BAC Information

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BAC

Clone NameB6Ng01-230M16
Chromosome5 (Build37)
Map Location 80,972,638 - 81,112,345
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230M16.bB6Ng01-230M16.g
ACCGA043566GA043567
length1,1301,170
definitionB6Ng01-230M16.b B6Ng01-230M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,972,638 - 80,973,787)(81,111,178 - 81,112,345)
sequence
gaattctcttgttttgagtcttatataggctgcattattgtgatagaaag
gacagagatttcttttgaaaggtatcaaattttcttctaaaacagagaac
ttcaaagtgattttgaactcattgttcattttatttgatcaacagagatg
aactacaagaccaaattcatgtctactaaaataacattgagctcacaagg
ctgctaggtttttttttttttaagaaaatgatggtctatgcagagatgtc
ttcaaaacttggtgagctacaacaattatgataataaagctcatgtaaaa
tggcagatgttaattttacttaatgaaaaagcagaatatttaaagcagaa
tcttcattatcagtgctcatgtaagccattatttaccttactaatgatga
atgggatacatgttttctccaagactgataaagtcaatgctgtaaaaagt
tttaaatgagtagcctacattttatattttaaaagtttccaagaacacag
gacatataatacatgggtatgaaatccttaatgttttcttgtaactgtat
ttgcttcaacaaaaagatcatgacaaatgcataatatttctcagatacct
gtaacggtacatcctggtacagacacaatgatacaagcatcctttacaga
cctcgtttcttctttatatcgggtaacaattctttctgtgtaccaggcat
ctctatattgtcttgatttctgctaagaataattttcaaagattatcaca
gaaactagttcttcttttctttaaagacttgtttaccttatttatgtatg
ttttgcctgcatgtgtgtatacctgccacctatgtttccagtggttttgg
agactaaaaagtgattggattctgtggaactgaagagatacagttgtgag
ctactggcgacaaactcacatgctctagaagaacagcaagtacttcttag
tcaccaaaacactcttcaatctctgtaccttcctttacttaatctttcaa
tacttatgatatctttattttatgtagatgaagtatttctctggtcaaaa
ttaacagcataatgtcagttactatactttaatttcaaattggctgttga
gtttttaagtaggtaagtaaacaaatgttc

gaattcagatcagcgaccatgttagtctggttcgtttgttccttcctaag
ctattaaacacacacaagccacaaacacacacacgtgaacacgcccatgc
acaggcacacacttcagagttagatgctctacaactttttcttcttccct
ctcttcttctccattttaaatgtagaaaggtaaattatatttcttctacc
caatttttaccaaaatggtgttacatctaacttatgcctagtttgtttgt
ttgatttttgaggcaggtttacatgtagcctacattgtcctcaaagtcac
catgtagctccggctggccttgaactgcccctcctgcttccacctgcaaa
attctgagattgcaggaatttaacatcacactcagatcacttttttttct
ttattagatattttctttatttgcatttcaatgttatcccctttcctagt
tttccctctgaaaatcccctataccctccctcctccccctgctacccaac
ccactcattcctggtcctggcatacccctatactggggcatagagtcttc
acaagaccaaaggcctctcctcccattaatgacctactaggccatcctct
gctacttttatagatagagccacaaattccaccatgtgttttctttgatt
ggtagtatagttctaaggagctctgggggtactggttagttcatattgat
gttctttctatggggtttcagttcccttcatcttcctgggtatttctctg
gctccttcattggggaccttgtaatcacttttatttaatattatattagg
taaataatttcttcaaaaatctttatagaacactctagtaagaaaacatt
tttttccttcagtcaacatttgcctataaggtttaattcctaatacagag
gcaacagatgaccattgacaataaatagagtgctgcataaatgctgtgtt
tttatgtagattcaaatatagattattcattaaagggaatgcactattat
tacctccataagaatataggataatcttcctcttttgttggaataccagg
aaaaagtggataagtattaaaaccattccacattatataagcaagtgaac
cctagcttgaaaacagtggatgctaaaattaattgaaattgtagtttaaa
cgtaagtagttccaaacata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80972638_80973787
seq2: B6Ng01-230M16.b_49_1178

