BAC Information

Click to search

BAC

Clone NameB6Ng01-230K21
Chromosome5 (Build37)
Map Location 30,854,845 - 31,002,054
singlet/doubletdoublet
Overlap geneKcnk3, 4930471M23Rik, Cenpa
Upstream geneLOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik
Downstream geneDpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230K21.bB6Ng01-230K21.g
ACCGA043481GA043482
length1,1041,079
definitionB6Ng01-230K21.b B6Ng01-230K21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,854,845 - 30,855,948)(31,000,988 - 31,002,054)
sequence
gaattccttgcctctcttcctcctcctctccacgccccatccctgtgtgt
gaatctgtgtaagccagaggacaacctcagaaatctttcctcaggtacca
cacaggtcaacgtttgaagattgccgaggaggctaagctggctggccagc
cctggagagttgcgagtctctgtcataccagcgctggaactgaagccctg
ctgccatgcctggcttcttctacattctaagtccataccttataataagg
tgtgctggctagttttgtgtcaacttgacacagctggagttatcacagag
aaaggagcttcagttgaggaaatgcctccatgagatccaactgtaagtca
ttttctcaattagtgatcaagggggaaaggccccttgtgggtgggaccat
ctctgggctggtagtcttgggttttataagagagcaggctgagcaagcca
ggggaagcaagccagtaaagaacatccctccatggcctctgcatcagctc
ctgcttcctgacctgcttgagttccagtcctgcatcctttggtgatcaac
agcagtatggaaatgtaagccgaataaaccccttcctccccaacttgctt
cttggtcatgatgtttgtgcaggaatagaaaccctgactaagacataagg
taagcaccttaccaagtgtctcagttagggttttactgctgtgaacagac
accatgaccaacgcgactcttataagacaacattaaattagggctggctt
acaggttcagaggttcagtccattatcatcaaggtgggggcatggcagca
tccaggcaggtatagtgcaggaggatctgagagttctacatcttcatctg
aaaggctgatagcagaatactggcttccaggcagctaaagtgagggtctt
aagcccacgcccacaatggcacacctactccaacagggcacaccttctaa
tagtgccactcccttggctgagcatatacaaccattataccaatccagct
agctccctggtgtgctctgccctctctgatactcctagcttaatccacct
ccccacagtcaccctttctactggagtgctgtcaccctaccttctgctaa
ggtg
gaattcccagagaaagttaacttgggaaagactcaccctcagtctgtgct
ctccatcctaccggatgaccaatggggagaagggggagagttagatgagc
atcagggctttccctttctctacttcctaaaggcacaatgatgctggcaa
tgccctgccttctctatcagcacagactgcagcccctcagaccaaaacaa
accctgccttgctaaggcgaaaactaacacaacagctgagggtgtccatc
cgcctgcctgcctgcctgcctgtctgcctgtgtacctgtctgtctgcaac
aaggtctcaacaagcccaggctggtctagagcttgctgtgtggccaagga
taactgagaacttctgctcctcttactcccaccttctgagagctgggatt
tctgacatgctcgaccacacatggctgaagagatgtaattttgtcacttt
caaaagaataaaggggtctgctcagctgcgccgttatatgtattctttag
aaaataggtatgtgacagtcatgtgttagtgctccagccactaattttct
ttgtgaattagaaattactttggctatcagctatcattaatatgtgcagt
tgataacattctagagacagtagcaaaaacaaaaacaaaaaacaaaaaca
ccatcaccaaaagacaaacaaccccccccacacacacaaaaaaccaaaaa
ggaaaaaccaagaccatgtgtgcatacttagagagaaagaaagaagagag
agagataggtagaaagaaagagagacagagagagaggggaagaaagaaag
gaaggaaggaaggaaggaagtgaaggtactgaaggtatgatagtaagaaa
gaaagaaagaatgaaagatatgaagatagaaaggaaggaaggagaaagaa
agaagtcgattttctccaatacagcagttcccaggcattttggtcttagg
actttttgcatatcttaaaaaattattggagggtgtcaaaaagcttttgc
tcctgtgggctacattctcctaacaattcaccaacaaaaatattctcata
attaaaaaaaatgtgtgggaaatgatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_30854845_30855948
seq2: B6Ng01-230K21.b_43_1146

seq1  GAATTCCTTGCCTCTCTTCCTCCTCCTCTCCACGCCCCATCCCTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCCTCTCTTCCTCCTCCTCTCCACGCCCCATCCCTGTGTGT  50

seq1  GAATCTGTGTAAGCCAGAGGACAACCTCAGAAATCTTTCCTCAGGTACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGTGTAAGCCAGAGGACAACCTCAGAAATCTTTCCTCAGGTACCA  100

