BAC Information

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BAC

Clone NameB6Ng01-231C17
Chromosome5 (Build37)
Map Location 15,636,862 - 15,769,970
singlet/doubletdoublet
Overlap geneCacna2d1
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781
Downstream geneLOC668121, Hgf, EG668131, LOC626390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231C17.bB6Ng01-231C17.g
ACCGA043841GA043842
length1,0991,203
definitionB6Ng01-231C17.b B6Ng01-231C17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,636,862 - 15,637,971)(15,768,780 - 15,769,970)
sequence
gaattcttgtattgaatagctttctactgtgtattagagtaaatgcatac
aatttaagaaaaaagatgcaagattttttttctgtctaacctgaaaaaca
ttctgcaatagataaaacattttgaaaattatgtttgaagaaaacaatta
ctaagaaggatattttgtataaaagatgaaatagtagttcaaagactgta
atattaggttgtaaagaagtatttgtgtgatttattttatctatcatcta
tctatcatctatttatgtatttacattatatcatcctgtactaaaagtgt
tgcagtgttatgcagactattgtctattttttttccaaaattttataaat
gaatagcaagtctaatacttaatgtatttagaacggaatgacaggattct
tgctttcaatcgttctgattgatgagcagatacttttatttaaactcctt
aaattatttctgctttgcaatgttgacatagtgatatgtctttcagtggg
tgttttcttgagaggtacagatttctgataaagctgaaaagataaaaatc
tattgtttagaatattgtataatattttagccattggaggcttgctgatg
tttttatatcataaggattctactagcaaattaagagttgctattgattt
cttttacaattagcacgtcaagggctttggatatattataatatcaattt
tgtttatatgtatttgttgtaaagatttatactgctatccattttaaata
tgtccattattatcaattatagaattccttgggtgttttctggttatgta
gttatttctaggttcctttaacttctagcatgggcagtaattgctttagt
gcccccttagttccctcttagggactaagttgccttttgcacagtgcttg
acttcttgatagttgagaaatctcagttaaataaaaacaccttacctaag
aaagcatgtatcatttgttctgaaagaaaagacgcatatatcagcgactg
taattagggagtgtgacaggacatgaaagagaaatgcagtgcatgattct
ctcatatacagagtgcagtacagtgactgtttatagaagaagaactttc
gaattccatctctagatcacacagaaggagatcctggcaggaggagagaa
ttggctcttgagagctgtcctctgacttccatgtgcatgccatggcatga
gaaataccaccacctctaacaataagatctatttacaaaactaataggta
acttaaaataacaaaataaaaaataaaccaaattccatttacctatatga
atattcaaatataaaacaccatctttatgtcatttctttttttttacaat
tgaaaagtaacacagcagtacaaaagaaatcccaacacaagccaattccc
tctccctatattgtccgaacaagctccagacacaggggtttggttgagat
gcttttctttgacagaaaatattgttgcagctagtaaaagtggtgctttc
aattaattggccactctgtttttattcaatgcaaactgtatatacaagac
tatatgcaggactgtttttcccaggtatgatggcacatgcccttgattcc
agcacttggaaggcagaggctctatgagtccaaagacagattggcctata
ggcaattccaggttagccaagactaaacagtgatattttctctcataaaa
atattttttgtcttgagcttctatcacagagcagcatgattgtgaacttc
atagtcacgtgtttaataaataatgtatattattgaaataatttatcaac
tatctttccaatggaccactttaaattgggtgttcagtttcagattaaaa
ttatacataaaaggttaagctacaattaaggttaactttaattctctttt
tctgttaaactcatgtcatacagattcttggtggcttggtgcagccttca
ctcctcattagagaagttccttttatagtggatagacattaatatagaga
cccacagctagtcaaagtttaagggaataaatgatggtgaagtttcaagc
cccaaagtcttctatcctttgtccacactgccttccctctcacgctcaaa
gatgactgaagagtgtgccactgactgtaagaagctagggaatggggaga
ctgctgtcaagcagcgtctttccaccaagttgacaaggtgtacacctcag
aacctcatgacatctaacaggctctgaaaacagcacatccattcaggtca
ggtccaagtctagtctgaaacaagatgaatgcacatgacggcccaaaggg
gag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15636862_15637971
seq2: B6Ng01-231C17.b_47_1145