seq1  GAATTCTCTTGTTTTGAGTCTTATATAGGCTGCATTATTGTGATAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGTTTTGAGTCTTATATAGGCTGCATTATTGTGATAGAAAG  50

seq1  GACAGAGATTTCTTTTGAAAGGTATCAAATTTTCTTCTAAAACAGAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGATTTCTTTTGAAAGGTATCAAATTTTCTTCTAAAACAGAGAAC  100

seq1  TTCAAAGTGATTTTGAACTCATTGTTCATTTTATTTGATCAACAGAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTGATTTTGAACTCATTGTTCATTTTATTTGATCAACAGAGATG  150

seq1  AACTACAAGACCAAATTCATGTCTACTAAAATAACATTGAGCTCACAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAAGACCAAATTCATGTCTACTAAAATAACATTGAGCTCACAAGG  200

seq1  CTGCTAGGTTTTTTTTTTTTTAAGAAAATGATGGTCTATGCAGAGATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGGTTTTTTTTTTTTTAAGAAAATGATGGTCTATGCAGAGATGTC  250

seq1  TTCAAAACTTGGTGAGCTACAACAATTATGATAATAAAGCTCATGTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACTTGGTGAGCTACAACAATTATGATAATAAAGCTCATGTAAAA  300

seq1  TGGCAGATGTTAATTTTACTTAATGAAAAAGCAGAATATTTAAAGCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGATGTTAATTTTACTTAATGAAAAAGCAGAATATTTAAAGCAGAA  350

seq1  TCTTCATTATCAGTGCTCATGTAAGCCATTATTTACCTTACTAATGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTATCAGTGCTCATGTAAGCCATTATTTACCTTACTAATGATGA  400

seq1  ATGGGATACATGTTTTCTCCAAGACTGATAAAGTCAATGCTGTAAAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATACATGTTTTCTCCAAGACTGATAAAGTCAATGCTGTAAAAAGT  450

seq1  TTTAAATGAGTAGCCTACATTTTATATTTTAAAAGTTTCCAAGAACACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGAGTAGCCTACATTTTATATTTTAAAAGTTTCCAAGAACACAG  500

seq1  GACATATAATACATGGGTATGAAATCCTTAATGTTTTCTTGTAACTGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATAATACATGGGTATGAAATCCTTAATGTTTTCTTGTAACTGTAT  550

seq1  TTGCTTCAACAAAAAGATCATGACAAATGCATAATATTTCTCAGATACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCAACAAAAAGATCATGACAAATGCATAATATTTCTCAGATACCT  600

seq1  GTAACGGTACATCCTGGTACAGACACAATGATACAAGCATCCTTTACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACGGTACATCCTGGTACAGACACAATGATACAAGCATCCTTTACAGA  650

seq1  CCTCGTTTCTTCTTTATATCGGGTAACAATTCTTTCTGTGTACCAGGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTTTCTTCTTTATATCGGGTAACAATTCTTTCTGTGTACCAGGCAT  700

seq1  CTCTATATTGTCTTGATTTCTGCTAAGAATAATTTTCAAAGATTATCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATATTGTCTTGATTTCTGCTAAGAATAATTTTCAAAGATTATCACA  750

seq1  GAAACTAGTTCTTCTTTTCTTTAAAGACTTGTTTACCTTATTTATGTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAGTTCTTCTTTTCTTTAAAGACTTGTTTACCTTATTTATGTATG  800

seq1  TTTTGCCTGCATGTGTGTATACCTGCCACCTATGTTTCCAGTGGTTTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTGCATGTGTGTATACCTGCCACCTATGTTTCCAGTGGTTTTGG  850

