BAC Information

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BAC

Clone NameB6Ng01-231G09
Chromosome5 (Build37)
Map Location 93,394,324 - 93,467,316
singlet/doubletdoublet
Overlap geneShroom3, LOC623798
Upstream geneThap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik
Downstream geneAnkrd56, Sept11, Ccni, LOC100040826, 2010109A12Rik, Ccng2, LOC632115, EG330129, LOC100040885, LOC666064, LOC100040909, C87414, LOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231G09.bB6Ng01-231G09.g
ACCGA044011GA044012
length1,161808
definitionB6Ng01-231G09.b B6Ng01-231G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,394,324 - 93,395,469)(93,466,632 - 93,467,316)
sequence
gaattccaaagatagtcaaattgaatatggagatttttgcgggtttttct
tctgctcgttttgtgtgtatctgctgttgggtggctgtgtgcgccacagt
aggtgtgtagagttgtacagctttgtgtgggttccgaggcctgaccctgg
gtcatcaggttctcccatcgcaagtctcttcacccactgagccctctctc
cagccccagtcagacgttaataaagatgggtggccattctgcacttgtgc
tatgctgtgagaggtcccagtttccatggtgatcgggccttgccacgttt
ctccaggaggacggctcagtggtgacatctcggggtgtgttcctccttga
ccagtttattcacaaagacaatagttcccaagcctgtgagagatgagtct
aagccagttcaaaaccgagtccgtgctgccatcgtagaggaaatacactt
actaagcgacacagtcaggatggtttagtattttttagaagctggttttc
ctaaatgtcagacctgcaggtcatgagagctgatttctattgtcaagttt
cagtgaaagcaattgaggggttctgtggtacaaggtataagtctactcaa
acaaatcaggatgccagcggggctgcagatgtcccaggagccaggctggg
tacagccactagaaaaagtaagagtgtcatgttttgggcaggtgacacac
cacaaactttctgcttgttgttgacttagaggccacccagaaagtttctt
ggcagccgtcagccaaagctctgttctgtgggagcttatacacccgttca
agtgctctgaccctgacagggttcttttctaatgctccgttcagaggggc
catcgtgactcaggaggcagagagaaagccgtttagcagccacattgcac
tgcaaagttattctggagtaatactgatacgcccaactgacacttcgtta
gatgtggaccaatcagaagcctggaaacccatgcctgtaagttaactgtt
ctttcccagaccaaatgcctccagaatgttctagttaaatgcttggagcg
aaatttggggcctcccaggaaacatcagccattgttcttaagctactctt
caagggaacagtggtgggtactcagcaggtaaggtgctgcctggccaagc
ctggaacttgc
cggaattcacacacacacacacacacacagagagagagagagagagagag
agagagagagagagagagagagaaagagagagagagagagagagagaggg
agagagagagagagagagagcttgaaactccagacaacgtgccactcatt
caagatttggatagatctgaagtttcagttgtcagcatcagggtaccctt
tgcacgcatatcctatagcgtggataatgagagggtgaattggctgggcc
tctgttcttacgccagaagatttattgtgtttacttaccaacttctcatg
gattcgtagaaaggacggcaagaggcagctggcttcataaccacagaagt
tcctcccctgggacagcctgaaagcctttgaaaggaaaaaggagtgatta
cctaggcacaggacaaagacatctgcagccttagttgccttgggtgccac
ctgcccaagatgtcttgggtgccaccttccctgtgtgtcaccttacacct
ccagggctcctgggcccagatgcttgtttattcctctaagcttcttcaag
accacctggaagatcagaggcaggtggagcggcttcacttgcctctcggc
atccaggatacacacccggggccttgccttctttgtcaccacgtgtgctg
ttgactcaagtcagtttggggggggtgtgtgtgttggcacatgtattttt
cccctagaaatagggttcctgggcatgctgggtgcactcttgcttctcta
cagatgtttgggaatcagacctcaggttcctccatgcccattcatgtggc
actttatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_93394324_93395469
seq2: B6Ng01-231G09.b_39_1199

seq1  GAATTCCAAAGATAGTCAAATTGAATATGGAGATTTTTGCGGGTTTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGATAGTCAAATTGAATATGGAGATTTTTGCGGGTTTTTCT  50

