BAC Information

Click to search

BAC

Clone NameB6Ng01-231D08
ChromosomeX (Build37)5 (Build37)
Map Location 113,460,999 - 113,462,00760,132,241 - 60,132,278
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC623913, LOC546363, LOC100039277
Downstream geneCpxcr1, EG624153, LOC100039300, EG665045, LOC100039319
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231D08.bB6Ng01-231D08.g
ACCGA043869GA043870
length1,027999
definitionB6Ng01-231D08.b B6Ng01-231D08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(113,460,999 - 113,462,007)(60,132,241 - 60,132,278)
sequence
gaattcattaacaagaaaatgttggtaaatatcccagaggttttctattt
gtacttttttcttcaaattgtcttttagtcctagcatatttaactcttaa
atagatgttttagtgtataagcttttctatgcaaaccttgtaaataagaa
aacatcacatattgaaattaaccagacccaaagtcagattttttttaaat
tcctgaattctgggttttctttttttttttttggttttttattgtttttg
ttgttgttgttgttgttgtttcttgtcttttttttcctctcagtgttgct
ttctagttgctaaacatttatcaaagtactgccttacggtgtgttcttgg
tacctttggcagctttgttaaaaattatgtgaccataaagcctggatata
tttctgagctctcatatttatacaacagaaaaacttcaaaagtgtagtaa
atgagtagatggaaaagtaaatagtaacaatagtagcaataaaatgttta
atatctgtcctcccctgtggaactgggatgaataggttccatgggtctct
ggtctggcaagaaatggccaaagtgttacaactctcagaagggaatccat
ggaggacaagtagccagggccccatgtctcctcctgtaacttagcaacac
caatgccaatggaagagactgcagctgacaccaaggagtagcaggggacg
ttagaaggggacagtgggctgacatggcagcaacagctccaatgacagtg
gcaggggcagcatgggcaagaaccttgcctgccaggcaggtccaaggtcc
agcaacaaatgctttccagagagagaactcttttgccaaagttgtaatgc
tcagtaaaacagcccactcccagagaattctggatgaaataatttgggta
ctttatttcatggatagggactttataaagtttgaggaatatggtaagga
tgcattggtagatgtttcctattggctcaatttgagatgctagggatgct
ctatttgcatggggaaggactactgtg
gaattcatttggaataacaaaaatcccaggaaagtgaaaagcattctcaa
caacaaaagaacttctgcgggaagcaccatctttgacttcaagctatact
acagagcaatagagacaaaaatggcatggtattagtacagtgacaggcag
gtagatcaatggaatagaattaaagagtcaaaaatgaacccacacaccta
tggtcacttgatctttgacaaaggagctaaagccatccagtggaaaaaaa
gacagcattttcaacaaatggtgctggttcaactagaggtcagcatgtag
aagaacataaattgatccattcttatctccttgtacaaagctaaagtcca
ggtggatcaagaacctccccattaaacgagatacattgaaactaagagaa
gagaaagtggggaagaatcttgaacatatgggcagaggggaaaatttctg
gaactgaacaccaatggcttatgctctatgatcaacaattgacaaatcta
acctcataaaattgtaaagcttctgtaaggcaaaggacactgtcaatagg
acaaaatggcaaccaacatattggaaaaagagctttattaatcctacatt
aaatagagggctaatatccaatagatacaaagaactcaagaagttaaact
ccagagaatcaaagaactctaataaaaattgggtataaagataaacaaag
aattttcttttttgtttttgtttgtttgttttaaaattttctttatattt
caaatattatcccctttattgattttccctccaaaaaatccctatccctt
ccctctccccctgctcaccaacccacccactcccacttcctggccctggc
attcccctacattagagcatagtgccttcacaggaccaagggcttctcct
cccattgatgaccagctagcccatcctgtgttacatatgcagctggagcc
atgagtcctacaacatgtactattgggttggtggttagtccctctgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_113460999_113462007
seq2: B6Ng01-231D08.b_43_1055

seq1  GAATTCATTAACAAGAAAATGTTGGTAAATATCCCAGAGGTTTTCTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAACAAGAAAATGTTGGTAAATATCCCAGAGGTTTTCTATTT  50

seq1  GTACTTTTTTCTTCAAATTGTCTTTTAGTCCTAGCATATTTAACTCTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTTTTCTTCAAATTGTCTTTTAGTCCTAGCATATTTAACTCTTAA  100

