BAC Information

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BAC

Clone NameB6Ng01-232F01
Chromosome5 (Build37)
Map Location 79,257,463 - 79,380,014
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232F01.bB6Ng01-232F01.g
ACCGA044683GA044684
length1,102718
definitionB6Ng01-232F01.b B6Ng01-232F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,257,463 - 79,258,555)(79,379,299 - 79,380,014)
sequence
gaattcttcaaaagcacaattcaaggaaagtcaaatacgtgattgtacta
tagagctcatgggaatatatctaaattatctcctttactccaggaatatt
tgcttatccatatcagtaagtgtctagtctaataatcagaaattgaaaga
aactgagatatttttgtgtgtcaactaatggatgagaatttgataactca
aaagtgaaaccattacaccaagaaatattatttagctgttaaaaattaaa
ttatgaagattaaatgtagatgaataggtactagaagaaaaatcatcctg
actgagttatcactgcccccaaaagacaaatgttgcttgtttttgttcct
tctatatgaatgttagcaattaatatttagataagtgtgttcctattaga
ccatggagtttaactagatactaaaagatcaaggaagagaagggattctt
ccaagttagggccaatagaatatagtgctataaagagatacatggtaaac
tggagaaagggaatagaagaagaagggaatggacaggcaggatgaaagag
ggaatttgagtaggggtgaataacactaaaggtctgtaggactgtaaaag
gttcctatattatatacctacaggcatgcatggtgtcagcagataatgac
agagacaatagcatagacagacatttaatactaccaagtaaaacaccctg
tgctgggtataaggctcacctagttgactcattggccaaagcagtgccat
aattgtcaccaaatgtcatggctattgggccaaaatagtagttttaaaac
atagacatatatgtaatgttgctaacaaagaatcatattcttttaaatct
acattaaaattataaatgagtgtgggattgaataactttgtttaaaatag
atgttccattaactgttttgaatttgtagttaactgaatcaatttactca
agatattgttcttaacatggctttcttccatcgactatctatgaaaagac
ttttagattatcatccttttggaaacttaaatatcactaaaaatttatga
ataggtactacttttcctaaagccagctacagaactgcatacaggctttc
aa

gaattccactgcctccctttacttcagagaagttacccaaagaagttatc
tctatacaatatctgcatgtttatttgtattgtaaattctgactcttggg
aaatccaaactgacatgatacgaaatagttttcaatggtacataggatag
tcttttacacaatggatgtgaaagatgaaaacttaagagatgcctagatc
acaaaattcaaagctactaggtaggtgaagcatatgaatgggctgcaatt
agatatatttcacttttagtgtgaaggaaacaagttaagagaattcctct
tgtcagtggtgaggatgcaaaatatcttatcagaaggacaggcttaaaac
aattagtgggtaagagttgagttacaagaacactggaacaatggttcaat
gactcctgaagtttagaataattataaagccaaaatgttatacaaaatag
acaataggttagttatctccaatgtagtctcactaccaatactaaccaca
attaaagggcttctaggtcagcactagatagcctacacagaagaaacaca
atggcattttcctaaactttttgtctcatattgctttactcaggcttttt
tttttttctttgccttgtagtcttttgctaatatgttatgttttctgaat
ttgtgtttatgaggctgtttgtgggtttacttgttttaaattatgatttg
attgttgtttgtttgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79257463_79258555
seq2: B6Ng01-232F01.b_46_1147

seq1  GAATTCTTCAAAAGCACAATTCAAGGAAAGTCAAATACGTGATTGTACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAAAGCACAATTCAAGGAAAGTCAAATACGTGATTGTACTA  50

seq1  TAGAGCTCATGGGAATATATCTAAATTATCTCCTTTACTCCAGGAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTCATGGGAATATATCTAAATTATCTCCTTTACTCCAGGAATATT  100

seq1  TGCTTATCCATATCAGTAAGTGTCTAGTCTAATAATCAGAAATTGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATCCATATCAGTAAGTGTCTAGTCTAATAATCAGAAATTGAAAGA  150

