BAC Information

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BAC

Clone NameB6Ng01-230O05
Chromosome5 (Build37)
Map Location 14,958,871 - 14,960,007
singlet/doubletsinglet
Overlap geneSpeer8-ps1
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230O05.bB6Ng01-230O05.g
ACCGA043633GA043634
length1,2051,137
definitionB6Ng01-230O05.b B6Ng01-230O05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcattctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
cacttgaaatattagccagagcaatttgacaaaaaaaggagatcaagggg
atacaaattggaaaagagaaagtcaaaatatcattttttgcagatgatat
gatagtatatataagtgaccctaaatattccaccagagaactactaaacc
tgataaacagctttggtcaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
agcaaattagaaacagcaatctgcaaattcatctggaataacaaaaaaac
ctaggatagcaaaaagtcttctcaaggataaaagtacctctggtggaatc
accatgcctgacctaaagctttactacagagcaattgtgataaaaactgc
atggtactggtatagagacagacaagtagaccaatgtgacagaattgaag
acccagaaatgaacccacacacctatggtcacttgatcttcgacaaggga
gctaaaccatccagtggaagaaagacagcattttcaacaattggtgctgg
ccacaactggttgtaatcatgtagaagatgcgaatcgatccatacttatc
tcttgtactaaggtcaaatctagtggatcagacttcacataaacagaaga
cactgaactatagaagagaaagtgggggaaaggcctagaagatatgggca
cagggataaattcttgaaccgaacagcatgctgtgccagtaagatcggca
tggacaatgacctaatgaactctaagtttctgcaagctaaaagagaacaa
tcggc

gaattctgcactaaacccatctattcctgggatttgtttggttgggagac
tattaatgactgcttctaattctttaaggcttatgggacagccttagctc
aggggcatagatagagacccaaccttaccagttctcctgtttggtggcac
agtccactttgccccacaatgaaatgtggatgttgtagattaaagaatat
attgaaatatgagcagtaaaatgaaaatcattcattgagagaaaaaaatt
gtcttcaagtggtcattcttaatccaacctttttacaaaaccttaataaa
tattcttacaaaataagcatgaaattaattgtaaaagaagaaagaaatgt
ttctggcctcttgccataattgattttcaaattttttcttattaatttta
attagacattcagagaaagtagacttgagaaacagtttctagttgatatg
taaatggtacttaacagatcacagagatggctgaaggagcaaggacctag
aggatattcaaagaatggttcattattggccaagtggtgcttaacactct
cataagtaacttctctcacctctaatcatgtaactatggttctatactat
atgtaatccatatctgtttctttttatcaatatcctttaagattacccag
cactatatattttcaatgtaataattgagcaatatgctcaagtgtcttgt
tgcattatgtgtaaaaatttgcaataatctttgagaataagaaaaatttt
atttttgcccagatataatatgtcttagttagggttttgctgctgtaaac
agacactatgaccatggcaactcttaaaaggagaccatttaattgggcct
gtcctacaggttcagaggttcagtccattatcatcaaggcaggagcatgg
cagtgccagggcaggcatggttcaggagagctgagagttctacatctgca
tctgaagccagttggagaaagactggcttcaaggaagctaggagggagtc
tcaaagcatgaacgacttcctttctcacaagccatacctacctccatacc
ttctaacaagtgccaatcctggtcaagcattatccaggcccacacactac
tacttgtctataaattcccaggagccagcaccttgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14958871_14960007
seq2: B6Ng01-230O05.g_69_1205

seq1  GAATTCAGCACTAAACCCATCTGTTCCTGGGATTTGTTCGGTTGGGTGAC  50
      |||||| ||||||||||||||| ||||||||||||||| ||||||| |||
seq2  GAATTCTGCACTAAACCCATCTATTCCTGGGATTTGTTTGGTTGGGAGAC  50

seq1  TATTAATGACTGCTTCTAATTCTTTAAGGGTTATGGGACAGCCTTAGCTC  100
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATTAATGACTGCTTCTAATTCTTTAAGGCTTATGGGACAGCCTTAGCTC  100

seq1  AGGGGCATAGATAGAGACCCAACCTTACCAGTTCTCCTGTCTGGTGGCAC  150
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGGGCATAGATAGAGACCCAACCTTACCAGTTCTCCTGTTTGGTGGCAC  150

seq1  AGTCCACTTTGCCCCACAATGAAATGTGGATGTTGTAGATTAAAGAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACTTTGCCCCACAATGAAATGTGGATGTTGTAGATTAAAGAATAT  200

