BAC Information

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BAC

Clone NameB6Ng01-230J23
Chromosome5 (Build37)
Map Location 124,225,759 - 124,421,139
singlet/doubletdoublet
Overlap geneKntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62
Upstream geneAnapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2
Downstream geneHip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230J23.bB6Ng01-230J23.g
ACCGA043437GA043438
length9811,092
definitionB6Ng01-230J23.b B6Ng01-230J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,420,161 - 124,421,139)(124,225,759 - 124,226,834)
sequence
gaattctcttcctgtctgcctggttgagtggctgcttaccttgcagctag
ctcagatgctacttctctagggaagcttccctgactcctccaccctgacc
tatgtctcagtatctcaccattctatttcataacaccagtcttccacgtg
actacttaagatctgtgttccctccctaccagaacgcaagcagggcttac
ttacccagttatctcccagggcctccaaagctacatggtgtgctcacaat
gaatttgtatgtgcgagggaccagggatggaatccagggccttgtgcatg
ctgggaaagtcgttctaaccatgagctctatttccagtcctctttctact
ttgttttgaagtcaggtctcactagagttgcttgagttggcactgaactc
cctctgtaccctaagtttgccatccttgggcctggcccccagtaggtagg
gttacagatcctgtctgtgttttaagcgttacctggaggagaacccacag
gtcctccttaactgggctgactcatgtgtgctgccacttgatagactcct
ctggaaggccaccccatcttaaccctggtgcatgtgtctggcatcttggt
tgattttattcattttgctcttcggaacgtgagggttactgattagaatc
ccggaggcttaagtggtgggccttcctgcaaggtgcaggaccaaaatcac
atcaactgtcttttcttttgttttgtttttccgagtcagggtttctctgt
tcagccctggctgtcctggaactcactctgtagaccaggctggcctcccg
agtgctgggattaaaggtgtacgccaccacgcccggcttcacatcaactg
tcttaaagggacaggaagctacagcattgattctagcaagaggcttacaa
atcaggaacacagagaagccatgggtcactgtttcaaagtgtgacaagct
ttccacggcggggcccttccgctcttgggct
gaattcaatatctacacaattccccttggaaaacctttgttcctggttta
aaaatgaagtgattccgtttgtgaggaggattgtgcccgaaggacaagtg
agttgccttccgtatttctactcttacaaatttaacttcatgtaatgcgt
catacttggttactggagaagccctgtacaaagatgatagagctggacgc
agtgggagacacttcaatctcagcactcagaaggatttctgggaatttga
gtccagtctaaactccatagcaggttacaggccagcatgagctacagagt
gtgtccctgcttcaaaagaaaaaaccagcaaaggtggtgttagagtgtta
ccatgcttaaggtcgtgggttcagtgtctagccatgtaactgatcaataa
ctcctaagagaacattatagggctagagaggtggctcagtgattaaaagt
acattctactctttcaaaagacctgggttcagtttccagcaccatacaac
ctacagttccagtcccaagagatctgatgtgcacaccccccttccccaca
catatttttgaaaaagccttaaaatttgattatgggatttttttgtgtgt
gtgtgtgtgagaattttatccttaaatggtttttctgtttcagaacattc
ttgcaaaatggctagaacaagcatcaaggaacctagagttaactgataag
gtgatgttcctctaacaaaggtgacaatgacatttgcacccctacagtag
cctcagacttgatttttaatggttttcatatttttaaaggcaaaactggc
ccagaaaatggacttcagctggcagaggtgttcttcactgcaaaaaaaac
agaccggtttggattcgcatcttcttggccactggatttccttggtatga
tgtagagacaaattttatgattgaattgtaaccatccaagcagagtttgc
ctgtggtgtcttctgtttcaagttccacactgaaagggaaagtccttttc
ttcttgtcttgcttggattcttataacagctcaacttgttgcagtgtgtc
tctcctccctgcactagcccaaatggaaaaccataggacagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_124420161_124421139
seq2: B6Ng01-230J23.b_45_1025 (reverse)

seq1  AGCCCAAGAGCG--AAGGCCCCGCCGTGGAAGCCTTGTCACACTCTG-AA  47
      ||||||||||||  | |||||||||||||||  ||||||||||| || ||
seq2  AGCCCAAGAGCGGAAGGGCCCCGCCGTGGAAAGCTTGTCACACTTTGAAA  50

seq1  CAGTGACCCATGGCTTCTCCTGTGTCCCTGATTTGTAAGCCTCTTGCTAG  97
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  CAGTGACCCATGGCTTCT-CTGTGTTCCTGATTTGTAAGCCTCTTGCTAG  99

seq1  AATCATGCCTGTAGCTTCCTGTCCC-TTAAGACAGTTGATGTGAAGCCGG  146
      |||||   ||||||||||||||||| ||||||||||||||||||||||||
seq2  AATCAATGCTGTAGCTTCCTGTCCCTTTAAGACAGTTGATGTGAAGCCGG  149