seq1  GAATTCTTGTATTGAATAGCTTTCTACTGTGTATTAGAGTAAATGCATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTATTGAATAGCTTTCTACTGTGTATTAGAGTAAATGCATAC  50

seq1  AATTTAAGAAAAAAGATGCAAGATTTTTTTTCTGTCTAACCTGAAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGAAAAAAGATGCAAGATTTTTTTTCTGTCTAACCTGAAAAACA  100

seq1  TTCTGCAATAGATAAAACATTTTGAAAATTATGTTTGAAGAAAACAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAATAGATAAAACATTTTGAAAATTATGTTTGAAGAAAACAATTA  150

seq1  CTAAGAAGGATATTTTGTATAAAAGATGAAATAGTAGTTCAAAGACTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGGATATTTTGTATAAAAGATGAAATAGTAGTTCAAAGACTGTA  200

seq1  ATATTAGGTTGTAAAGAAGTATTTGTGTGATTTATTTTATCTATCATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGGTTGTAAAGAAGTATTTGTGTGATTTATTTTATCTATCATCTA  250

seq1  TCTATCATCTATTTATGTATTTACATTATATCATCCTGTACTAAAAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCATCTATTTATGTATTTACATTATATCATCCTGTACTAAAAGTGT  300

seq1  TGCAGTGTTATGCAGACTATTGTCTATTTTTTTTCCAAAATTTTATAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTTATGCAGACTATTGTCTATTTTTTTTCCAAAATTTTATAAAT  350

seq1  GAATAGCAAGTCTAATACTTAATGTATTTAGAACGGAATGACAGGATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCAAGTCTAATACTTAATGTATTTAGAACGGAATGACAGGATTCT  400

seq1  TGCTTTCAATCGTTCTGATTGATGAGCAGATACTTTTATTTAAACTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCAATCGTTCTGATTGATGAGCAGATACTTTTATTTAAACTCCTT  450

seq1  AAATTATTTCTGCTTTGCAATGTTGACATAGTGATATGTCTTTCAGTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTCTGCTTTGCAATGTTGACATAGTGATATGTCTTTCAGTGGG  500

seq1  TGTTTTCTTGAGAGGTACAGATTTCTGATAAAGCTGAAAAGATAAAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTGAGAGGTACAGATTTCTGATAAAGCTGAAAAGATAAAAATC  550

seq1  TATTGTTTAGAATATTGTATAATATTTTAGCCATTGGAGGCTTGCTGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTAGAATATTGTATAATATTTTAGCCATTGGAGGCTTGCTGATG  600

seq1  TTTTTATATCATAAGGATTCTACTAGCAAATTAAGAGTTGCTATTGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATCATAAGGATTCTACTAGCAAATTAAGAGTTGCTATTGATTT  650

seq1  CTTTTACAATTAGCACGTCAAGGGCTTTGGATATATTATAATATCAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACAATTAGCACGTCAAGGGCTTTGGATATATTATAATATCAATTT  700

seq1  TGTTTATATGTATTTGTTGTAAAGATTTATACTGCTATCCATTTTAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATATGTATTTGTTGTAAAGATTTATACTGCTATCCATTTTAAATA  750

seq1  TGTCCATTATTATCAATTATAGAATTCCTTGGGTGTTTTCTGGTTATGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATTATTATCAATTATAGAATTCCTTGGGTGTTTTCTGGTTATGTA  800

seq1  GTTATTTCTAGGTTCCTTTAACTTCTAGCATGGGCAGTAATTGCTTTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCTAGGTTCCTTTAACTTCTAGCATGGGCAGTAATTGCTTTAGT  850