seq1  ATAGATGTTTTAGTGTATAAGCTTTTCTATGCAAACCTTGTAAATAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGTTTTAGTGTATAAGCTTTTCTATGCAAACCTTGTAAATAAGAA  150

seq1  AACATCACATATTGAAATTAACCAGACCCAAAGTCAGATTTTTTTTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCACATATTGAAATTAACCAGACCCAAAGTCAGATTTTTTTTAAAT  200

seq1  TCCTGAATTCTGGGTTTTCTTTTTTTTTTTTTGGTTTTTTATTGTTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAATTCTGGGTTTTCTTTTTTTTTTTTTGGTTTTTTATTGTTTTTG  250

seq1  TTGTTGTTGTTGTTGTTGTTTCTTGTCTTTTTTTTCCTCTCAGTGTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTGTTGTTTCTTGTCTTTTTTTTCCTCTCAGTGTTGCT  300

seq1  TTCTAGTTGCTAAACATTTATCAAAGTACTGCCTTACGGTGTGTTCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTGCTAAACATTTATCAAAGTACTGCCTTACGGTGTGTTCTTGG  350

seq1  TACCTTTGGCAGCTTTGTTAAAAATTATGTGACCATAAAGCCTGGATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTGGCAGCTTTGTTAAAAATTATGTGACCATAAAGCCTGGATATA  400

seq1  TTTCTGAGCTCTCATATTTATACAACAGAAAAACTTCAAAAGTGTAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGCTCTCATATTTATACAACAGAAAAACTTCAAAAGTGTAGTAA  450

seq1  ATGAGTAGATGGAAAAGTAAATAGTAACAATAGTAGCAATAAAATGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTAGATGGAAAAGTAAATAGTAACAATAGTAGCAATAAAATGTTTA  500

seq1  ATATCTGTCCTCCCCTGTGGAACTGGGATGAATAGGTTCCATGGGTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGTCCTCCCCTGTGGAACTGGGATGAATAGGTTCCATGGGTCTCT  550

seq1  GGTCTGGCAAGAAATGGCCAAAGTGTTACAACTCTCAGAAGGGAATCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGCAAGAAATGGCCAAAGTGTTACAACTCTCAGAAGGGAATCCAT  600

seq1  GGAGGACAAGTAGCCAGGGCCCCATGTCTCCTCCTGTAACTTAGCAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACAAGTAGCCAGGGCCCCATGTCTCCTCCTGTAACTTAGCAACAC  650

seq1  CAATGCCAATGGAAGAGACTGCAGCTGACACCAAGGAGTAGCAGGGGACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCAATGGAAGAGACTGCAGCTGACACCAAGGAGTAGCAGGGGACG  700

seq1  TTAGAAGGGGACAGTGGGCTGACATGGCAGCAACAGCTCCAATGACAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGGGGACAGTGGGCTGACATGGCAGCAACAGCTCCAATGACAGTG  750

seq1  GCAGGGGCAGCATGGGCAAGAACCTTGCCTGCCAGGCAGGTCCAAGGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGCAGCATGGGCAAGAACCTTGCCTGCCAGGCAGGTCCAAGGTCC  800

seq1  AGCAACAAATGC-TTCCAGAGAGAGAACTC-TTTGCCAAAGTTGTAATGC  848
      |||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  AGCAACAAATGCTTTCCAGAGAGAGAACTCTTTTGCCAAAGTTGTAATGC  850

seq1  TCAGTAAAACAG-CCACTCCCAGAGAATTCTGGATGAAATAATTTGGGTA  897
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAAACAGCCCACTCCCAGAGAATTCTGGATGAAATAATTTGGGTA  900

seq1  CTTTATTTCATGGATAGGGACTTTATAAAGTTTGAGGAATATGGT-AGGA  946
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTTATTTCATGGATAGGGACTTTATAAAGTTTGAGGAATATGGTAAGGA  950

seq1  TGCATTGGTAGATGTTTCCTATTGGCTCAATTTGAGATGCTAGGGATGCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGGTAGATGTTTCCTATTGGCTCAATTTGAGATGCTAGGGATGCT  1000

seq1  CTATTTGCATGGG  1009
      |||||||||||||
seq2  CTATTTGCATGGG  1013

seq1: chr5_60132241_60132278
seq2: B6Ng01-231D08.g_887_924 (reverse)

seq1  AGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGGTGGGT  38
      |||||||||||||||||| |||||||||||||||||||
seq2  AGGGGAATGCCAGGGCCAGGAAGTGGGAGTGGGTGGGT  38