BAC Information

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BAC

Clone NameB6Ng01-232K20
Chromosome5 (Build37)
Map Location 29,347,873 - 29,348,919
singlet/doubletsinglet
Overlap genenone
Upstream geneInsig1, En2, Cnpy1, Prr8, Shh, LOC100039258
Downstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232K20.g
ACCGA044952
length1,056
definitionB6Ng01-232K20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctcctggtttgtaaccagccctcctgatagttgccctgatggg
ttaagaccatccctcaccatgtgatttctttaacagctgaatgctgtaat
tggactctgtaaagtgtgtgtattggcgtgcgtgtatgcctgggcgtgtg
tgagagtgagggcttagagagcagagccgcaaaagacacagatagttaaa
caagaggccaagataaactgtaagggaagtgggagctgctgctctgagtc
tgaagtgcatggcgggatgagacggagagatggctgagtctgaaggaaga
acacagacaagctgcagaacagagccaagtacatggcaggcagatttcgt
gggggaatggccaatccatctcagatagaagcactttcttctccactcac
acctttgccctgaggaggtgaagctatcaattatcatctattttacagag
aaagtgcagccttccttttaagtgggcccctgtgcagtacaagtcaggtt
tcctctaagccaacaatgcaaatgaaaagctatggactctgccctaaaag
agatgccacttcaagaggagggcttaagtggagtgggggccattggagct
accctggatctgtgtgagaagcataaacataaacaaaacatgtgtggaaa
acagtgacttcagcctgacctctgaagactagggaggaggaaaagacact
taaagtaggggcagtggaggcccagttctctagggtgagtgggggagggc
agtctccctgggaaagcagtcaatcacagaacagtgtagcatcaacagga
gagaaagtgagatctcagagaagaccacattgatgcccccacatggagaa
tgtaaagcaaatgggctgcatgtttcaataaccaaatgtcacaggaccat
atcatcagccagggcttaaggagagacataacttgtaggcctgagagatg
agaacagagaagagcctcagacattgaggaaagtctgtgcagagagattt
taatctgaagggccagaacttttctagattttttttctaatttactgggc
agaaat
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_29347873_29348919
seq2: B6Ng01-232K20.g_67_1122

seq1  GAATTCACGCCTGGTTTGTTTCCAG--GGCGTGACTTCAAGGCCCTCATG  48
      |||||| | ||||||||||  ||||    | |||  |    ||||| |||
seq2  GAATTCTCTCCTGGTTTGTAACCAGCCCTCCTGA--TAGTTGCCCTGATG  48

seq1  GGTTAAGACCATCAGCCACAATGTAGTTTCTTTAATAGCTGAATGCTGTC  98
      |||||||||||||   ||| ||||  ||||||||| ||||||||||||| 
seq2  GGTTAAGACCATCCCTCACCATGTGATTTCTTTAACAGCTGAATGCTGT-  97

seq1  CAGTCTGCT-TTTAACAGATGTCGATTGCCATGCTTCAAAGCCATGACAC  147
       | |   || | |||    |||  |||| | ||| |  | |||  | |  
seq2  AATTGGACTCTGTAAAGTGTGTGTATTGGCGTGCGTGTATGCCTGGGCGT  147

seq1  AGCTGACAGTGAGGGCTTAGAGAGCAGAGCCACAAAAGACACAGATAGTT  197
         ||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  GTGTGAGAGTGAGGGCTTAGAGAGCAGAGCCGCAAAAGACACAGATAGTT  197

seq1  AAACAAGAGGCCAAGATAAACTGTAAGGGAAGTGGGAGCTGCTGCTCTGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAGGCCAAGATAAACTGTAAGGGAAGTGGGAGCTGCTGCTCTGA  247

seq1  GTCTGAAGTGCATGGCGGGATGAGACGGAGAGATGGCTGAGTCTGAAGGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGTGCATGGCGGGATGAGACGGAGAGATGGCTGAGTCTGAAGGA  297