seq1  CACAGGTCAACGTTTGAAGATTGCCGAGGAGGCTAAGCTGGCTGGCCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTCAACGTTTGAAGATTGCCGAGGAGGCTAAGCTGGCTGGCCAGC  150

seq1  CCTGGAGAGTTGCGAGTCTCTGTCATACCAGCGCTGGAACTGAAGCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGAGTTGCGAGTCTCTGTCATACCAGCGCTGGAACTGAAGCCCTG  200

seq1  CTGCCATGCCTGGCTTCTTCTACATTCTAAGTCCATACCTTATAATAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATGCCTGGCTTCTTCTACATTCTAAGTCCATACCTTATAATAAGG  250

seq1  TGTGCTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAG  300

seq1  AAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGTAAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGTAAGTCA  350

seq1  TTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCAT  400

seq1  CTCTGGGCTGGTAGTCTTGGGTTTTATAAGAGAGCAGGCTGAGCAAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGCTGGTAGTCTTGGGTTTTATAAGAGAGCAGGCTGAGCAAGCCA  450

seq1  GGGGAAGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCTC  500

seq1  CTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGCATCCTTTGGTGATCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGCATCCTTTGGTGATCAAC  550

seq1  AGCAGTATGGAAATGTAAGCCGAATAAACCCCTTCCTCCCCAACTTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTATGGAAATGTAAGCCGAATAAACCCCTTCCTCCCCAACTTGCTT  600

seq1  CTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAGACATAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAGACATAAGG  650

seq1  TAAGCACCTTACCAAGTGTCTCAGTTAGGGTTTTACTGCTGTGAACAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACCTTACCAAGTGTCTCAGTTAGGGTTTTACTGCTGTGAACAGAC  700

seq1  ACCATGACCAACGCGACTCTTATAAGACAACATTAAATTAGGGCTGGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGACCAACGCGACTCTTATAAGACAACATTAAATTAGGGCTGGCTT  750

seq1  ACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGTGGGGGCATGGCAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGTGGGGGCATGGCAGCA  800

seq1  TCCAGGCAGGTATAGTGCAGGAGGATCTGAGAGTTCTACATCTTCATCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCAGGTATAGTGCAGGAGGATCTGAGAGTTCTACATCTTCATCTG  850

seq1  -AAGGCTGATAGCAGAATACTGGCTTCCAGGCAGCTAAAGTGAGGGTCTT  899
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGATAGCAGAATACTGGCTTCCAGGCAGCTAAAGTGAGGGTCTT  900

seq1  AAAGCCCACGCCCACAATGGCACACCTACTCCAACAGGGCCACACCTTCT  949
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  -AAGCCCACGCCCACAATGGCACACCTACTCCAACAGGG-CACACCTTCT  948

seq1  AATAGTGCCACTCCCTGGGCTGAGCATATACAAACCATTATACCAATCCA  999
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  AATAGTGCCACTCCCTTGGCTGAGCATATAC-AACCATTATACCAATCCA  997

seq1  GCTAGCTCCCTGGTGTGCTCTGCCCTCTCTGATACTCCTTAGCTTAAATC  1049
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  GCTAGCTCCCTGGTGTGCTCTGCCCTCTCTGATACTCC-TAGCTT-AATC  1045

seq1  CAC--TCCCACAGTCACCCTTTCTACT-GAGTGCTGGTCACCCTA-CTTC  1095
      |||   ||||||||||||||||||||| ||||||| ||||||||| ||||
seq2  CACCTCCCCACAGTCACCCTTTCTACTGGAGTGCT-GTCACCCTACCTTC  1094

seq1  TGCT-AGGTG  1104
      |||| |||||
seq2  TGCTAAGGTG  1104

seq1: chr5_31000988_31002054
seq2: B6Ng01-230K21.g_71_1149 (reverse)

seq1  TTCATCATTTCCAACA-ATTTTTTTTAATTCTG-GATTAATTTTTTGTGT  48
      |||||||||||| ||| ||||||||||||| || || || |||| |  ||
seq2  TTCATCATTTCCCACACATTTTTTTTAATTATGAGAATATTTTTGTTGGT  50

seq1  TGATTGTTAGTA-AATGTAGCCCACATGAGCAAAAGCTTTTTGACACACT  97
        |||||||| | ||||||||||||| |||||||||||||||||||| ||
seq2  GAATTGTTAGGAGAATGTAGCCCACAGGAGCAAAAGCTTTTTGACACCCT  100

seq1  -CAATAA-TTTTTAAGGTATGCAAAAGGTCCTAAGACCAAAATGCCTGGG  145
       |||||| |||||||| ||||||||| |||||||||||||||||||||||
seq2  CCAATAATTTTTTAAGATATGCAAAAAGTCCTAAGACCAAAATGCCTGGG  150

seq1  AACTGCTGTATTGG-GAAAATCGACTTCTTTCTTTCT-CTTTCTTTCTTT  193
      |||||||||||||| |||||||||||||||||||||| ||| ||| ||||
seq2  AACTGCTGTATTGGAGAAAATCGACTTCTTTCTTTCTCCTTCCTTCCTTT  200