seq1  AACTGAGATATTTTTGTGTGTCAACTAATGGATGAGAATTTGATAACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGATATTTTTGTGTGTCAACTAATGGATGAGAATTTGATAACTCA  200

seq1  AAAGTGAAACCATTACACCAAGAAATATTATTTAGCTGTTAAAAATTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAAACCATTACACCAAGAAATATTATTTAGCTGTTAAAAATTAAA  250

seq1  TTATGAAGATTAAATGTAGATGAATAGGTACTAGAAGAAAAATCATCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAGATTAAATGTAGATGAATAGGTACTAGAAGAAAAATCATCCTG  300

seq1  ACTGAGTTATCACTGCCCCCAAAAGACAAATGTTGCTTGTTTTTGTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTTATCACTGCCCCCAAAAGACAAATGTTGCTTGTTTTTGTTCCT  350

seq1  TCTATATGAATGTTAGCAATTAATATTTAGATAAGTGTGTTCCTATTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATGAATGTTAGCAATTAATATTTAGATAAGTGTGTTCCTATTAGA  400

seq1  CCATGGAGTTTAACTAGATACTAAAAGATCAAGGAAGAGAAGGGATTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGTTTAACTAGATACTAAAAGATCAAGGAAGAGAAGGGATTCTT  450

seq1  CCAAGTTAGGGCCAATAGAATATAGTGCTATAAAGAGATACATGGTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTAGGGCCAATAGAATATAGTGCTATAAAGAGATACATGGTAAAC  500

seq1  TGGAGAAAGGGAATAGAAGAAGAAGGGAATGGACAGGCAGGATGAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAGGGAATAGAAGAAGAAGGGAATGGACAGGCAGGATGAAAGAG  550

seq1  GGAATTTGAGTAGGGGTGAATAACACTAAAGGTCTGTAGGACTGTAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTGAGTAGGGGTGAATAACACTAAAGGTCTGTAGGACTGTAAAAG  600

seq1  GTTCCTATATTATATACCTACAGGCATGCATGGTGTCAGCAGATAATGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATATTATATACCTACAGGCATGCATGGTGTCAGCAGATAATGAC  650

seq1  AGAGACAATAGCATAGACAGACATTTAATACTACCAAGTAAAACACCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAATAGCATAGACAGACATTTAATACTACCAAGTAAAACACCCTG  700

seq1  TGCTGGGTATAAGGCTCACCTAGTTGACTCATTGGCCAAAGCAGTGCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGTATAAGGCTCACCTAGTTGACTCATTGGCCAAAGCAGTGCCAT  750

seq1  AATTGTCACCAAATGTCATGGCTATT-GGCCAAAATAGTAGTTTTAAAAC  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AATTGTCACCAAATGTCATGGCTATTGGGCCAAAATAGTAGTTTTAAAAC  800

seq1  ATAGACATATATGTAATG-TGCTAAC-AAGAATCATATTCTTTTAAATCT  847
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  ATAGACATATATGTAATGTTGCTAACAAAGAATCATATTCTTTTAAATCT  850

seq1  ACATTAAAATTATAAATGAGTGTGGGATTGAATAACTTTGTTTAAAAATA  897
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACATTAAAATTATAAATGAGTGTGGGATTGAATAACTTTGTTT-AAAATA  899

seq1  GATGTTCCATTAACTG-TTTGAATTTGTAGTTAACTGAATCAATTTACTC  946
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GATGTTCCATTAACTGTTTTGAATTTGTAGTTAACTGAATCAATTTACTC  949

seq1  AAGATAATTGTTCTTAACAATGGC-TTCTTCCATCGACTATCTATGAAAA  995
      ||||| |||||||||||| ||||| |||||||||||||||||||||||||
seq2  AAGAT-ATTGTTCTTAAC-ATGGCTTTCTTCCATCGACTATCTATGAAAA  997

