BAC Information

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BAC

Clone NameB6Ng01-231L09
Chromosome5 (Build37)
Map Location 134,417,668 - 134,418,784
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039731, LOC666038, LOC100039750
Downstream geneGats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231L09.b
ACCGA044237
length1,126
definitionB6Ng01-231L09.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggttcattgagagatgctgtctccaaaaaaaaaaaaaaaagt
agaaagtatctgaggtatggcatccaatgtcagcctctggcctcaccacg
cagatatacacacacatgcatattgtgtgaggatttttcccagggaggtg
caaacatccactcatcgcagatacagaacccatggcaaactaaaggaatg
attataccaaaattcaacttggtaaaccaataatttctgagttactaaca
agagcctgtacgaggagctacaggatcagggataacaccaaagcagctac
attatcagaagcccaccctagcatgtgtcagaactcatgaaataaagctg
catccctgaagctactctgtgagtgccagtcagtccctaagtgatagaat
ctcagcccccaacagctgttccctgtttctacagcctagggaggggtcct
atgtgtcttgttagcttcagctttcccagacatgtgacatttggttactt
cctggattttatgaggccccatcctccttctaagaaagaatgtttcaatt
aggaggaaacataacaactcacaaaagaatatctatagtagggtaggatg
ggaaatacttacttggtgattctctgctcaataagcgatcattagtccta
tctctctctggggctctaagaagggtagatcattgataacactcttctac
ttaatgctgctttggtatgggacttcattagtcatcttttcatcattgtg
atagactgcatgagacaataatttttaaaaagaagaaaggttcatttggg
ttcctggtttcgggtgcttaagtctgccataatatgaaactcatggaaag
caaagcaagcttgtgtcttctggacccgtcttgatccacctgagttggca
atcaagagcaatcatcacttctctttgccaccagagaccatcacagaaaa
aacactgaaatgactaaagtagtgtcacctttatccagcctttaatctag
ttcatctacttgatcaacatgaattttcaataactattcttgccatggat
catttcaccagaaattgtccaactgtaagggaacattgattttggggggt
gcctagccctaatgaaacaatctaca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_134417668_134418784
seq2: B6Ng01-231L09.b_45_1170

seq1  GAATTCCAGGTTCATTGAGAGATGCTGTCTCCAAAAAAAAAAAAAAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTCATTGAGAGATGCTGTCTCCAAAAAAAAAAAAAAAAGT  50

seq1  AGAAAGTATCTGAGGTATGGCATCCAATGTCAGCCTCTGGCCTCACCACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTATCTGAGGTATGGCATCCAATGTCAGCCTCTGGCCTCACCACG  100

seq1  CAGATATACACACACATGCATATTGTGTGAGGATTTTTCCCAGGGAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATACACACACATGCATATTGTGTGAGGATTTTTCCCAGGGAGGTG  150

seq1  CAAACATCCACTCATCGCAGATACAGAACCCATGGCAAACTAAAGGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATCCACTCATCGCAGATACAGAACCCATGGCAAACTAAAGGAATG  200

seq1  ATTATACCAAAATTCAACTTGGTAAACCAATAATTTCTGAGTTACTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACCAAAATTCAACTTGGTAAACCAATAATTTCTGAGTTACTAACA  250

seq1  AGAGCCTGTACGAGGAGCTACAGGATCAGGGATAACACCAAAGCAGCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGTACGAGGAGCTACAGGATCAGGGATAACACCAAAGCAGCTAC  300

seq1  ATTATCAGAAGCCCACCCTAGCATGTGTCAGAACTCATGAAATAAAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAGAAGCCCACCCTAGCATGTGTCAGAACTCATGAAATAAAGCTG  350

seq1  CATCCCTGAAGCTACTCTGTGAGTGCCAGTCAGTCCCTAAGTGATAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGAAGCTACTCTGTGAGTGCCAGTCAGTCCCTAAGTGATAGAAT  400

seq1  CTCAGCCCCCAACAGCTGTTCCCTGTTTCTACAGCCTAGGGAGGGGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCCCCAACAGCTGTTCCCTGTTTCTACAGCCTAGGGAGGGGTCCT  450

seq1  ATGTGTCTTGTTAGCTTCAGCTTTCCCAGACATGTGACATTTGGTTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTTGTTAGCTTCAGCTTTCCCAGACATGTGACATTTGGTTACTT  500

seq1  CCTGGATTTTATGAGGCCCCATCCTCCTTCTAAGAAAGAATGTTTCAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATTTTATGAGGCCCCATCCTCCTTCTAAGAAAGAATGTTTCAATT  550

seq1  AGGAGGAAACATAACAACTCACAAAAGAATATCTATAGTAGGGTAGGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAACATAACAACTCACAAAAGAATATCTATAGTAGGGTAGGATG  600

seq1  GGAAATACTTACTTGGTGATTCTCTGCTCAATAAGCGATCATTAGTCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATACTTACTTGGTGATTCTCTGCTCAATAAGCGATCATTAGTCCTA  650

seq1  TCTCTCTCTGGGGCTCTAAGAAGGGTAGATCATTGATAACACTCTTCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTGGGGCTCTAAGAAGGGTAGATCATTGATAACACTCTTCTAC  700

seq1  TTAATGCTGCTTTGGTATGGGACTTCATTAGTCATCTTTTCATCATTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTGCTTTGGTATGGGACTTCATTAGTCATCTTTTCATCATTGTG  750

seq1  ATAGACTGCATGAGACAATAA-TTTTAAAAAGAAGAAAGGTTCATTT-GG  798
      ||||||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  ATAGACTGCATGAGACAATAATTTTTAAAAAGAAGAAAGGTTCATTTGGG  800

seq1  TTCCTGGTTTCGGGTGCTTAAGTCTGCCATAATATGAAACTCATGGAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGTTTCGGGTGCTTAAGTCTGCCATAATATGAAACTCATGGAAAG  850

seq1  CAAAGC-AGCTTGTGTCTTCTGGACCCGTCTTGATCCAACTGAGTTGGCA  897
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  CAAAGCAAGCTTGTGTCTTCTGGACCCGTCTTGATCCACCTGAGTTGGCA  900

seq1  ATCAAGAGCAATCATCACTTCTCTTTGCCA-CAGAGACCATCACAG-AAA  945
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  ATCAAGAGCAATCATCACTTCTCTTTGCCACCAGAGACCATCACAGAAAA  950

seq1  AACACTGAAATGACTAAAGTAGTGCCACCTTATTCCAGCCTTTATTCTAG  995
      |||||||||||||||||||||||| ||||||  ||||||||||| |||||
seq2  AACACTGAAATGACTAAAGTAGTGTCACCTTTATCCAGCCTTTAATCTAG  1000

seq1  GTCATCTACTTTGATCAACATG-ATTTTCAATAACTA-TCTTG-CATGGA  1042
       |||||||| |||||||||||| |||||||||||||| ||||| ||||||
seq2  TTCATCTAC-TTGATCAACATGAATTTTCAATAACTATTCTTGCCATGGA  1049

seq1  TCATTTCACCAGAATTGGTCAAAATGT-AGGGAACAATTGATTT--GGGG  1089
      |||||||||||||| | ||| || ||| ||||||| ||||||||  ||||
seq2  TCATTTCACCAGAAATTGTCCAACTGTAAGGGAAC-ATTGATTTTGGGGG  1098

seq1  GTGCCTAGCCCTAATGAACACATCTACA  1117
      ||||||||||||||||||   |||||||
seq2  GTGCCTAGCCCTAATGAAACAATCTACA  1126