seq1  AGAACACAGACAAGCTGCAGAACAGAGCCAAGTACATGGCAGGCAGATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAGACAAGCTGCAGAACAGAGCCAAGTACATGGCAGGCAGATTT  347

seq1  CGTGGGGGAATGGCCAATCCATCTCAGATAGAAGCACTTTCTTCTCCACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGGGAATGGCCAATCCATCTCAGATAGAAGCACTTTCTTCTCCACT  397

seq1  CACACCTTTGCCCTGAGGAGGTGAAGCTATCAATTATCATCTATTTTACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTTTGCCCTGAGGAGGTGAAGCTATCAATTATCATCTATTTTACA  447

seq1  GAGAAAGTGCAGCCTTCCTTTTAAGTGGGCCCCTGTGCAGTACAAGTCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTGCAGCCTTCCTTTTAAGTGGGCCCCTGTGCAGTACAAGTCAG  497

seq1  GTTTCCTCTAAGCCAACAATGCAAATGAAAAGCTATGGACTCTGCCCTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTCTAAGCCAACAATGCAAATGAAAAGCTATGGACTCTGCCCTAA  547

seq1  AAGAGATGCCACTTCAAGAGGAGGGCTTAAGTGGAGTGGGGGCCATTGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATGCCACTTCAAGAGGAGGGCTTAAGTGGAGTGGGGGCCATTGGA  597

seq1  GCTACCCTGGATCTGTGTGAGAAGCATAAACATAAACAAAACATGTGTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCTGGATCTGTGTGAGAAGCATAAACATAAACAAAACATGTGTGG  647

seq1  AAAACAGTGACTTCAGCCTGACCTCTGAAGACTAGGGAGGAGGAAAAGAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTGACTTCAGCCTGACCTCTGAAGACTAGGGAGGAGGAAAAGAC  697

seq1  ACTTAAAGTAGGGGCAGTGGAGGCCCAGTTCTCTAGGGTGAGT-GGGGAG  746
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACTTAAAGTAGGGGCAGTGGAGGCCCAGTTCTCTAGGGTGAGTGGGGGAG  747

seq1  GGCAGTCTCCCTGGGAAAGCAGTCAATCACAGAACAGTGTAGCATCAACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCTCCCTGGGAAAGCAGTCAATCACAGAACAGTGTAGCATCAACA  797

seq1  GGAGAG-AAGTGAGATCTCAGAGAAGACCACATTGATGCCCCCACATGGA  845
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAAGTGAGATCTCAGAGAAGACCACATTGATGCCCCCACATGGA  847

seq1  GAATG-AAAGCAAATGGGCTGCATG-TTCAATAA-CAAATGTCACAGGAC  892
      ||||| ||||||||||||||||||| |||||||| |||||||||||||||
seq2  GAATGTAAAGCAAATGGGCTGCATGTTTCAATAACCAAATGTCACAGGAC  897

seq1  CATATCATCAGCCAGGGC-TAAGGAGAGACATAACCTGTAGGCCTGAGAG  941
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  CATATCATCAGCCAGGGCTTAAGGAGAGACATAACTTGTAGGCCTGAGAG  947

seq1  ATGAGAACAGAGAAGAGCC-CAGACA-TGAGGAAAGTCTGTGCAGAAGAG  989
      ||||||||||||||||||| |||||| |||||||||||||||||| ||||
seq2  ATGAGAACAGAGAAGAGCCTCAGACATTGAGGAAAGTCTGTGCAG-AGAG  996

seq1  ATTTTAATCTGAGGGCCAAGAAC-TTTCTAGATTTTTTTT-TAA-TTACT  1036
      |||||||||||| || | ||||| |||||||||||||||| ||| |||||
seq2  ATTTTAATCTGAAGGGCCAGAACTTTTCTAGATTTTTTTTCTAATTTACT  1046

seq1  GGGGAAGAAAT  1047
       ||| ||||||
seq2  -GGGCAGAAAT  1056