BAC Information

Click to search

BAC

Clone NameB6Ng01-231E16
Chromosome5 (Build37)
Map Location 148,496,192 - 148,497,359
singlet/doubletsinglet
Overlap geneFlt1
Upstream geneUsp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3
Downstream geneLOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231E16.bB6Ng01-231E16.g
ACCGA043929GA043930
length1,1541,187
definitionB6Ng01-231E16.b B6Ng01-231E16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctaagcaaccaacagtgagcattgttaaccgtgtcagtcaaaac
gagagccaatcaatgacaaatgtattgttgtcctcatgtgcaaatggatg
gcgctctctcattggagttttaacttcaatggctattattaaatgatata
tgatcattctagaacaaaccaacaagtagaatagcccagcattagaggca
gaggaaagacgatttctgtgagttcaaggccagccttgtctacatagtga
gtttcaggcgagccagagctacatagtaagactgtgtctctgtgtctgtc
tctgtctgtcagtctgtccatctctctctatctctgactctctctctctg
tctctgtctctctctctctcacacacacatacacacacacacacacaaat
agaagaagtagagagaggagaatataactcataaaactaaccccacagat
atccccgccccacttcctacacacctgccccccaatttcttcttaaaacc
aacaaacaacaacgacatcatcaaaacaaggtgtctagctgaggctggcc
tttatcctgctttcgtgattgggctgtgcatgcaccacaaagcctgaagt
ggtgctaagtctgaaatctgtgtgtttctagggccagtgtgttcgtccct
cccccgcctcccaatacctgtcaggaatccgccatcttcttctaccactt
cctgttccagtttcccagcattctttggcttgcaaaggtcccatcagctt
ctgcttttgattttaggatttgtattatgggttcagggcccacactcctt
agcttaagtaattatattaactgtttccatataggccccattcagaagga
caaaggacctcaccagtcccactcataccagccactgggcagccagtgtc
cggggtttgacacccatcactgctgacagctcgtttctcaaaaaactctg
ttctgttagcatctgggtttgagaggaccaaccaccagcaggtctggggg
ctcttccttcttgcacacaggacttctggcacaaagctgtagccagtctg
agacagacacagtcttggagagatcattactgagattcaatgattcctga
agaacaaggcaagtgacagggtaaggtttttctaggaatcttatgctcgc
ctgg
gaattctctcacctgtcttggagtagctggtgttggtatttgagtcacag
tcctttttctagcctctgtcagccaccgttttccatcccagaaggtatat
cccaagtacactacttccatctgacatagctgggcttttttagcagaggc
ccagtaacccaaccagttctgctagcaatctcttggtcccctgccagtat
tctttctccgtggttgcagcaaggaacaagtcatcaacatattgaagcag
agttacctggaagttttcagctcggaaggaggctaaatctcgatgtagag
cctcatcaaaaagggtgggggagtttttgaacccctggggtaactgtgtc
caggtcaattgtcccgtttgtccagtgtcaggatctctccactcaaaggc
gaatatgggctggctggagggatataacttcaggcaaaagaaagcatctt
ttaaatcaagtactgtgtaccattttcactctggagggagtgagctgaaa
aggttatagggattagaaacagttgggtgaatatcttggaccctcttatt
gacctctctcaggtcttagactggtcggtagtcactcatgccaggtttct
ttactggcagtaaaggagtattccagggtgactggcaaggtaccaaaata
cctaattgtaatagtctctgaatacgtggcctgattccatctcttgcttc
acggctcattgggtattgtcgaactcctataggggtttgcatccgtcttc
agtcccacaaccacagggggaactctgacagccattccctgcctccagtc
tctgcccatgctctagggaaagcagtcaaccagtcttttaggtctggcac
ctccgtttgctttatgccttcatgcaatcggtattcttcctcaagctgca
agggctaagactacagaggtgggagattcccagcttactctcggcccttc
ttgggtaaatctgacctgggcctttaatttagtcagaagatctctcctag
agcggtggtgggacactcaggaatgacagataatgactcactggcccttc
ccagatctacaatgcatgcagtgttccaggggtttgtttctgaacaagtg
ctccatcactatgcttcttttatttgtactttccatggatgtttccacca
agaaatgtttcctcggcccctcgtggtgtccaaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_148496192_148497359
seq2: B6Ng01-231E16.b_47_1200 (reverse)

seq1  CCAGAGCGAGCATAAGATTTTCCTAGAAACA-CTTTCCCTGTCCACCTTG  49
      |||| ||||||||||||  |||||||||| | ||| |||||||   ||||
seq2  CCAG-GCGAGCATAAGA--TTCCTAGAAAAACCTTACCCTGTC--ACTTG  45

seq1  CTCTTG-TCTTCAGGAATCCATTGATATCCTCAAGTAATGATCTCTTCAA  98
      | |||| ||||||||||| |||||| || ||| ||||||||||||| |||
seq2  C-CTTGTTCTTCAGGAAT-CATTGA-AT-CTC-AGTAATGATCTCTCCAA  90