seq1  GCGGTGGTGGCGTACACCTTTAATCCCAGCACTCGGGAGGCCAGCCTGGT  196
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GC-GTGGTGGCGTACACCTTTAATCCCAGCACTCGGGAGGCCAGCCTGGT  198

seq1  CTACAGAGTGAGTTCCAGGACAGCCAGGGCTGAACAGAGAAACCCTGACT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGTGAGTTCCAGGACAGCCAGGGCTGAACAGAGAAACCCTGACT  248

seq1  CGGAAAAACAAAACAAAAGAAAAGACAGTTGATGTGATTTTGGTCCTGCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAAAACAAAACAAAAGAAAAGACAGTTGATGTGATTTTGGTCCTGCA  298

seq1  CCTTGCAGGAAGGCCCACCACTTAAGCCTCCGGGATTCTAATCAGTAACC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAGGAAGGCCCACCACTTAAGCCTCCGGGATTCTAATCAGTAACC  348

seq1  CTCACGTTCCGAAGAGCAAAATGAATAAAATCAACCAAGATGCCAGACAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGTTCCGAAGAGCAAAATGAATAAAATCAACCAAGATGCCAGACAC  398

seq1  ATGCACCAGGGTTAAGATGGGGTGGCCTTCCAGAGGAGTCTATCAAGTGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCAGGGTTAAGATGGGGTGGCCTTCCAGAGGAGTCTATCAAGTGG  448

seq1  CAGCACACATGAGTCAGCCCAGTTAAGGAGGACCTGTGGGTTCTCCTCCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACATGAGTCAGCCCAGTTAAGGAGGACCTGTGGGTTCTCCTCCA  498

seq1  GGTAACGCTTAAAACACAGACAGGATCTGTAACCCTACCTACTGGGGGCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACGCTTAAAACACAGACAGGATCTGTAACCCTACCTACTGGGGGCC  548

seq1  AGGCCCAAGGATGGCAAACTTAGGGTACAGAGGGAGTTCAGTGCCAACTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAAGGATGGCAAACTTAGGGTACAGAGGGAGTTCAGTGCCAACTC  598

seq1  AAGCAACTCTAGTGAGACCTGACTTCAAAACAAAGTAGAAAGAGGACTGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTCTAGTGAGACCTGACTTCAAAACAAAGTAGAAAGAGGACTGG  648

seq1  AAATAGAGCTCATGGTTAGAACGACTTTCCCAGCATGCACAAGGCCCTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGCTCATGGTTAGAACGACTTTCCCAGCATGCACAAGGCCCTGG  698

seq1  ATTCCATCCCTGGTCCCTCGCACATACAAATTCATTGTGAGCACACCATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATCCCTGGTCCCTCGCACATACAAATTCATTGTGAGCACACCATG  748

seq1  TAGCTTTGGAGGCCCTGGGAGATAACTGGGTAAGTAAGCCCTGCTTGCGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTGGAGGCCCTGGGAGATAACTGGGTAAGTAAGCCCTGCTTGCGT  798

seq1  TCTGGTAGGGAGGGAACACAGATCTTAAGTAGTCACGTGGAAGACTGGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAGGGAGGGAACACAGATCTTAAGTAGTCACGTGGAAGACTGGTG  848

seq1  TTATGAAATAGAATGGTGAGATACTGAGACATAGGTCAGGGTGGAGGAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAATAGAATGGTGAGATACTGAGACATAGGTCAGGGTGGAGGAGT  898

seq1  CAGGGAAGCTTCCCTAGAGAAGTAGCATCTGAGCTAGCTGCAAGGTAAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGCTTCCCTAGAGAAGTAGCATCTGAGCTAGCTGCAAGGTAAGC  948

seq1  AGCCACTCAACCAGGCAGACAGGAAGAGAATTC  979
      |||||||||||||||||||||||||||||||||
seq2  AGCCACTCAACCAGGCAGACAGGAAGAGAATTC  981

seq1: chr5_124225759_124226834
seq2: B6Ng01-230J23.g_68_1159

seq1  GAATTCAATATCTACACAATTCCCCTTGGAAAACCTTTGTTCCTGGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATCTACACAATTCCCCTTGGAAAACCTTTGTTCCTGGTTTA  50

seq1  AAAATGAAGTGATTCCGTTTGTGAGGAGGATTGTGCCCGAAGGACAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAGTGATTCCGTTTGTGAGGAGGATTGTGCCCGAAGGACAAGTG  100

seq1  AGTTGCCTTCCGTATTTCTACTCTTACAAATTTAACTTCATGTAATGCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCTTCCGTATTTCTACTCTTACAAATTTAACTTCATGTAATGCGT  150