seq1  ATTGAAATATGAGCAGTAAAATGAAAATCATTCATTGAGAGAAAAAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATATGAGCAGTAAAATGAAAATCATTCATTGAGAGAAAAAAATT  250

seq1  GTCTCCAAGTGGTCATTCTTAATCCAACCTTTTTACAAAACCTTAATAAA  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAAGTGGTCATTCTTAATCCAACCTTTTTACAAAACCTTAATAAA  300

seq1  TATTCTTACAAAATAAGCATGAAATTAATTGTAAAAGAAGAAAGAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTACAAAATAAGCATGAAATTAATTGTAAAAGAAGAAAGAAATGT  350

seq1  TTCTGGCCTCTTGCCATAATTGATTTTCAATTTTTTTCTTATTAATTTTA  400
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCTGGCCTCTTGCCATAATTGATTTTCAAATTTTTTCTTATTAATTTTA  400

seq1  ATTAGACATTCAGAGAAAGTAGACTTGAGAAACAGTTTCTAGTTGATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACATTCAGAGAAAGTAGACTTGAGAAACAGTTTCTAGTTGATATG  450

seq1  TAAATGGTACTTAACAGGTCACAGAGATGACTGAAGGAGCAAGGACCTAG  500
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  TAAATGGTACTTAACAGATCACAGAGATGGCTGAAGGAGCAAGGACCTAG  500

seq1  AGGATATTCAAAGAATGGTTCATTATTGGCCAAGTGGTGCTTAACACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATTCAAAGAATGGTTCATTATTGGCCAAGTGGTGCTTAACACTCT  550

seq1  CATAAGTAACTTCTCTCACCTCTAATCATGTAACTATGGTTCTATACTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTAACTTCTCTCACCTCTAATCATGTAACTATGGTTCTATACTAT  600

seq1  ATGTAATCCATATCTGTTTCTTTTTATCAATATCCTTTAAGACTACCCAG  650
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATGTAATCCATATCTGTTTCTTTTTATCAATATCCTTTAAGATTACCCAG  650

seq1  CACTATATATTTTCAATGTAATAATTGAGCAATATGCTCAAGTGTCTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATATATTTTCAATGTAATAATTGAGCAATATGCTCAAGTGTCTTGT  700

seq1  TGCATTATGTGTAAAAATTTGCAATAATCTTTGAGAATAAGAAAAATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTATGTGTAAAAATTTGCAATAATCTTTGAGAATAAGAAAAATTTT  750

seq1  ATTTTTGCCCAGATATAATATGTCTTAGTTAGGGTTTTGCTGCTGTAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCCCAGATATAATATGTCTTAGTTAGGGTTTTGCTGCTGTAAAC  800

seq1  AGACACTATGACCATGGCAACTCTTAAAAGGAGACCATTTAATTGGGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTATGACCATGGCAACTCTTAAAAGGAGACCATTTAATTGGGCCT  850

seq1  GTCCTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGCAGGAGCATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGCAGGAGCATGG  900

seq1  CAGTGCCAGGGCAGGCATGGTTCAGGAGGAGCTGAGAGTTCTACATCTTC  950
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  CAGTGCCAGGGCAGGCATGGTTCAGGA-GAGCTGAGAGTTCTACATCTGC  949

seq1  ATCTGAAGGCCAGTTGGAG-AAGACTGGCATCCAGGAAGCTAGGAGGGAG  999
      ||||||| ||||||||||| ||||||||| || |||||||||||||||| 
seq2  ATCTGAA-GCCAGTTGGAGAAAGACTGGCTTCAAGGAAGCTAGGAGGGA-  997

seq1  GTCTCAAAGCATGACAGACTTCCTTCCTCCAACAAGGCCATACCTA-CTC  1048
      ||||||||||||||  ||||||||| |||  |||| |||||||||| |||
seq2  GTCTCAAAGCATGAACGACTTCCTTTCTC--ACAA-GCCATACCTACCTC  1044

seq1  CATACCTCCTAAC-AGTGCC-ATCCTGGGCCAAGCA-TATTCAAGCCACC  1095
      ||||||| ||||| |||||| ||||| || |||||| ||| || |||  |
seq2  CATACCTTCTAACAAGTGCCAATCCT-GGTCAAGCATTATCCAGGCCCAC  1093

seq1  ACACTACTACTTGTCTATAA--TCCCAGGAGCCAGCACCCTGAG  1137
      ||||||||||||||||||||  ||||||||||||||||| ||||
seq2  ACACTACTACTTGTCTATAAATTCCCAGGAGCCAGCACCTTGAG  1137


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