seq1  GACTGTGTTCTTGTCTCCCAGACTTGGCTACAGCCTTTGGTGGCCAGAAG  148
      ||||||||   |||||  ||||| ||||||||| |||||   ||||||||
seq2  GACTGTGT--CTGTCT--CAGAC-TGGCTACAG-CTTTG--TGCCAGAAG  132

seq1  TCCTGTGTGCAAGAAGGAAGAGCCCCCAGACCTGCTGGTGGTTGGTCCTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTGCAAGAAGGAAGAGCCCCCAGACCTGCTGGTGGTTGGTCCTC  182

seq1  TCAAAACCAGATGCTAACAGAACAGAG-TTTTTGAGAAACGAGCTGTCAG  247
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCAAACCCAGATGCTAACAGAACAGAGTTTTTTGAGAAACGAGCTGTCAG  232

seq1  CAGTGATGGGTGTCAAACCCC-GACACTGGCTGCCCAGTGGCTGGTATGA  296
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAGTGATGGGTGTCAAACCCCGGACACTGGCTGCCCAGTGGCTGGTATGA  282

seq1  GTGGGACTGGTGAGGTCCTTTGTCCTTCTGAATGGGGCCTATATGGAAAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACTGGTGAGGTCCTTTGTCCTTCTGAATGGGGCCTATATGGAAAC  332

seq1  AGTTAATATAATTACTTAAGCTAAGGAGTGTGGGCCCTGAACCCATAATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATATAATTACTTAAGCTAAGGAGTGTGGGCCCTGAACCCATAATA  382

seq1  CAAATCCTAAAATCAAAAGCAGAAGCTGATGGGACCTTTGCAAGCCAAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTAAAATCAAAAGCAGAAGCTGATGGGACCTTTGCAAGCCAAAG  432

seq1  AATGCTGGGAAACTGGAACAGGAAGTGGTAGAAGAAGATGGCGGATTCCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGGGAAACTGGAACAGGAAGTGGTAGAAGAAGATGGCGGATTCCT  482

seq1  GACAGGTATTGGGAGGCGGGGGAGGGACGAACACACTGGCCCTAGAAACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTATTGGGAGGCGGGGGAGGGACGAACACACTGGCCCTAGAAACA  532

seq1  CACAGATTTCAGACTTAGCACCACTTCAGGCTTTGTGGTGCATGCACAGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTTCAGACTTAGCACCACTTCAGGCTTTGTGGTGCATGCACAGC  582

seq1  CCAATCACGAAAGCAGGATAAAGGCCAGCCTCAGCTAGACACCTTGTTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCACGAAAGCAGGATAAAGGCCAGCCTCAGCTAGACACCTTGTTTT  632

seq1  GATGATGTCGTTGTTGTTTGTTGGTTTTAAGAAGAAATTGGGGGGCAGGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGTCGTTGTTGTTTGTTGGTTTTAAGAAGAAATTGGGGGGCAGGT  682

seq1  GTGTAGGAAGTGGGGCGGGGATATCTGTGGGGTTAGTTTTATGAGTTATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGAAGTGGGGCGGGGATATCTGTGGGGTTAGTTTTATGAGTTATA  732

seq1  TTCTCCTCTCTCTACTTCTTCTATTTGTGTGTGTGTGTGTGTATGTGTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCTCTCTACTTCTTCTATTTGTGTGTGTGTGTGTGTATGTGTGT  782

seq1  GTGAGAGAGAGAGAGACAGAGACAGAGAGAGAGAGTCAGAGATAGAGAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAGAGAGAGACAGAGACAGAGAGAGAGAGTCAGAGATAGAGAGA  832

seq1  GATGGACAGACTGACAGACAGAGACAGACACAGAGACACAGTCTTACTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACAGACTGACAGACAGAGACAGACACAGAGACACAGTCTTACTAT  882

seq1  GTAGCTCTGGCTCGCCTGAAACTCACTATGTAGACAAGGCTGGCCTTGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCTGGCTCGCCTGAAACTCACTATGTAGACAAGGCTGGCCTTGAA  932

seq1  CTCACAGAAATCGTCTTTCCTCTGCCTCTAATGCTGGGCTATTCTACTTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGAAATCGTCTTTCCTCTGCCTCTAATGCTGGGCTATTCTACTTG  982

seq1  TTGGTTTGTTCTAGAATGATCATATATCATTTAATAATAGCCATTGAAGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGTTCTAGAATGATCATATATCATTTAATAATAGCCATTGAAGT  1032

seq1  TAAAACTCCAATGAGAGAGCGCCATCCATTTGCACATGAGGACAACAATA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTCCAATGAGAGAGCGCCATCCATTTGCACATGAGGACAACAATA  1082

seq1  CATTTGTCATTGATTGGCTCTCGTTTTGACTGACACGGTTAACAATGCTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCATTGATTGGCTCTCGTTTTGACTGACACGGTTAACAATGCTC  1132

seq1  ACTGTTGGTTGCTTAGGAATTC  1168
      ||||||||||||||||||||||
seq2  ACTGTTGGTTGCTTAGGAATTC  1154