seq1  CATACTTGGTTACTGGAGAAGCCCTGTACAAAGATGATAGAGCTGGACGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTGGTTACTGGAGAAGCCCTGTACAAAGATGATAGAGCTGGACGC  200

seq1  AGTGGGAGACACTTCAATCTCAGCACTCAGAAGGATTTCTGGGAATTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGACACTTCAATCTCAGCACTCAGAAGGATTTCTGGGAATTTGA  250

seq1  GTCCAGTCTAAACTCCATAGCAGGTTACAGGCCAGCATGAGCTACAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTCTAAACTCCATAGCAGGTTACAGGCCAGCATGAGCTACAGAGT  300

seq1  GTGTCCCTGCTTCAAAAGAAAAAACCAGCAAAGGTGGTGTTAGAGTGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCTGCTTCAAAAGAAAAAACCAGCAAAGGTGGTGTTAGAGTGTTA  350

seq1  CCATGCTTAAGGTCGTGGGTTCAGTGTCTAGCCATGTAACTGATCAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTTAAGGTCGTGGGTTCAGTGTCTAGCCATGTAACTGATCAATAA  400

seq1  CTCCTAAGAGAACATTATAGGGCTAGAGAGGTGGCTCAGTGATTAAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAGAGAACATTATAGGGCTAGAGAGGTGGCTCAGTGATTAAAAGT  450

seq1  ACATTCTACTCTTTCAAAAGACCTGGGTTCAGTTTCCAGCACCATACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTACTCTTTCAAAAGACCTGGGTTCAGTTTCCAGCACCATACAAC  500

seq1  CTACAGTTCCAGTCCCAAGAGATCTGATGTGCACACCCCCCTTCCCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTTCCAGTCCCAAGAGATCTGATGTGCACACCCCCCTTCCCCACA  550

seq1  CATATTTTTGAAAAAGCCTTAAAATTTGATTATGGGATTTTTTTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTTGAAAAAGCCTTAAAATTTGATTATGGGATTTTTTTGTGTGT  600

seq1  GTGTGTGTGAGAATTTTATCCTTAAATGGTTTTTCTGTTTCAGAACATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGAGAATTTTATCCTTAAATGGTTTTTCTGTTTCAGAACATTC  650

seq1  TTGCAAAATGGCTAGAACAAGCATCAAGGAACCTAGAGTTAACTGATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAATGGCTAGAACAAGCATCAAGGAACCTAGAGTTAACTGATAAG  700

seq1  GTGATGTTCCTCTAACAAAGGTGACAATGACATTTGCACCCCTACAGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTTCCTCTAACAAAGGTGACAATGACATTTGCACCCCTACAGTAG  750

seq1  CCTCAGACTTGATTTTTAATGGTTTTCATATTTTTAAAGGC-AAACTGG-  798
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  CCTCAGACTTGATTTTTAATGGTTTTCATATTTTTAAAGGCAAAACTGGC  800

seq1  CCAGAAAATGGACTTCAGCTGGCAGAGGTGTTCTTCACTGCAGAAAAAAC  848
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCAGAAAATGGACTTCAGCTGGCAGAGGTGTTCTTCACTGCAAAAAAAAC  850

seq1  AGACCGGTTTGGATTCGCATCTTCTTGG-CACTGGATTTCCTTGGTATGA  897
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGACCGGTTTGGATTCGCATCTTCTTGGCCACTGGATTTCCTTGGTATGA  900

seq1  TGTAGAGACAAATTTTATGATGAAATTGTAA-CATCCAGGCAGAGTTTGC  946
      |||||||||||||||||||||  |||||||| |||||| |||||||||||
seq2  TGTAGAGACAAATTTTATGATTGAATTGTAACCATCCAAGCAGAGTTTGC  950

seq1  CTGT-GTGTCTTTCTGTTTC-AGT---CCACTGAAAGGGAAAGTCC-TTT  990
      |||| ||||| ||||||||| |||    |||||||||||||||||| |||
seq2  CTGTGGTGTC-TTCTGTTTCAAGTTCCACACTGAAAGGGAAAGTCCTTTT  999

seq1  CTTCTTTTC-TGC-TGGATCTATTACAAC--CTCAAC-TGTTGCAGTGTG  1035
      |||||| || ||| ||||| | ||| |||  |||||| ||||||||||||
seq2  CTTCTTGTCTTGCTTGGAT-TCTTATAACAGCTCAACTTGTTGCAGTGTG  1048

seq1  -GTCTCTACACTGAACTAGCCAAAAT-GAAAACCATA-GACAGT  1076
        ||||  | ||| ||||||| |||| |||||||||| ||||||
seq2  TCTCTCCTCCCTGCACTAGCCCAAATGGAAAACCATAGGACAGT  1092