seq1  GCCCCCTTAGTTCCCTCTTAGGGACTAAGTTGCCTTTTGCACAGTGCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTTAGTTCCCTCTTAGGGACTAAGTTGCCTTTTGCACAGTGCTTG  900

seq1  ACTTCTTGATAGTTGAGAAATCTCAGTTAAATAAAAACACCTTACCTAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGATAGTTGAGAAATCTCAGTTAAATAAAAACACCTTACCTAAG  950

seq1  AAAGCATGTATCATTTGTTCTGAAAGAAAAAGACGCATATATCAAGCGAC  1000
      |||||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  AAAGCATGTATCATTTGTTCTGAAAG-AAAAGACGCATATATC-AGCGAC  998

seq1  TTGTTAATTAGGGGAGTGTGACAGGACATGAAAGAGACATGCAGTGCATT  1050
      |   |||||| |||||||||||||||||||||||||| ||||||||||| 
seq2  T--GTAATTA-GGGAGTGTGACAGGACATGAAAGAGAAATGCAGTGCAT-  1044

seq1  GAATTCTCTCATATACAGAGTGCCAGGTACAAGTGACTGTTTATAGAAGA  1100
        |||||||||||||||||||||   |||| |||||||||||||||||||
seq2  -GATTCTCTCATATACAGAGTGC--AGTAC-AGTGACTGTTTATAGAAGA  1090

seq1  AGAACCTTTC  1110
      |||| |||||
seq2  AGAA-CTTTC  1099

seq1: chr5_15768780_15769970
seq2: B6Ng01-231C17.g_62_1264 (reverse)

seq1  CTCCCC--TGGGCCCTCATGTGCATCTCTC-TGCTCCGGGCTAGACTGTG  47
      ||||||  |||||| ||||||||||   || || | | | ||||||| ||
seq2  CTCCCCTTTGGGCCGTCATGTGCATTCATCTTGTTTCAGACTAGACT-TG  49

seq1  GA-CTGACTTGA--TGATGTGCTGGTCTCAGAG-CTG-TAGATGTCATGA  92
      || ||||| |||   ||||||||| | |||||| ||| ||||||||||||
seq2  GACCTGACCTGAATGGATGTGCTGTTTTCAGAGCCTGTTAGATGTCATGA  99

seq1  GGTCCTGA-GTGTAACACCCTTGTC-ACTT-GTGG-AAGACGCTGCTTGA  138
      ||| |||| |||| ||| ||||||| |||| |||| ||||||||||||||
seq2  GGTTCTGAGGTGT-ACA-CCTTGTCAACTTGGTGGAAAGACGCTGCTTGA  147

seq1  CAGCAGTCCTCCCCATTCCCTAGC-TCTTACAGTCAGTGCACCACCTCTT  187
      ||||||| |||||||||||||||| ||||||||||||||   || |||||
seq2  CAGCAGT-CTCCCCATTCCCTAGCTTCTTACAGTCAGTGGCACA-CTCTT  195

seq1  CAGTCATCCTTGAGCGTGAGAGGG-AGGCAGTGT-GACAAA-GATAG-AG  233
      |||||||| ||||||||||||||| ||||||||| |||||| ||||| ||
seq2  CAGTCATCTTTGAGCGTGAGAGGGAAGGCAGTGTGGACAAAGGATAGAAG  245

seq1  ACTTTGGGGCTTGAAACTTCACCATCATTTATTCCC-TAAACTTTGACTA  282
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTTTGGGGCTTGAAACTTCACCATCATTTATTCCCTTAAACTTTGACTA  295

seq1  GCTGTGGGTCTCTATATTAATGTCTATCCACTATAAAAGGAACTTCTCTA  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGGTCTCTATATTAATGTCTATCCACTATAAAAGGAACTTCTCTA  345