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC-TTCCTTC-  241
      || ||||  | |||||| ||||||||||||||||| || || | ||||| 
seq2  CTATCTTCATATCTTTCATTCTTTCTTTCTTTCTTACTATCATACCTTCA  250

seq1  CTTCCTTC-CTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTCCCCTCTCTC  290
       | ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTCACTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTCCCCTCTCTC  300

seq1  TCTGTCTCTCTTTCTTTCTACCTTTCTCTCTCTCTTCTTTCTTTCTCTCT  340
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTGTCTCTCTTTCTTTCTACCTATCTCTCTCTCTTCTTTCTTTCTCTCT  350

seq1  AAGTATGCACACATGGTCTTGGTTTTTCCTTTTTGG-TTTTTGTGTGTGT  389
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGTATGCACACATGGTCTTGGTTTTTCCTTTTTGGTTTTTTGTGTGTGT  400

seq1  GGGGGGGGTTGTTTGTCTTTTGGTGATGGTGTTTTTGTTTTTTG-TTTTG  438
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGGGGGGGTTGTTTGTCTTTTGGTGATGGTGTTTTTGTTTTTTGTTTTTG  450

seq1  TTTTTGCTACTGTCTCTAGAATGTTATCAACTGCACATATTAATGATAGC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTACTGTCTCTAGAATGTTATCAACTGCACATATTAATGATAGC  500

seq1  TGATAGCCAAAGTAATTTCTAATTCACAAAGAAAATTAGTGGCTGGAGCA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCCAAAGTAATTTCTAATTCACAAAGAAAATTAGTGGCTGGAGCA  550

seq1  CTAACACATGACTGTCACATACCTATTTTCTAAAGAATACATATAACGGC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACATGACTGTCACATACCTATTTTCTAAAGAATACATATAACGGC  600

seq1  GCAGCTGAGCAGACCCCTTTATTCTTTTGAAAGTGACAAAATTACATCTC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGAGCAGACCCCTTTATTCTTTTGAAAGTGACAAAATTACATCTC  650

seq1  TTCAGCCATGTGTGGTCGAGCATGTCAGAAATCCCAGCTCTCAGAAGGTG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCATGTGTGGTCGAGCATGTCAGAAATCCCAGCTCTCAGAAGGTG  700

seq1  GGAGTAAGAGGAGCAGAAGTTCTCAGTTATCCTTGGCCACACAGCAAGCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAAGAGGAGCAGAAGTTCTCAGTTATCCTTGGCCACACAGCAAGCT  750

seq1  CTAGACCAGCCTGGGCTTGTTGAGACCTTGTTGCAGACAGACAGGTACAC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCAGCCTGGGCTTGTTGAGACCTTGTTGCAGACAGACAGGTACAC  800

seq1  AGGCAGACAGGCAGGCAGGCAGGCAGGCGGATGGACACCCTCAGCTGTTG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGACAGGCAGGCAGGCAGGCAGGCGGATGGACACCCTCAGCTGTTG  850

seq1  TGTTAGTTTTCGCCTTAGCAAGGCAGGGTTTGTTTTGGTCTGAGGGGCTG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTTTTCGCCTTAGCAAGGCAGGGTTTGTTTTGGTCTGAGGGGCTG  900

seq1  CAGTCTGTGCTGATAGAGAAGGCAGGGCATTGCCAGCATCATTGTGCCTT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGTGCTGATAGAGAAGGCAGGGCATTGCCAGCATCATTGTGCCTT  950

seq1  TAGGAAGTAGAGAAAGGGAAAGCCCTGATGCTCATCTAACTCTCCCCCTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGTAGAGAAAGGGAAAGCCCTGATGCTCATCTAACTCTCCCCCTT  1000

seq1  CTCCCCATTGGTCATCCGGTAGGATGGAGAGCACAGACTGAGGGTGAGTC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATTGGTCATCCGGTAGGATGGAGAGCACAGACTGAGGGTGAGTC  1050

seq1  TTTCCCAAGTTAACTTTCTCTGGGAATTC  1067
      |||||||||||||||||||||||||||||
seq2  TTTCCCAAGTTAACTTTCTCTGGGAATTC  1079