seq1  TCTGCTCGTTTTGTGTGTATCTGCTGTTGGGTGGCTGTGTGCGCCACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCGTTTTGTGTGTATCTGCTGTTGGGTGGCTGTGTGCGCCACAGT  100

seq1  AGGTGTGTAGAGTTGTACAGCTTTGTGTGGGTTCCGAGGCCTGACCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGTAGAGTTGTACAGCTTTGTGTGGGTTCCGAGGCCTGACCCTGG  150

seq1  GTCATCAGGTTCTCCCATCGCAAGTCTCTTCACCCACTGAGCCCTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAGGTTCTCCCATCGCAAGTCTCTTCACCCACTGAGCCCTCTCTC  200

seq1  CAGCCCCAGTCAGACGTTAATAAAGATGGGTGGCCATTCTGCACTTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCAGTCAGACGTTAATAAAGATGGGTGGCCATTCTGCACTTGTGC  250

seq1  TATGCTGTGAGAGGTCCCAGTTTCCATGGTGATCGGGCCTTGCCACGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGTGAGAGGTCCCAGTTTCCATGGTGATCGGGCCTTGCCACGTTT  300

seq1  CTCCAGGAGGACGGCTCAGTGGTGACATCTCGGGGTGTGTTCCTCCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGAGGACGGCTCAGTGGTGACATCTCGGGGTGTGTTCCTCCTTGA  350

seq1  CCAGTTTATTCACAAAGACAATAGTTCCCAAGCCTGTGAGAGATGAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTATTCACAAAGACAATAGTTCCCAAGCCTGTGAGAGATGAGTCT  400

seq1  AAGCCAGTTCAAAACCGAGTCCGTGCTGCCATCGTAGAGGAAATACACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTTCAAAACCGAGTCCGTGCTGCCATCGTAGAGGAAATACACTT  450

seq1  ACTAAGCGACACAGTCAGGATGGTTTAGTATTTTTTAGAAGCTGGTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCGACACAGTCAGGATGGTTTAGTATTTTTTAGAAGCTGGTTTTC  500

seq1  CTAAATGTCAGACCTGCAGGTCATGAGAGCTGATTTCTATTGTCAAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGTCAGACCTGCAGGTCATGAGAGCTGATTTCTATTGTCAAGTTT  550

seq1  CAGTGAAAGCAATTGAGGGGTTCTGTGGTACAAGGTATAAGTCTACTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAAGCAATTGAGGGGTTCTGTGGTACAAGGTATAAGTCTACTCAA  600

seq1  ACAAATCAGGATGCCAGCGGGGCTGCAGATGTCCCAGGAGCCAGGCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCAGGATGCCAGCGGGGCTGCAGATGTCCCAGGAGCCAGGCTGGG  650

seq1  TACAGCCACTAGAAAAAGTAAGAGTGTCATGTTTTGGGCAGGTGACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCACTAGAAAAAGTAAGAGTGTCATGTTTTGGGCAGGTGACACAC  700

seq1  CACAAACTTTCTGCTTGTTGTTGACTTAGAGGCCACCCAG-AAGTTTCTT  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CACAAACTTTCTGCTTGTTGTTGACTTAGAGGCCACCCAGAAAGTTTCTT  750

seq1  GGCAGCCGTCAGCCAAAGCTCTGTTCTGT-GGAGCTTATACA-CCGTTCA  797
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  GGCAGCCGTCAGCCAAAGCTCTGTTCTGTGGGAGCTTATACACCCGTTCA  800

seq1  AGTGCTCTGACCCTGACAGGGTTCTTTTCTAATGCTCCGTTCAGAGGGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCTGACCCTGACAGGGTTCTTTTCTAATGCTCCGTTCAGAGGGGC  850

seq1  CATCGTGACTCAGGAGGCCAGAGAGAAAGCCGTTTAGCAGCCACATTGCA  897
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CATCGTGACTCAGGAGG-CAGAGAGAAAGCCGTTTAGCAGCCACATTGCA  899

seq1  CTGCAAAGTTATTCTGGAGTTAATACTG-TACGCCCAACTGACACTTCGT  946
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  CTGCAAAGTTATTCTGGAG-TAATACTGATACGCCCAACTGACACTTCGT  948

seq1  TAGATGTGGACCAATCAGAAGCCT-GAAACCCATGCCTGT-AGGTAACTG  994
      |||||||||||||||||||||||| ||||||||||||||| || ||||||
seq2  TAGATGTGGACCAATCAGAAGCCTGGAAACCCATGCCTGTAAGTTAACTG  998