seq1  ATGAGGAGTGAAGGCTGCACCAAGCCACCAAGAATCTGTATTGACATGAG  382
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGAGGAGTGAAGGCTGCACCAAGCCACCAAGAATCTGTA-TGACATGAG  394

seq1  TTTAACAGAAAAAGAGAATTAAAGTTAACCTTAATTGTAGCTTAACCTTT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGAAAAAGAGAATTAAAGTTAACCTTAATTGTAGCTTAACCTTT  444

seq1  TATGTATAATTTTAATCTGAAACTGAACACCCAATTTAAAGTGGTCCATT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATAATTTTAATCTGAAACTGAACACCCAATTTAAAGTGGTCCATT  494

seq1  GGAAAGATAGTTGATAAATTATTTCAATAATATACATTATTTATTAAACA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGATAGTTGATAAATTATTTCAATAATATACATTATTTATTAAACA  544

seq1  CGTGACTATGAAGTTCACAATCATGCTGCTCTGTGATAGAAGCTCAAGAC  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACTATGAAGTTCACAATCATGCTGCTCTGTGATAGAAGCTCAAGAC  594

seq1  AAAAAATATTTTTATGAGAGAAAATATCACTGTTTAGTCTTGGCTAACCT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATTTTTATGAGAGAAAATATCACTGTTTAGTCTTGGCTAACCT  644

seq1  GGAATTGCCTATAGGCCAATCTGTCTTTGGACTCATAGAGCCTCTGCCTT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGCCTATAGGCCAATCTGTCTTTGGACTCATAGAGCCTCTGCCTT  694

seq1  CCAAGTGCTGGAATCAAGGGCATGTGCCATCATACCTGGGAAAAACAGTC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGCTGGAATCAAGGGCATGTGCCATCATACCTGGGAAAAACAGTC  744

seq1  CTGCATATAGTCTTGTATATACAGTTTGCATTGAATAAAAACAGAGTGGC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATATAGTCTTGTATATACAGTTTGCATTGAATAAAAACAGAGTGGC  794

seq1  CAATTAATTGAAAGCACCACTTTTACTAGCTGCAACAATATTTTCTGTCA  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAATTGAAAGCACCACTTTTACTAGCTGCAACAATATTTTCTGTCA  844

seq1  AAGAAAAGCATCTCAACCAAACCCCTGTGTCTGGAGCTTGTTCGGACAAT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGCATCTCAACCAAACCCCTGTGTCTGGAGCTTGTTCGGACAAT  894

seq1  ATAGGGAGAGGGAATTGGCTTGTGTTGGGATTTCTTTTGTACTGCTGTGT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAGAGGGAATTGGCTTGTGTTGGGATTTCTTTTGTACTGCTGTGT  944

seq1  TACTTTTCAATTGTAAAAAAAAAGAAATGACATAAAGATGGTGTTTTATA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCAATTGTAAAAAAAAAGAAATGACATAAAGATGGTGTTTTATA  994

seq1  TTTGAATATTCATATAGGTAAATGGAATTTGGTTTATTTTTTATTTTGTT  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATATTCATATAGGTAAATGGAATTTGGTTTATTTTTTATTTTGTT  1044

seq1  ATTTTAAGTTACCTATTAGTTTTGTAAATAGATCTTATTGTTAGAGGTGG  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGTTACCTATTAGTTTTGTAAATAGATCTTATTGTTAGAGGTGG  1094

seq1  TGGTATTTCTCATGCCATGGCATGCACATGGAAGTCAGAGGACAGCTCTC  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTTCTCATGCCATGGCATGCACATGGAAGTCAGAGGACAGCTCTC  1144

seq1  AAGAGCCAATTCTCTCCTCCTGCCAGGATCTCCTTCTGTGTGATCTAGAG  1182
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCAATTCTCTCCTCCTGCCAGGATCTCCTTCTGTGTGATCTAGAG  1194

seq1  ATGGAATTC  1191
      |||||||||
seq2  ATGGAATTC  1203