seq1  GACTTTAAGAATATCATC--TTTTGAAACTTAAATATCACTAAAAAATTA  1043
      |||||| ||| |||||||  ||| |||||||||||||||||||||| |||
seq2  GACTTTTAGATTATCATCCTTTTGGAAACTTAAATATCACTAAAAATTTA  1047

seq1  TGAATAGTTACTACTTT--CTAAAG-CAGCTAAAGAA-TGGATACA-GCT  1088
      ||||||| |||||||||  |||||| |||||| |||| || ||||| |||
seq2  TGAATAGGTACTACTTTTCCTAAAGCCAGCTACAGAACTGCATACAGGCT  1097

seq1  TTCAA  1093
      |||||
seq2  TTCAA  1102


seq1: chr5_79379299_79380014
seq2: B6Ng01-232F01.g_68_785 (reverse)

seq1  AAACAAACAAACAACAATCAAATCATAATTTAAAACAAGTAAACCCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAACAATCAAATCATAATTTAAAACAAGTAAACCCACAA  50

seq1  ACAGCCTCATAAACACAAATTCAGAAAACATAACATATTAGCAAAAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTCATAAACACAAATTCAGAAAACATAACATATTAGCAAAAGACT  100

seq1  ACAAGGCAA--AAAAAAAAAAAAGCCTGAGTAAAGCAATATGAGACAAAA  148
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCAAAGAAAAAAAAAAAAGCCTGAGTAAAGCAATATGAGACAAAA  150

seq1  AGTTTAGGAAAATGCCATTGTGTTTCTTCTGTGTAGGCTATCTAGTGCTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGGAAAATGCCATTGTGTTTCTTCTGTGTAGGCTATCTAGTGCTG  200

seq1  ACCTAGAAGCCCTTTAATTGTGGTTAGTATTGGTAGTGAGACTACATTGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAAGCCCTTTAATTGTGGTTAGTATTGGTAGTGAGACTACATTGG  250

seq1  AGATAACTAACCTATTGTCTATTTTGTATAACATTTTGGCTTTATAATTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACTAACCTATTGTCTATTTTGTATAACATTTTGGCTTTATAATTA  300

seq1  TTCTAAACTTCAGGAGTCATTGAACCATTGTTCCAGTGTTCTTGTAACTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAACTTCAGGAGTCATTGAACCATTGTTCCAGTGTTCTTGTAACTC  350

seq1  AACTCTTACCCACTAATTGTTTTAAGCCTGTCCTTCTGATAAGATATTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTACCCACTAATTGTTTTAAGCCTGTCCTTCTGATAAGATATTTT  400

seq1  GCATCCTCACCACTGACAAGAGGAATTCTCTTAACTTGTTTCCTTCACAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTCACCACTGACAAGAGGAATTCTCTTAACTTGTTTCCTTCACAC  450

seq1  TAAAAGTGAAATATATCTAATTGCAGCCCATTCATATGCTTCACCTACCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTGAAATATATCTAATTGCAGCCCATTCATATGCTTCACCTACCT  500

seq1  AGTAGCTTTGAATTTTGTGATCTAGGCATCTCTTAAGTTTTCATCTTTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTTTGAATTTTGTGATCTAGGCATCTCTTAAGTTTTCATCTTTCA  550

seq1  CATCCATTGTGTAAAAGACTATCCTATGTACCATTGAAAACTATTTCGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATTGTGTAAAAGACTATCCTATGTACCATTGAAAACTATTTCGTA  600

seq1  TCATGTCAGTTTGGATTTCCCAAGAGTCAGAATTTACAATACAAATAAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCAGTTTGGATTTCCCAAGAGTCAGAATTTACAATACAAATAAAC  650

seq1  ATGCAGATATTGTATAGAGATAACTTCTTTGGGTAACTTCTCTGAAGTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGATATTGTATAGAGATAACTTCTTTGGGTAACTTCTCTGAAGTAA  700

seq1  AGGGAGGCAGTGGAATTC  716
      ||||||||||||||||||
seq2  AGGGAGGCAGTGGAATTC  718


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