seq1  -TCTTTCCCAG--CCAATGCCTCCAG-ATGTTCTTAGTAAATGCCTTGGA  1040
       ||||||||||  | ||||||||||| |||||||   |||||| ||||||
seq2  TTCTTTCCCAGACCAAATGCCTCCAGAATGTTCTAGTTAAATG-CTTGGA  1047

seq1  G-GAATTTTGGGG-CTCCCAG--AACA-CAG-CACTGTT-TAAAGTTACT  1083
      | ||| ||||||| |||||||  |||| ||| || |||| | ||| ||||
seq2  GCGAAATTTGGGGCCTCCCAGGAAACATCAGCCATTGTTCTTAAGCTACT  1097

seq1  CTTCAAGG--ACAGTGAGGTGG---CTCAGCAGGTAAAGGTGCTTGCT-G  1127
      ||||||||  |||||  |||||   |||||||||| ||||||||  || |
seq2  CTTCAAGGGAACAGT--GGTGGGTACTCAGCAGGT-AAGGTGCTGCCTGG  1144

seq1  CCAAGCCTGAGAACCTTGC  1146
      ||||||||| ||| |||||
seq2  CCAAGCCTG-GAA-CTTGC  1161

seq1: chr5_93466632_93467316
seq2: B6Ng01-231G09.g_61_746 (reverse)

seq1  CCAA-ACACACACCCCCCCCAAACTGACTTGAGTCAACAGCACACGTGGT  49
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACACACACCCCCCCCAAACTGACTTGAGTCAACAGCACACGTGGT  50

seq1  GACAAAGAAGGCAAGGCCCCGGGTGTGTATCCTGGATGCCGAGAGGCAAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGAAGGCAAGGCCCCGGGTGTGTATCCTGGATGCCGAGAGGCAAG  100

seq1  TGAAGCCGCTCCACCTGCCTCTGATCTTCCAGGTGGTCTTGAAGAAGCTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCGCTCCACCTGCCTCTGATCTTCCAGGTGGTCTTGAAGAAGCTT  150

seq1  AGAGGAATAAACAAGCATCTGGGCCCAGGAGCCCTGGAGGTGTAAGGTGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAATAAACAAGCATCTGGGCCCAGGAGCCCTGGAGGTGTAAGGTGA  200

seq1  CACACAGGGAAGGTGGCACCCAAGACATCTTGGGCAGGTGGCACCCAAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGGAAGGTGGCACCCAAGACATCTTGGGCAGGTGGCACCCAAGG  250

seq1  CAACTAAGGCTGCAGATGTCTTTGTCCTGTGCCTAGGTAATCACTCCTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAAGGCTGCAGATGTCTTTGTCCTGTGCCTAGGTAATCACTCCTTT  300

seq1  TTCCTTTCAAAGGCTTTCAGGCTGTCCCAGGGGAGGAACTTCTGTGGTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCAAAGGCTTTCAGGCTGTCCCAGGGGAGGAACTTCTGTGGTTA  350

seq1  TGAAGCCAGCTGCCTCTTGCCGTCCTTTCTACGAATCCATGAGAAGTTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCAGCTGCCTCTTGCCGTCCTTTCTACGAATCCATGAGAAGTTGG  400

seq1  TAAGTAAACACAATAAATCTTCTGGCGTAAGAACAGAGGCCCAGCCAATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAACACAATAAATCTTCTGGCGTAAGAACAGAGGCCCAGCCAATT  450

seq1  CACCCTCTCATTATCCACGCTATAGGATATGCGTGCAAAGGGTACCCTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCTCATTATCCACGCTATAGGATATGCGTGCAAAGGGTACCCTGA  500

seq1  TGCTGACAACTGAAACTTCAGATCTATCCAAATCTTGAATGAGTGGCACG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACAACTGAAACTTCAGATCTATCCAAATCTTGAATGAGTGGCACG  550

seq1  TTGTCTGGAGTTTCAAGCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGGAGTTTCAAGCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTC  600

seq1  TCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  650

seq1  TCTCTCTCTGTGTGTGTGTGTGTGTGTGTGAATTCC  685
      ||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTGTGTGTGTGTGTGTGTGTGTGAATTCC  686