seq1  AGACTAAAAAGTGATTGGATTCTGTGGAACTGAAGAGATACAGTTGTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAAAAGTGATTGGATTCTGTGGAACTGAAGAGATACAGTTGTGAG  900

seq1  CTACTGGCGACAAACTCACATGCTCTAGAAGAACAGCAAGTAC-TCTTAG  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTACTGGCGACAAACTCACATGCTCTAGAAGAACAGCAAGTACTTCTTAG  950

seq1  TCACCAAAACAACTCTTCAATCTCTGTACCTTCCTTTACTTAAATCTTTC  999
      |||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  TCACCAAAAC-ACTCTTCAATCTCTGTACCTTCCTTTACTT-AATCTTTC  998

seq1  AATACTTATGATATCTTTATTTTATGTAAGAATGAAGTATTTCTCTGGTC  1049
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  AATACTTATGATATCTTTATTTTATGTA--GATGAAGTATTTCTCTGGTC  1046

seq1  AAAAATTAAAACAGCATAAATTGTTCAGTTACTATTACTTTTATTTTAAA  1099
      |||| |   ||||||||||  || |||||||||| |||||| |||| |||
seq2  AAAATT---AACAGCATAA--TG-TCAGTTACTA-TACTTTAATTTCAAA  1089

seq1  TTGTCTTGTTTTGAGTTTTTTTAATTTATGTTAGGTAA--AAACAAAATG  1147
      ||| |   | |||||  |||||||       |||||||  |||| |||||
seq2  TTGGC---TGTTGAG--TTTTTAA------GTAGGTAAGTAAAC-AAATG  1127

seq1  TTC  1150
      |||
seq2  TTC  1130


seq1: chr5_81111178_81112345
seq2: B6Ng01-230M16.g_67_1236 (reverse)

seq1  TATGTTTTGAAAACTACTAACATTTTTATACTACAA-TTCAATAAAATTT  49
      ||||||| |  ||||||| ||   |||| ||||||| |||||| ||  ||
seq2  TATGTTTGG--AACTACTTAC--GTTTAAACTACAATTTCAATTAA--TT  44

seq1  TTAGCAATCAATTGTTTCAAAGCTAGGGTTCCACTGCTAATTATAAT-TG  98
      ||||| ||| | |||||  ||||||||||||   |||| | |||||| ||
seq2  TTAGC-ATCCACTGTTTTCAAGCTAGGGTTCACTTGCTTA-TATAATGTG  92

seq1  TGATGG-TTTAATAC-TATCCACTTTTTCCTGGTAT--CCACAAAAGA-G  143
        |||| |||||||| ||||||||||||||||||||  | |||||||| |
seq2  GAATGGTTTTAATACTTATCCACTTTTTCCTGGTATTCCAACAAAAGAGG  142

seq1  AAGATAATCCTATAATTCTTATGGA-GTAATAATAGTGCATT-CCTTTAA  191
      ||||| ||||||| ||||||||||| |||||||||||||||| |||||||
seq2  AAGATTATCCTAT-ATTCTTATGGAGGTAATAATAGTGCATTCCCTTTAA  191

seq1  TGAATAATCTATATTTGAATCTACAT-AAAACACAGCATTTATGCAGCAC  240
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGAATAATCTATATTTGAATCTACATAAAAACACAGCATTTATGCAGCAC  241

seq1  TCTATTTATTTGTCAATGGTCATCTGTTGCCTCTGTATTAGGAATTAACC  290
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  TCTATTTA-TTGTCAATGGTCATCTGTTGCCTCTGTATTAGGAATTAAAC  290

seq1  CTTATAGGCAAATG-TGACTG-AGGAAAAAAATGTTTTCTTACTAGAGTG  338
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  CTTATAGGCAAATGTTGACTGAAGGAAAAAAATGTTTTCTTACTAGAGTG  340

