATGGTCATCGACGTGTT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCTTATTAATAAGCATAAAAATTTTAGTATGGTCATCGACGTGTT  350

seq1  CATTTTGGGTGGTGAATTTCAATAATGTACCTATGTCACTCTCTGTGTAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGGGTGGTGAATTTCAATAATGTACCTATGTCACTCTCTGTGTAA  400

seq1  CTGTATATTAAATATATATGCAATGTATTTTAGATAAAAGGCATTGCCAC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATATTAAATATATATGCAATGTATTTTAGATAAAAGGCATTGCCAC  450

seq1  TTAAATAGTTAAAAACATACTAGTTACTTCACACATTATTCTGCAACTTC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGTTAAAAACATACTAGTTACTTCACACATTATTCTGCAACTTC  500

seq1  CCACTTTCTTTGTAACTCAAATCATAACTTATACATGATTATTTTTTGAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTCTTTGTAACTCAAATCATAACTTATACATGATTATTTTTTGAT  550

seq1  ATATATGCACTCATGCTGGAGTATACACACGCATATGAAAATACAGCTAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGCACTCATGCTGGAGTATACACACGCATATGAAAATACAGCTAT  600

seq1  CTCCATTTGTTTGTTTGTCTGTTTGTTTGTTTTCTTGTTTTTACTTTGCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTGTTTGTTTGTCTGTTTGTTTGTTTTCTTGTTTTTACTTTGCT  650

seq1  TTGCTCATTGCCATTTTATCTTTGGATGGGGCTGATTTCACCTAGGTTCT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCATTGCCATTTTATCTTTGGATGGGGCTGATTTCACCTAGGTTCT  700

seq1  CCACTCATACTGAATGTTCTTTCCTCCTTACCTGTGTGGGAGACATACTG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCATACTGAATGTTCTTTCCTCCTTACCTGTGTGGGAGACATACTG  750

seq1  GGCATACATACTTTATTTTTATGAGCAAGCCTGTCTTTCCCTGAGGAGAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATACATACTTTATTTTTATGAGCAAGCCTGTCTTTCCCTGAGGAGAG  800

seq1  AAAAGAAAAGTTCTTCGGATTTGCTCCAATAACTAACAGTAGGAGGGCTG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGTTCTTCGGATTTGCTCCAATAACTAACAGTAGGAGGGCTG  850

seq1  GGCGAAGGCACATTATTTTTGAGTCAGCCTTCTCTCCCCAAGGAGTGAGT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAAGGCACATTATTTTTGAGTCAGCCTTCTCTCCCCAAGGAGTGAGT  900

seq1  AGAAAAGAACTCAGGACTTGCTCCAAAAGCCAGCAGCTGGGAAGCTTTCT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAACTCAGGACTTGCTCCAAAAGCCAGCAGCTGGGAAGCTTTCT  950

seq1  TTCGGCACATTTTCTCTCTAAGTCATTGAAAATATTGTACCAGAGTTCAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGCACATTTTCTCTCTAAGTCATTGAAAATATTGTACCAGAGTTCAG  1000

seq1  TGCTATTATAAGGATCATCCCAAACTCGGGTTTCCTTTTATTCCCTAGTT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTATAAGGATCATCCCAAACTCGGGTTTCCTTTTATTCCCTAGTT  1050

seq1  TGAGATGATCCTGTGAGACACAAAGATGTCTGATCATATTGAATGTCTGG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGATCCTGTGAGACACAAAGATGTCTGATCATATTGAATGTCTGG  1100

seq1  AATTC  1093
      |||||
seq2  AATTC  1105


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