seq1  TTCTATAAAGATTTTTGAAGAAATTATTTACCTAATATAATATTAAATAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAAAGATTTTTGAAGAAATTATTTACCTAATATAATATTAAATAA  390

seq1  AAGTGATTACAAGGTCCCCAATGAAGGAGCCAGAGAAATACCCAGGAAGA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATTACAAGGTCCCCAATGAAGGAGCCAGAGAAATACCCAGGAAGA  440

seq1  TGAAGGGAACTGAAACCCCATAGAAAGAACATCAATATGAACTAACCAGT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGAACTGAAACCCCATAGAAAGAACATCAATATGAACTAACCAGT  490

seq1  ACCCCCAGAGCTCCTTAGAACTATACTACCAATCAAAGAAAACACATGGT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCAGAGCTCCTTAGAACTATACTACCAATCAAAGAAAACACATGGT  540

seq1  GGAATTTGTGGCTCTATCTATAAAAGTAGCAGAGGATGGCCTAGTAGGTC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTGTGGCTCTATCTATAAAAGTAGCAGAGGATGGCCTAGTAGGTC  590

seq1  ATTAATGGGAGGAGAGGCCTTTGGTCTTGTGAAGACTCTATGCCCCAGTA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGGGAGGAGAGGCCTTTGGTCTTGTGAAGACTCTATGCCCCAGTA  640

seq1  TAGGGGTATGCCAGGACCAGGAATGAGTGGGTTGGGTAGCAGGGGGAGGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGTATGCCAGGACCAGGAATGAGTGGGTTGGGTAGCAGGGGGAGGA  690

seq1  GGGAGGGTATAGGGGATTTTCAGAGGGAAAACTAGGAAAGGGGATAACAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGTATAGGGGATTTTCAGAGGGAAAACTAGGAAAGGGGATAACAT  740

seq1  TGAAATGCAAATAAAGAAAATATCTAATAAAGAAAAAAAAGTGATCTGAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGCAAATAAAGAAAATATCTAATAAAGAAAAAAAAGTGATCTGAG  790

seq1  TGTGATGTTAAATTCCTGCAATCTCAGAATTTTGCAGGTGGAAGCAGGAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGTTAAATTCCTGCAATCTCAGAATTTTGCAGGTGGAAGCAGGAG  840

seq1  GGGCAGTTCAAGGCCAGCCGGAGCTACATGGTGACTTTGAGGACAATGTA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTTCAAGGCCAGCCGGAGCTACATGGTGACTTTGAGGACAATGTA  890

seq1  GGCTACATGTAAACCTGCCTCAAAAATCAAACAAACAAACTAGGCATAAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACATGTAAACCTGCCTCAAAAATCAAACAAACAAACTAGGCATAAG  940

seq1  TTAGATGTAACACCATTTTGGTAAAAATTGGGTAGAAGAAATATAATTTA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTAACACCATTTTGGTAAAAATTGGGTAGAAGAAATATAATTTA  990

seq1  CCTTTCTACATTTAAAATGGAGAAGAAGAGAGGGAAGAAGAAAAAGTTGT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTACATTTAAAATGGAGAAGAAGAGAGGGAAGAAGAAAAAGTTGT  1040

seq1  AGAGCATCTAACTCTGAAGTGTGTGCCTGTGCATGGGCGTGTTCACGTGT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATCTAACTCTGAAGTGTGTGCCTGTGCATGGGCGTGTTCACGTGT  1090

seq1  GTGTGTTTGTGGCTTGTGTGTGTTTAATAGCTTAGGAAGGAACAAACGAA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTGTGGCTTGTGTGTGTTTAATAGCTTAGGAAGGAACAAACGAA  1140

seq1  CCAGACTAACATGGTCGCTGATCTGAATTC  1168
      ||||||||||||||||||||||||||||||
seq2  CCAGACTAACATGGTCGCTGATCTGAATTC  1170


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